Wall clock time and date at job start Mon Mar 30 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00415 * 2 1 4 4 H 1.48505 * 109.47146 * 270.00121 * 3 2 1 5 5 H 1.48501 * 109.46731 * 29.99633 * 3 2 1 6 6 H 1.48493 * 109.47548 * 149.99504 * 3 2 1 7 7 C 1.38814 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00103 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00249 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00316 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47369 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47131 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47289 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00072 * 180.02562 * 13 12 11 15 15 O 1.21712 * 119.99970 * 0.02562 * 14 13 12 16 16 C 1.46556 * 119.99709 * 179.97438 * 14 13 12 17 17 C 1.37932 * 126.22934 * 179.97438 * 16 14 13 18 18 C 1.39745 * 107.11713 * 179.97438 * 17 16 14 19 19 C 1.35657 * 107.89145 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 125.57763 * 180.02562 * 19 18 17 21 21 N 1.35573 * 108.84465 * 359.76395 * 19 18 17 22 22 H 0.97001 * 125.69798 * 180.23411 * 21 19 18 23 23 H 0.97001 * 119.99776 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99862 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.46813 * 59.99999 * 10 9 7 26 26 H 1.09004 * 109.47041 * 300.00126 * 10 9 7 27 27 H 1.09001 * 109.46997 * 60.00303 * 11 10 9 28 28 H 1.08996 * 109.47452 * 299.99877 * 11 10 9 29 29 H 1.09001 * 109.47289 * 60.00050 * 12 11 10 30 30 H 1.09004 * 109.47261 * 300.00306 * 12 11 10 31 31 H 0.97001 * 119.99251 * 0.02562 * 13 12 11 32 32 H 1.08005 * 126.43867 * 359.97438 * 17 16 14 33 33 H 1.08010 * 126.05308 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0011 12 6 6.3813 -3.5164 0.0017 13 7 7.8217 -3.2487 0.0023 14 6 8.6975 -4.2732 0.0024 15 8 8.2917 -5.4206 0.0016 16 6 10.1384 -4.0053 0.0025 17 6 11.1432 -4.9503 0.0031 18 6 12.3577 -4.2591 0.0023 19 6 12.0815 -2.9310 0.0018 20 17 13.2581 -1.6546 0.0002 21 7 10.7361 -2.7635 -0.0030 22 1 10.2717 -1.9119 -0.0076 23 1 -0.4850 0.8401 -0.0004 24 1 3.8646 -0.3622 0.0007 25 1 3.8491 -3.0422 -0.8892 26 1 3.8484 -3.0427 0.8908 27 1 5.8797 -1.6198 0.8911 28 1 5.8797 -1.6198 -0.8889 29 1 6.1181 -4.0884 -0.8880 30 1 6.1179 -4.0876 0.8919 31 1 8.1450 -2.3342 0.0027 32 1 11.0152 -6.0227 0.0040 33 1 13.3421 -4.7037 0.0021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166150966.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:29 Heat of formation + Delta-G solvation = -15.692625 kcal Electronic energy + Delta-G solvation = -17279.463097 eV Core-core repulsion = 14172.958610 eV Total energy + Delta-G solvation = -3106.504488 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44012 -40.30221 -37.77810 -37.64630 -36.07562 -33.96920 -32.48296 -31.83947 -30.11263 -27.14376 -24.55900 -23.28717 -22.76726 -21.73866 -21.33273 -20.26500 -19.49947 -17.35261 -17.14960 -16.98525 -16.45351 -16.11185 -15.69675 -15.21751 -15.09756 -15.00357 -14.81030 -14.06242 -13.94199 -13.80999 -13.75698 -12.90485 -12.76344 -12.58878 -12.56003 -12.31232 -12.12863 -12.03248 -11.82690 -11.35854 -10.99293 -10.32099 -10.22087 -9.33418 -9.27619 -8.04437 -5.39620 0.18193 0.52897 1.36797 1.42573 1.46033 1.49924 1.93447 2.17704 2.21849 2.47941 3.26818 3.51577 3.70677 4.04673 4.09276 4.15958 4.19992 4.28203 4.67407 4.68983 4.75984 4.85616 5.04881 5.16350 5.26016 5.26835 5.38099 5.63729 5.73704 6.05696 6.19127 6.38898 7.00339 7.06056 7.80422 8.01041 9.17134 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.002972 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.678220 B = 9418.344229 C =10445.272409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.245 1.245 7 C -0.242 4.242 8 H 0.053 0.947 9 N -0.758 5.758 10 C 0.153 3.847 11 C -0.123 4.123 12 C 0.131 3.869 13 N -0.714 5.714 14 C 0.588 3.412 15 O -0.566 6.566 16 C -0.048 4.048 17 C -0.106 4.106 18 C -0.180 4.180 19 C 0.089 3.911 20 Cl -0.001 7.001 21 N -0.522 5.522 22 H 0.432 0.568 23 H 0.259 0.741 24 H 0.369 0.631 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.410 0.590 32 H 0.159 0.841 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.710 -3.365 0.021 31.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.170 1.170 7 C -0.373 4.373 8 H 0.071 0.929 9 N -0.405 5.405 10 C 0.027 3.973 11 C -0.161 4.161 12 C 0.007 3.993 13 N -0.366 5.366 14 C 0.377 3.623 15 O -0.445 6.445 16 C -0.162 4.162 17 C -0.133 4.133 18 C -0.206 4.206 19 C -0.054 4.054 20 Cl 0.027 6.973 21 N -0.123 5.123 22 H 0.273 0.727 23 H 0.068 0.932 24 H 0.202 0.798 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.246 0.754 32 H 0.177 0.823 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 31.171 -4.032 0.022 31.431 hybrid contribution -0.335 1.856 -0.006 1.886 sum 30.836 -2.176 0.016 30.912 Atomic orbital electron populations 1.69904 1.07382 1.26898 1.59380 1.25639 0.96241 1.01762 1.02295 0.85294 0.78734 0.78803 0.78219 1.20206 1.22334 1.16961 1.19047 0.82858 0.93527 1.41893 0.92894 1.42648 1.02458 1.04232 1.91140 1.20660 0.90508 0.87554 0.98611 1.21773 0.93488 0.96881 1.03993 1.21180 0.78257 0.97265 1.02625 1.45760 1.06670 1.09362 1.74772 1.17147 0.84253 0.84883 0.76064 1.90862 1.79235 1.22267 1.52160 1.20226 0.92003 0.85006 1.18927 1.21535 0.90324 0.99755 1.01702 1.20969 1.00174 0.89528 1.09887 1.21210 0.81628 0.91356 1.11234 1.98429 1.52258 1.49397 1.97199 1.41936 1.04994 1.08537 1.56828 0.72735 0.93243 0.79772 0.95554 0.95638 0.89939 0.89808 0.91401 0.91447 0.75365 0.82318 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.28 13.97 21.65 0.30 -62.97 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 3 Si 0.96 44.13 27.74 68.60 1.90 46.03 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.25 -9.80 6.52 99.48 0.65 -9.15 16 7 C -0.24 -13.85 10.47 84.03 0.88 -12.97 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 9 N -0.76 -34.31 5.41 -343.45 -1.86 -36.17 16 10 C 0.15 5.45 6.26 86.38 0.54 5.99 16 11 C -0.12 -2.94 5.44 30.59 0.17 -2.77 16 12 C 0.13 2.93 5.67 86.38 0.49 3.42 16 13 N -0.71 -13.01 5.55 -467.18 -2.59 -15.60 16 14 C 0.59 13.37 7.78 86.41 0.67 14.04 16 15 O -0.57 -17.59 16.88 -4.39 -0.07 -17.67 16 16 C -0.05 -0.86 7.06 40.30 0.28 -0.58 16 17 C -0.11 -1.83 10.65 22.56 0.24 -1.59 16 18 C -0.18 -2.42 10.78 22.04 0.24 -2.18 16 19 C 0.09 1.15 7.74 83.52 0.65 1.79 16 20 Cl 0.00 -0.01 29.30 -2.72 -0.08 -0.09 16 21 N -0.52 -6.43 6.00 -174.62 -1.05 -7.47 16 22 H 0.43 2.98 8.19 -92.71 -0.76 2.22 16 23 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 24 H 0.37 15.34 5.53 -92.71 -0.51 14.83 16 25 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.41 4.73 7.60 -92.71 -0.70 4.02 16 32 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -74.29 305.60 0.31 -73.98 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.87 Total: 18.34 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 4.63 Total: 1.63 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -5.20 Total: -122.22 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.07 Total: -17.67 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.08 Total: -0.09 kcal Total: -74.29 0.31 -73.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166150966.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.288 kcal (2) G-P(sol) polarization free energy of solvation -74.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds