Wall clock time and date at job start Mon Mar 30 2020 01:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.38546 * 119.99862 * 269.99781 * 3 2 1 14 14 C 1.39577 * 120.49077 * 184.72265 * 13 3 2 15 15 C 1.38273 * 118.44369 * 179.77705 * 14 13 3 16 16 Cl 1.73598 * 120.38509 * 180.26314 * 15 14 13 17 17 N 1.32655 * 119.23770 * 0.49997 * 15 14 13 18 18 C 1.32288 * 120.92520 * 359.74171 * 17 15 14 19 19 O 1.35451 * 119.14899 * 180.02562 * 18 17 15 20 20 C 1.42902 * 116.99968 * 359.97438 * 19 18 17 21 21 N 1.32290 * 121.70775 * 0.02562 * 18 17 15 22 22 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 24 24 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 25 25 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 26 26 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 27 27 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 28 28 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 29 29 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.77419 * 0.02719 * 14 13 3 31 31 H 1.09000 * 109.46889 * 59.99854 * 20 19 18 32 32 H 1.08998 * 109.47310 * 180.02562 * 20 19 18 33 33 H 1.09004 * 109.47205 * 300.00267 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6347 4.1512 2.4173 11 1 -0.9944 3.8612 4.7379 12 1 -0.2949 5.8418 3.5259 13 6 2.2492 2.0344 -1.1999 14 6 2.8066 3.3139 -1.2139 15 6 3.0232 3.9246 -2.4354 16 17 3.7200 5.5127 -2.5119 17 7 2.6879 3.2848 -3.5481 18 6 2.1566 2.0742 -3.5025 19 8 1.8283 1.4537 -4.6609 20 6 2.0840 2.1657 -5.8733 21 7 1.9376 1.4538 -2.3548 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.0644 2.7986 1.1383 28 1 2.5506 1.3453 2.0283 29 1 2.0715 4.0835 4.4438 30 1 3.0663 3.8137 -0.2923 31 1 3.1494 2.3830 -5.9492 32 1 1.7753 1.5577 -6.7237 33 1 1.5218 3.0996 -5.8717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:00 Heat of formation + Delta-G solvation = -1.381972 kcal Electronic energy + Delta-G solvation = -18762.534343 eV Core-core repulsion = 15656.650411 eV Total energy + Delta-G solvation = -3105.883931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.18251 -39.70582 -38.33351 -37.56631 -34.98074 -33.99569 -32.82307 -30.94290 -29.03307 -28.25025 -25.36040 -25.32191 -23.97645 -22.21216 -19.56178 -19.13147 -18.58766 -17.67168 -17.43276 -16.82646 -16.23090 -16.05215 -15.53475 -15.36595 -15.16973 -14.73114 -14.38393 -13.94805 -13.45527 -13.31747 -13.01889 -12.88365 -12.82697 -12.70596 -12.39201 -12.30820 -12.18781 -11.97168 -11.72188 -11.56444 -11.45461 -10.61662 -10.34340 -10.23459 -8.90804 -8.18700 -6.34597 -0.06655 0.24437 0.50104 1.38779 1.42341 1.45709 1.53091 2.20391 2.41350 2.72478 3.09375 3.31601 3.71901 4.05711 4.21702 4.24743 4.44776 4.47211 4.49322 4.64228 4.67545 4.78482 4.95038 4.98695 5.08273 5.17472 5.44176 5.53015 5.70558 6.01262 6.02170 6.23210 6.42013 6.75569 7.12836 7.36343 8.84226 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.006568 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.462447 B = 4262.171455 C = 5261.805242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 N -0.566 5.566 4 C 0.260 3.740 5 C -0.538 4.538 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.479 3.521 14 C -0.304 4.304 15 C 0.274 3.726 16 Cl -0.005 7.005 17 N -0.617 5.617 18 C 0.544 3.456 19 O -0.299 6.299 20 C 0.041 3.959 21 N -0.597 5.597 22 H 0.085 0.915 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.268 0.732 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -2.327 -12.595 12.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.000 4.000 3 N -0.273 5.273 4 C 0.139 3.861 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.176 4.176 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.233 3.767 14 C -0.334 4.334 15 C 0.107 3.893 16 Cl 0.024 6.976 17 N -0.356 5.356 18 C 0.239 3.761 19 O -0.200 6.200 20 C -0.053 4.053 21 N -0.336 5.336 22 H 0.103 0.897 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.169 0.831 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.920 -2.930 -13.159 13.512 hybrid contribution -0.353 1.431 1.213 1.909 sum 0.567 -1.499 -11.945 12.052 Atomic orbital electron populations 1.22016 0.95735 1.02336 1.01033 1.21529 0.95014 0.80654 1.02832 1.47271 1.63778 1.13890 1.02406 1.19230 0.96212 0.92252 0.78371 1.21652 0.97935 1.31441 1.06681 0.92964 1.25571 0.98978 0.96782 0.96297 1.69997 1.28974 1.42039 1.14780 0.85588 0.79936 0.78476 0.78175 1.19883 1.20156 1.20455 1.18143 0.85493 0.87314 0.85777 1.21827 1.14116 0.98102 0.99392 1.21176 0.91273 0.88477 0.88343 1.98394 1.81118 1.19524 1.98558 1.67310 1.25426 1.10910 1.31976 1.20112 0.86129 0.83444 0.86454 1.86073 1.78217 1.43386 1.12325 1.23266 1.02558 0.98172 0.81341 1.66982 1.31406 1.39153 0.96077 0.89673 0.93454 0.94381 0.89852 0.89707 0.95242 0.94753 0.92275 0.83120 0.91778 0.84597 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 10.24 71.98 0.74 -4.37 16 2 C 0.12 4.19 6.17 86.38 0.53 4.73 16 3 N -0.57 -23.24 2.56 -707.74 -1.81 -25.05 16 4 C 0.26 12.16 5.07 85.63 0.43 12.59 16 5 C -0.54 -27.62 8.92 25.60 0.23 -27.39 16 6 H 0.05 2.77 7.42 -2.91 -0.02 2.75 16 7 C 0.02 1.26 5.46 84.66 0.46 1.72 16 8 N -0.92 -49.92 13.29 21.45 0.28 -49.63 16 9 Si 0.95 41.90 29.54 68.60 2.03 43.92 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.48 19.62 7.38 133.16 0.98 20.61 16 14 C -0.30 -12.14 9.12 22.60 0.21 -11.93 16 15 C 0.27 9.87 7.32 84.58 0.62 10.49 16 16 Cl 0.00 -0.14 29.15 -2.72 -0.08 -0.22 16 17 N -0.62 -21.74 9.22 -304.57 -2.81 -24.54 16 18 C 0.54 19.71 8.49 180.59 1.53 21.24 16 19 O -0.30 -9.17 10.55 -87.48 -0.92 -10.10 16 20 C 0.04 0.85 10.36 113.37 1.17 2.02 16 21 N -0.60 -23.48 9.34 -311.10 -2.90 -26.38 16 22 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.05 1.78 7.26 -2.39 -0.02 1.76 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 2.72 7.48 -2.39 -0.02 2.70 16 26 H 0.08 2.68 7.89 -2.39 -0.02 2.66 16 27 H 0.03 1.46 6.05 -2.39 -0.01 1.44 16 28 H 0.03 1.67 7.89 -2.39 -0.02 1.65 16 29 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.15 6.33 6.15 -2.91 -0.02 6.32 16 31 H 0.06 1.29 8.09 -2.39 -0.02 1.27 16 32 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 Total: -1.00 -57.81 302.55 1.82 -55.99 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.13 Total: 6.30 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: 6.91 Total: 29.71 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -7.24 Total: -125.61 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.92 Total: -10.10 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -57.81 1.82 -55.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.606 kcal (2) G-P(sol) polarization free energy of solvation -57.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds