Wall clock time and date at job start Mon Mar 30 2020 01:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46909 * 109.47221 * 2 1 4 4 C 1.46894 * 111.00143 * 199.69551 * 3 2 1 5 5 C 1.50706 * 109.47222 * 66.04721 * 4 3 2 6 6 H 1.07997 * 119.99769 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99944 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99953 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99753 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47200 * 90.00451 * 9 7 5 11 11 H 1.48500 * 109.46936 * 210.00296 * 9 7 5 12 12 H 1.48498 * 109.47332 * 330.00123 * 9 7 5 13 13 C 1.38766 * 110.99726 * 75.74032 * 3 2 1 14 14 N 1.32871 * 120.54546 * 68.30634 * 13 3 2 15 15 C 1.31935 * 120.72793 * 179.97438 * 14 13 3 16 16 Cl 1.73606 * 119.04820 * 180.02562 * 15 14 13 17 17 N 1.31841 * 121.90301 * 0.02562 * 15 14 13 18 18 C 1.32594 * 121.03711 * 359.72552 * 17 15 14 19 19 C 1.38488 * 119.14375 * 0.52337 * 18 17 15 20 20 O 1.36052 * 120.86168 * 179.76356 * 19 18 17 21 21 C 1.42901 * 116.99654 * 355.00138 * 20 19 18 22 22 H 1.08996 * 109.46895 * 174.86367 * 1 2 3 23 23 H 1.08998 * 109.46995 * 294.86938 * 1 2 3 24 24 H 1.09006 * 109.47207 * 54.86502 * 1 2 3 25 25 H 1.09004 * 109.47259 * 240.00065 * 2 1 3 26 26 H 1.08995 * 109.47198 * 119.99862 * 2 1 3 27 27 H 1.09001 * 109.47483 * 186.04774 * 4 3 2 28 28 H 1.08999 * 109.47507 * 306.04635 * 4 3 2 29 29 H 0.97003 * 119.99585 * 179.97438 * 8 7 5 30 30 H 1.07995 * 120.42903 * 180.28847 * 18 17 15 31 31 H 1.09003 * 109.47175 * 299.99562 * 21 20 19 32 32 H 1.09001 * 109.46627 * 180.02562 * 21 20 19 33 33 H 1.08994 * 109.47705 * 59.99601 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4125 1.4510 -0.4622 5 6 3.4802 1.0468 -1.9124 6 1 2.5788 0.7684 -2.4380 7 6 4.6930 1.0325 -2.5682 8 7 5.7907 1.3711 -1.9279 9 14 4.7769 0.5309 -4.3656 10 1 4.6089 1.7316 -5.2230 11 1 6.0944 -0.0955 -4.6436 12 1 3.6944 -0.4423 -4.6590 13 6 1.8846 1.9602 1.2556 14 7 2.6236 1.5367 2.2754 15 6 2.4984 2.0813 3.4706 16 17 3.4865 1.4946 4.7719 17 7 1.6447 3.0582 3.7052 18 6 0.8748 3.5401 2.7392 19 6 0.9669 2.9963 1.4688 20 8 0.1902 3.4607 0.4529 21 6 -0.7894 4.4470 0.7840 22 1 -0.3633 -1.0235 -0.0920 23 1 -0.3633 0.4322 0.9324 24 1 -0.3634 0.5915 -0.8405 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.7843 2.4696 -0.3511 28 1 4.0252 0.7737 0.1327 29 1 6.6439 1.3607 -2.3892 30 1 0.1822 4.3436 2.9412 31 1 -1.4826 4.0381 1.5192 32 1 -1.3383 4.7297 -0.1143 33 1 -0.2951 5.3249 1.1997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:56 Heat of formation + Delta-G solvation = -0.603467 kcal Electronic energy + Delta-G solvation = -18966.529757 eV Core-core repulsion = 15860.679584 eV Total energy + Delta-G solvation = -3105.850173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.55529 -39.55640 -38.88395 -37.79057 -35.00903 -34.23778 -32.09351 -31.42753 -28.66106 -28.47406 -25.34309 -24.71212 -24.39081 -22.35555 -19.54710 -19.10926 -18.67372 -18.23670 -17.43636 -16.70172 -16.36873 -15.92760 -15.57513 -15.50243 -15.24854 -14.59547 -14.32741 -14.12332 -13.35372 -13.08598 -12.94276 -12.83917 -12.75102 -12.55905 -12.49253 -12.36638 -12.20301 -12.14741 -11.91510 -11.71185 -11.43082 -10.66272 -10.54677 -9.64642 -9.51094 -8.22476 -6.34295 -0.37751 -0.27518 0.31903 1.42947 1.45050 1.56324 2.10833 2.34354 2.39642 2.64156 2.97848 3.10895 3.30896 3.72528 3.74484 4.20331 4.39942 4.41766 4.45714 4.63462 4.74587 4.82475 4.88095 4.97678 5.07970 5.16403 5.35138 5.54645 5.60403 5.91208 5.99178 6.12113 6.50526 6.65088 6.79674 7.35003 8.89359 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.006380 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.971378 B = 4387.907639 C = 5238.123884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.058 3.942 3 N -0.475 5.475 4 C 0.225 3.775 5 C -0.525 4.525 6 H 0.073 0.927 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.976 3.024 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.258 1.258 13 C 0.319 3.681 14 N -0.526 5.526 15 C 0.315 3.685 16 Cl 0.022 6.978 17 N -0.482 5.482 18 C 0.089 3.911 19 C 0.061 3.939 20 O -0.294 6.294 21 C 0.003 3.997 22 H 0.080 0.920 23 H 0.039 0.961 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.026 0.974 27 H -0.010 1.010 28 H -0.024 1.024 29 H 0.265 0.735 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.563 4.321 8.390 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.068 4.068 3 N -0.198 5.198 4 C 0.100 3.900 5 C -0.563 4.563 6 H 0.091 0.909 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.800 3.200 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.182 1.182 13 C 0.080 3.920 14 N -0.248 5.248 15 C 0.020 3.980 16 Cl 0.050 6.950 17 N -0.200 5.200 18 C -0.076 4.076 19 C 0.007 3.993 20 O -0.203 6.203 21 C -0.091 4.091 22 H 0.099 0.901 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.008 0.992 28 H -0.006 1.006 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.046 4.162 8.649 17.012 hybrid contribution 0.905 -0.269 -0.516 1.076 sum -13.142 3.892 8.133 15.937 Atomic orbital electron populations 1.21640 0.92660 1.02542 1.01529 1.22154 0.97148 0.86372 1.01160 1.60405 1.24065 1.20130 1.15209 1.19287 0.81330 0.94112 0.95272 1.21382 0.94040 1.45464 0.95415 0.90889 1.25980 0.94912 0.95083 1.03622 1.70127 0.99223 1.49206 1.38857 0.85281 0.77682 0.78727 0.78318 1.19756 1.20939 1.18240 1.20129 0.90342 0.92542 0.88992 1.68104 1.25664 1.30882 1.00114 1.22793 0.94350 0.92869 0.87967 1.98393 1.66379 1.86676 1.43544 1.67788 1.05653 1.10525 1.36018 1.23938 0.98195 0.99812 0.85700 1.20541 0.93899 0.94326 0.90489 1.86380 1.46642 1.56361 1.30943 1.23666 0.89981 0.90069 1.05398 0.90113 0.94136 0.91551 0.90035 0.95562 0.99209 1.00638 0.92609 0.75384 0.90090 0.85852 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.95 71.98 0.72 -3.16 16 2 C 0.06 2.35 5.50 86.30 0.48 2.82 16 3 N -0.47 -21.71 4.23 -705.07 -2.98 -24.69 16 4 C 0.22 12.61 4.42 85.56 0.38 12.99 16 5 C -0.52 -29.94 8.23 25.60 0.21 -29.73 16 6 H 0.07 3.99 7.31 -2.91 -0.02 3.97 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 9 Si 0.98 44.13 29.54 68.60 2.03 46.16 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 13 C 0.32 13.17 4.73 133.22 0.63 13.80 16 14 N -0.53 -22.32 9.66 -187.89 -1.81 -24.13 16 15 C 0.31 11.47 8.18 180.83 1.48 12.94 16 16 Cl 0.02 0.72 29.26 -2.72 -0.08 0.64 16 17 N -0.48 -15.00 10.40 -190.67 -1.98 -16.98 16 18 C 0.09 2.29 10.31 84.64 0.87 3.16 16 19 C 0.06 1.97 6.74 22.77 0.15 2.12 16 20 O -0.29 -8.37 10.32 -94.14 -0.97 -9.34 16 21 C 0.00 0.04 9.86 113.37 1.12 1.16 16 22 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.04 1.19 7.84 -2.39 -0.02 1.18 16 24 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 25 H 0.08 3.53 6.58 -2.38 -0.02 3.51 16 26 H 0.03 1.09 7.70 -2.39 -0.02 1.07 16 27 H -0.01 -0.64 8.06 -2.39 -0.02 -0.66 16 28 H -0.02 -1.51 8.06 -2.39 -0.02 -1.53 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.23 3.25 6.46 -2.91 -0.02 3.23 16 31 H 0.08 0.78 7.92 -2.39 -0.02 0.76 16 32 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 0.81 7.50 -2.39 -0.02 0.79 16 Total: -1.00 -72.04 301.55 2.10 -69.94 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: 1.12 Total: -1.20 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.50 Total: 16.71 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -6.50 Total: -122.90 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.97 Total: -9.34 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -72.04 2.10 -69.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.340 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds