Wall clock time and date at job start Mon Mar 30 2020 01:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.38546 * 119.99862 * 269.99781 * 3 2 1 14 14 C 1.39577 * 120.49077 * 184.72265 * 13 3 2 15 15 C 1.38273 * 118.44369 * 179.77705 * 14 13 3 16 16 Cl 1.73598 * 120.38509 * 180.26314 * 15 14 13 17 17 N 1.32655 * 119.23770 * 0.49997 * 15 14 13 18 18 C 1.32288 * 120.92520 * 359.74171 * 17 15 14 19 19 O 1.35451 * 119.14899 * 180.02562 * 18 17 15 20 20 C 1.42902 * 116.99968 * 359.97438 * 19 18 17 21 21 N 1.32290 * 121.70775 * 0.02562 * 18 17 15 22 22 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 24 24 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 25 25 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 26 26 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 27 27 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 28 28 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 29 29 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.77419 * 0.02719 * 14 13 3 31 31 H 1.09000 * 109.46889 * 59.99854 * 20 19 18 32 32 H 1.08998 * 109.47310 * 180.02562 * 20 19 18 33 33 H 1.09004 * 109.47205 * 300.00267 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6347 4.1512 2.4173 11 1 -0.9944 3.8612 4.7379 12 1 -0.2949 5.8418 3.5259 13 6 2.2492 2.0344 -1.1999 14 6 2.8066 3.3139 -1.2139 15 6 3.0232 3.9246 -2.4354 16 17 3.7200 5.5127 -2.5119 17 7 2.6879 3.2848 -3.5481 18 6 2.1566 2.0742 -3.5025 19 8 1.8283 1.4537 -4.6609 20 6 2.0840 2.1657 -5.8733 21 7 1.9376 1.4538 -2.3548 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.0644 2.7986 1.1383 28 1 2.5506 1.3453 2.0283 29 1 2.0715 4.0835 4.4438 30 1 3.0663 3.8137 -0.2923 31 1 3.1494 2.3830 -5.9492 32 1 1.7753 1.5577 -6.7237 33 1 1.5218 3.0996 -5.8717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:00 Heat of formation + Delta-G solvation = 15.776660 kcal Electronic energy + Delta-G solvation = -18761.790289 eV Core-core repulsion = 15656.650411 eV Total energy + Delta-G solvation = -3105.139877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72662 -38.35867 -36.87675 -36.13833 -33.13808 -32.41428 -31.35276 -29.36260 -27.55211 -26.89722 -23.89451 -23.61392 -22.43340 -20.72026 -18.13090 -17.67494 -16.66719 -16.17488 -16.11420 -15.15683 -14.70275 -14.45115 -14.17040 -14.11822 -13.63363 -13.17038 -12.85003 -12.24431 -12.05573 -11.94268 -11.60098 -11.46903 -11.16699 -11.06887 -10.96097 -10.84369 -10.53392 -10.42257 -10.26934 -9.96521 -9.64336 -8.86127 -8.77421 -8.61600 -7.29090 -6.22710 -4.30887 1.42283 1.76073 1.92333 2.78824 3.19643 3.28583 3.32748 3.71255 4.21393 4.30875 4.74119 5.08834 5.15148 5.29056 5.35308 5.47220 5.62187 5.73551 5.76818 5.87753 6.00802 6.19484 6.32981 6.49592 6.78681 6.86794 6.93643 7.12388 7.40280 7.67177 7.85206 7.96119 8.00189 8.59033 8.78078 9.36579 10.82990 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.006568 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.462447 B = 4262.171455 C = 5261.805242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.125 3.875 3 N -0.559 5.559 4 C 0.244 3.756 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.488 3.512 14 C -0.287 4.287 15 C 0.271 3.729 16 Cl -0.030 7.030 17 N -0.624 5.624 18 C 0.548 3.452 19 O -0.293 6.293 20 C 0.048 3.952 21 N -0.587 5.587 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.266 0.734 30 H 0.163 0.837 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -2.218 -11.379 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.002 3.998 3 N -0.266 5.266 4 C 0.126 3.874 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.207 1.207 13 C 0.242 3.758 14 C -0.317 4.317 15 C 0.105 3.895 16 Cl -0.002 7.002 17 N -0.363 5.363 18 C 0.243 3.757 19 O -0.194 6.194 20 C -0.048 4.048 21 N -0.326 5.326 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.181 0.819 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.401 -2.807 -11.902 12.308 hybrid contribution -0.537 1.378 0.989 1.779 sum 0.865 -1.429 -10.913 11.040 Atomic orbital electron populations 1.22122 0.96133 1.00855 1.03078 1.21350 0.94758 0.81922 1.01811 1.47371 1.63034 1.13015 1.03148 1.19623 0.97547 0.92857 0.77414 1.21511 0.97634 1.31428 1.06868 0.91781 1.24923 0.96582 0.96079 0.96131 1.69921 1.27483 1.41165 1.14330 0.86449 0.83060 0.79492 0.78572 1.19673 1.20811 1.20720 1.18032 0.85257 0.87003 0.85531 1.21886 1.12764 0.97826 0.99215 1.21010 0.92108 0.87650 0.88696 1.98389 1.81686 1.21475 1.98611 1.67168 1.25629 1.11052 1.32450 1.19827 0.86668 0.83373 0.85862 1.86043 1.78629 1.42770 1.11965 1.22886 1.02124 0.97421 0.82330 1.66985 1.30986 1.38803 0.95834 0.92911 0.91199 0.92792 0.90785 0.90926 0.93993 0.93776 0.92461 0.81934 0.92105 0.88439 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 37.16 0.38 -2.41 16 2 C 0.12 2.19 6.17 -4.04 -0.02 2.16 16 3 N -0.56 -11.39 2.56 -175.05 -0.45 -11.84 16 4 C 0.24 5.62 5.07 -5.19 -0.03 5.59 16 5 C -0.54 -13.59 8.92 -34.44 -0.31 -13.89 16 6 H 0.06 1.68 7.42 -52.49 -0.39 1.29 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.49 9.98 7.38 -154.81 -1.14 8.84 16 14 C -0.29 -5.68 9.12 -39.07 -0.36 -6.04 16 15 C 0.27 4.97 7.32 -17.18 -0.13 4.85 16 16 Cl -0.03 -0.47 29.15 -51.86 -1.51 -1.99 16 17 N -0.62 -11.37 9.22 -11.91 -0.11 -11.48 16 18 C 0.55 10.24 8.49 -91.30 -0.77 9.47 16 19 O -0.29 -4.76 10.55 -18.05 -0.19 -4.95 16 20 C 0.05 0.56 10.36 101.05 1.05 1.60 16 21 N -0.59 -11.71 9.34 -13.97 -0.13 -11.84 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.07 1.32 7.26 -51.93 -0.38 0.95 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 1.25 7.48 -51.93 -0.39 0.86 16 26 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 27 H 0.04 1.00 6.05 -51.93 -0.31 0.69 16 28 H 0.04 1.05 7.89 -51.93 -0.41 0.64 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.16 3.33 6.15 -52.48 -0.32 3.00 16 31 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -27.56 302.55 -7.40 -34.96 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.85 Total: -1.31 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -1.43 Total: 11.79 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.05 Total: -58.48 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.19 Total: -4.95 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.56 -7.40 -34.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.737 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds