Wall clock time and date at job start Mon Mar 30 2020 01:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 O 1.42903 * 109.46726 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 8 8 C 1.38533 * 120.00514 * 275.00167 * 7 2 1 9 9 C 1.40045 * 120.44572 * 359.72332 * 8 7 2 10 10 C 1.38810 * 118.59057 * 179.77844 * 9 8 7 11 11 Cl 1.73598 * 120.33430 * 180.24307 * 10 9 8 12 12 N 1.32198 * 119.32478 * 0.49618 * 10 9 8 13 13 C 1.33426 * 120.85926 * 359.74388 * 12 10 9 14 14 C 1.41579 * 119.23299 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99636 * 179.97438 * 14 13 12 16 16 C 1.40054 * 120.00364 * 359.97438 * 14 13 12 17 17 N 1.30692 * 119.99821 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00131 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47234 * 90.00054 * 18 16 14 20 20 H 1.48495 * 109.47111 * 209.99893 * 18 16 14 21 21 H 1.48502 * 109.47130 * 329.99794 * 18 16 14 22 22 N 1.32567 * 120.45461 * 179.97438 * 8 7 2 23 23 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 24 24 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 26 26 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 27 27 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 28 28 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 30 30 H 0.96700 * 113.99509 * 179.97438 * 6 5 4 31 31 H 0.97006 * 119.99491 * 95.00433 * 7 2 1 32 32 H 1.07997 * 120.70659 * 0.02562 * 9 8 7 33 33 H 0.97002 * 119.99930 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 8 4.0411 -1.2863 -2.4807 7 7 2.0183 -0.6905 1.1962 8 6 2.1506 0.0005 2.3896 9 6 1.8257 1.3609 2.4616 10 6 1.9684 2.0144 3.6779 11 17 1.5728 3.6987 3.8200 12 7 2.4134 1.3423 4.7257 13 6 2.7206 0.0475 4.6283 14 6 3.1938 -0.6389 5.7726 15 1 3.4456 -1.6871 5.7077 16 6 3.3353 0.0414 6.9886 17 7 3.0310 1.3100 7.0669 18 14 3.9589 -0.8645 8.4985 19 1 5.4397 -0.7679 8.5572 20 1 3.3743 -0.2533 9.7190 21 1 3.5587 -2.2924 8.4195 22 7 2.5911 -0.6156 3.4776 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6054 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2055 28 1 3.8532 0.4371 -1.3573 29 1 3.9994 -1.0726 -0.4259 30 1 5.0019 -1.2580 -2.5864 31 1 2.2490 -1.6317 1.1527 32 1 1.4679 1.8893 1.5904 33 1 3.1294 1.7812 7.9091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165866711.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:51 Heat of formation + Delta-G solvation = -40.368165 kcal Electronic energy + Delta-G solvation = -18343.715010 eV Core-core repulsion = 15236.140511 eV Total energy + Delta-G solvation = -3107.574500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97560 -38.86509 -37.43004 -37.22241 -35.53380 -33.92772 -32.55185 -30.47151 -29.79786 -28.28162 -24.51707 -24.02374 -23.45258 -21.65173 -19.84554 -18.52219 -18.11692 -17.72851 -16.85288 -16.27377 -15.93122 -15.58245 -15.51796 -15.18267 -15.06261 -14.58081 -14.01525 -13.81637 -13.22275 -13.08961 -12.84852 -12.81776 -12.74947 -12.63609 -12.07036 -12.04287 -11.98985 -11.88042 -11.55773 -10.95095 -10.89452 -10.84441 -10.11807 -9.40615 -8.79642 -8.42638 -6.78548 0.65353 1.14893 1.16307 1.42802 1.54081 1.59021 2.20611 2.40787 2.76059 3.20455 3.86684 4.00101 4.02700 4.22638 4.26023 4.43668 4.50399 4.54357 4.63657 4.64525 4.87830 4.93452 5.00064 5.03056 5.13128 5.17850 5.36945 5.40294 6.04341 6.19115 6.50582 6.70525 6.76683 6.83702 7.24975 8.21531 8.37816 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.005374 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.144071 B = 5208.939372 C = 6211.988567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.114 4.114 5 C 0.075 3.925 6 O -0.590 6.590 7 N -0.710 5.710 8 C 0.453 3.547 9 C -0.398 4.398 10 C 0.245 3.755 11 Cl -0.059 7.059 12 N -0.564 5.564 13 C 0.409 3.591 14 C -0.429 4.429 15 H 0.094 0.906 16 C 0.025 3.975 17 N -0.740 5.740 18 Si 1.000 3.000 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.255 1.255 22 N -0.666 5.666 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.396 0.604 31 H 0.401 0.599 32 H 0.139 0.861 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -1.061 -11.446 11.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.002 4.002 6 O -0.398 6.398 7 N -0.346 5.346 8 C 0.204 3.796 9 C -0.430 4.430 10 C 0.066 3.934 11 Cl -0.031 7.031 12 N -0.287 5.287 13 C 0.172 3.828 14 C -0.464 4.464 15 H 0.112 0.888 16 C -0.199 4.199 17 N -0.361 5.361 18 Si 0.819 3.181 19 H -0.185 1.185 20 H -0.189 1.189 21 H -0.179 1.179 22 N -0.398 5.398 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.246 0.754 31 H 0.236 0.764 32 H 0.157 0.843 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.105 -1.171 -10.665 10.785 hybrid contribution 0.526 0.346 0.147 0.647 sum -0.579 -0.824 -10.518 10.566 Atomic orbital electron populations 1.22217 0.94582 1.02639 1.02569 1.20969 0.94474 0.96778 0.82566 0.90239 1.21702 0.94133 1.02151 0.97217 1.22144 0.95216 0.95920 0.86965 1.86378 1.29065 1.78932 1.45435 1.44401 1.72215 1.12338 1.05617 1.18470 0.86425 0.87858 0.86825 1.21203 1.27564 0.95499 0.98742 1.21914 0.93282 0.87060 0.91113 1.98284 1.91831 1.14544 1.98472 1.68577 1.21556 1.09357 1.29199 1.19864 0.88459 0.84448 0.90066 1.19688 1.37074 0.97747 0.91934 0.88784 1.27063 0.93897 0.95633 1.03312 1.70230 1.28327 1.09984 1.27578 0.84951 0.79050 0.79073 0.75069 1.18453 1.18883 1.17879 1.68267 1.31315 1.40131 1.00070 0.89176 0.92129 0.93960 0.88026 0.90573 0.93186 0.94488 0.75445 0.76368 0.84299 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.46 71.98 0.68 -2.95 16 2 C 0.16 3.85 2.28 44.99 0.10 3.95 16 3 H 0.08 2.03 6.49 -2.38 -0.02 2.02 16 4 C -0.11 -2.27 5.12 30.59 0.16 -2.11 16 5 C 0.08 1.61 6.93 71.98 0.50 2.11 16 6 O -0.59 -11.95 13.66 -148.98 -2.04 -13.99 16 7 N -0.71 -23.34 4.68 -324.02 -1.52 -24.86 16 8 C 0.45 20.04 7.69 133.40 1.03 21.06 16 9 C -0.40 -17.45 8.77 22.85 0.20 -17.25 16 10 C 0.24 12.16 7.33 84.77 0.62 12.78 16 11 Cl -0.06 -2.48 29.15 -2.72 -0.08 -2.56 16 12 N -0.56 -32.05 7.86 -185.03 -1.45 -33.51 16 13 C 0.41 23.47 7.37 135.16 1.00 24.46 16 14 C -0.43 -23.73 9.37 23.53 0.22 -23.51 16 15 H 0.09 4.99 7.85 -2.91 -0.02 4.96 16 16 C 0.03 1.28 5.50 85.30 0.47 1.75 16 17 N -0.74 -39.54 11.42 21.84 0.25 -39.30 16 18 Si 1.00 37.57 29.56 68.60 2.03 39.60 16 19 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 22 N -0.67 -34.96 10.39 -191.54 -1.99 -36.95 16 23 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.04 1.16 7.80 -2.39 -0.02 1.14 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.04 0.90 7.75 -2.39 -0.02 0.88 16 30 H 0.40 4.74 9.12 -74.06 -0.68 4.06 16 31 H 0.40 12.63 8.73 -92.70 -0.81 11.83 16 32 H 0.14 5.18 6.32 -2.91 -0.02 5.16 16 33 H 0.28 13.63 8.29 -92.71 -0.77 12.86 16 Total: -1.00 -67.24 300.91 -0.15 -67.39 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.32 Total: 23.89 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 4.97 Total: 20.29 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -4.71 Total: -134.62 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -2.04 Total: -13.99 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -0.08 Total: -2.56 kcal Total: -67.24 -0.15 -67.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165866711.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.021 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds