Wall clock time and date at job start Mon Mar 30 2020 01:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47378 * 2 1 4 4 C 1.53007 * 109.47307 * 239.99472 * 2 1 3 5 5 Cl 1.80302 * 109.46555 * 65.00122 * 4 2 1 6 6 C 1.53004 * 109.46966 * 120.00127 * 2 1 3 7 7 N 1.46499 * 109.46865 * 294.99707 * 6 2 1 8 8 C 1.38800 * 120.00310 * 180.02562 * 7 6 2 9 9 C 1.38636 * 120.21393 * 359.97438 * 8 7 6 10 10 C 1.38222 * 120.21633 * 179.97438 * 9 8 7 11 11 C 1.38792 * 120.66348 * 359.97438 * 10 9 8 12 12 C 1.37736 * 120.42933 * 0.04311 * 11 10 9 13 13 F 1.35102 * 120.11733 * 179.97438 * 12 11 10 14 14 C 1.40990 * 119.76260 * 359.70424 * 12 11 10 15 15 C 1.40999 * 120.31865 * 180.29924 * 14 12 11 16 16 H 1.08005 * 119.99942 * 216.77998 * 15 14 12 17 17 C 1.39907 * 120.00256 * 36.77781 * 15 14 12 18 18 N 1.30907 * 119.99932 * 19.59924 * 17 15 14 19 19 Si 1.86802 * 120.00258 * 199.59802 * 17 15 14 20 20 H 1.48501 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46935 * 120.00018 * 19 17 15 22 22 H 1.48498 * 109.47106 * 240.00145 * 19 17 15 23 23 H 1.08991 * 109.47252 * 300.00377 * 1 2 3 24 24 H 1.09007 * 109.47380 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46929 * 60.00349 * 1 2 3 26 26 H 1.09003 * 109.47026 * 184.99661 * 4 2 1 27 27 H 1.08995 * 109.46909 * 305.00623 * 4 2 1 28 28 H 1.09000 * 109.47086 * 54.99731 * 6 2 1 29 29 H 1.09000 * 109.47249 * 175.00361 * 6 2 1 30 30 H 0.97005 * 120.00178 * 0.02562 * 7 6 2 31 31 H 1.07992 * 119.88959 * 0.02562 * 9 8 7 32 32 H 1.08004 * 119.67247 * 180.02562 * 10 9 8 33 33 H 1.08005 * 119.78359 * 180.02562 * 11 10 9 34 34 H 0.97004 * 120.00270 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 17 1.5631 0.2098 -2.7176 6 6 2.0400 -0.7213 1.2493 7 7 1.6524 0.0354 2.4424 8 6 2.0066 -0.4264 3.7025 9 6 2.7267 -1.6034 3.8373 10 6 3.0799 -2.0629 5.0921 11 6 2.7213 -1.3563 6.2315 12 6 2.0056 -0.1839 6.1289 13 9 1.6594 0.4986 7.2423 14 6 1.6404 0.3042 4.8576 15 6 0.9132 1.5063 4.7387 16 1 0.1561 1.6061 3.9749 17 6 1.1723 2.5698 5.6100 18 7 2.3051 2.6189 6.2642 19 14 -0.0982 3.9198 5.8398 20 1 -1.2843 3.6325 4.9938 21 1 -0.5094 3.9750 7.2657 22 1 0.4890 5.2249 5.4432 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 3.1264 -0.7995 -1.2055 27 1 1.6054 -1.7199 -1.2951 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 1.1482 0.8591 2.3517 31 1 3.0133 -2.1625 2.9589 32 1 3.6412 -2.9807 5.1869 33 1 3.0051 -1.7282 7.2050 34 1 2.4850 3.3564 6.8681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162386695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:33 Heat of formation + Delta-G solvation = -47.375619 kcal Electronic energy + Delta-G solvation = -18514.105532 eV Core-core repulsion = 15386.307205 eV Total energy + Delta-G solvation = -3127.798327 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.83408 -38.22767 -36.78285 -35.51024 -33.50174 -32.80979 -29.68871 -27.90862 -27.12923 -25.43120 -24.59552 -21.27987 -20.34521 -19.89386 -17.33682 -16.51912 -15.88523 -15.29047 -15.00020 -14.41362 -14.20728 -14.10270 -13.73991 -13.50295 -13.36795 -13.03796 -12.65487 -12.59152 -11.71129 -11.65475 -11.45929 -11.31299 -11.17964 -11.08184 -10.82043 -10.70305 -10.54155 -10.48963 -10.37921 -10.06976 -9.49696 -8.99146 -8.88786 -7.13695 -6.71210 -6.37907 -4.21850 2.15250 2.76932 2.92202 3.14217 3.18470 3.18957 4.03690 4.22720 4.64790 4.69868 4.86972 4.91347 5.24988 5.34650 5.47043 5.52153 5.80555 5.90814 6.01756 6.09418 6.12081 6.21407 6.31744 6.43117 6.52022 6.99471 7.22897 7.35886 7.36791 7.63486 7.84466 8.09816 8.35142 8.54462 8.72585 8.92417 9.01261 10.34059 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.005385 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.209047 B = 5198.639492 C = 6450.321260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.021 4.021 5 Cl -0.190 7.190 6 C 0.142 3.858 7 N -0.741 5.741 8 C 0.149 3.851 9 C -0.193 4.193 10 C -0.162 4.162 11 C -0.181 4.181 12 C 0.061 3.939 13 F -0.143 7.143 14 C 0.041 3.959 15 C -0.477 4.477 16 H 0.076 0.924 17 C 0.081 3.919 18 N -0.787 5.787 19 Si 0.901 3.099 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.278 1.278 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.399 0.601 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 -4.483 -11.015 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 H 0.106 0.894 4 C -0.084 4.084 5 Cl -0.164 7.164 6 C 0.016 3.984 7 N -0.376 5.376 8 C 0.049 3.951 9 C -0.217 4.217 10 C -0.182 4.182 11 C -0.201 4.201 12 C 0.039 3.961 13 F -0.122 7.122 14 C 0.035 3.965 15 C -0.507 4.507 16 H 0.094 0.906 17 C -0.137 4.137 18 N -0.412 5.412 19 Si 0.726 3.274 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.203 1.203 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.235 0.765 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.743 -4.368 -11.046 11.902 hybrid contribution -0.585 1.115 0.345 1.305 sum -1.327 -3.254 -10.701 11.263 Atomic orbital electron populations 1.21875 0.93814 1.02338 1.02637 1.21632 0.97675 1.01085 0.92813 0.89385 1.24368 1.02517 0.96738 0.84824 1.98708 1.93900 1.78311 1.45454 1.20992 0.98439 0.94818 0.84149 1.43915 1.64080 1.28172 1.01447 1.17616 0.98257 0.94679 0.84584 1.20055 1.07267 0.97887 0.96472 1.19934 1.06118 1.00480 0.91699 1.20435 1.04771 0.97068 0.97859 1.17457 1.04994 0.91183 0.82439 1.91317 1.90434 1.79760 1.50653 1.17077 0.96787 0.94202 0.88398 1.18911 1.18801 0.96884 1.16112 0.90637 1.25654 0.94931 0.98945 0.94200 1.69801 1.20772 1.29903 1.20687 0.86374 0.81696 0.80165 0.79123 1.18673 1.19844 1.20341 0.91541 0.92526 0.92112 0.88722 0.88757 0.93160 0.93287 0.76490 0.88800 0.88599 0.88524 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.92 37.16 0.33 -1.40 16 2 C -0.11 -1.30 2.50 -90.61 -0.23 -1.52 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.02 -0.20 6.07 37.16 0.23 0.03 16 5 Cl -0.19 -2.04 28.12 -51.86 -1.46 -3.50 16 6 C 0.14 2.00 4.29 -4.04 -0.02 1.98 16 7 N -0.74 -13.86 5.36 -58.23 -0.31 -14.18 16 8 C 0.15 3.38 6.68 -83.32 -0.56 2.82 16 9 C -0.19 -4.08 9.29 -39.44 -0.37 -4.45 16 10 C -0.16 -3.48 10.03 -39.38 -0.40 -3.88 16 11 C -0.18 -4.27 9.99 -39.56 -0.40 -4.66 16 12 C 0.06 1.62 6.67 -38.72 -0.26 1.37 16 13 F -0.14 -3.97 14.27 2.25 0.03 -3.94 16 14 C 0.04 1.06 5.41 -106.57 -0.58 0.48 16 15 C -0.48 -12.37 8.13 -37.91 -0.31 -12.68 16 16 H 0.08 1.85 7.14 -52.48 -0.37 1.48 16 17 C 0.08 2.09 4.52 -17.32 -0.08 2.01 16 18 N -0.79 -21.34 11.11 55.55 0.62 -20.72 16 19 Si 0.90 19.41 29.60 -169.99 -5.03 14.38 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H 0.07 0.87 7.18 -51.93 -0.37 0.49 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.67 7.28 -51.93 -0.38 0.29 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.69 7.94 -51.93 -0.41 0.27 16 29 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 30 H 0.40 7.55 6.09 -40.82 -0.25 7.30 16 31 H 0.09 1.71 6.70 -52.49 -0.35 1.36 16 32 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 33 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 34 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -28.26 299.53 -8.48 -36.74 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.22 Total: 6.59 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.62 Total: -19.89 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.31 Total: -34.90 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.03 Total: -3.94 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -1.46 Total: -3.50 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.26 -8.48 -36.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162386695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.634 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds