Wall clock time and date at job start Mon Mar 30 2020 00:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65608 * 119.99733 * 2 1 4 4 O 1.42101 * 106.40026 * 304.50524 * 3 2 1 5 5 O 1.42095 * 106.39906 * 171.58626 * 3 2 1 6 6 C 1.76189 * 107.21962 * 58.04460 * 3 2 1 7 7 C 1.38363 * 120.45493 * 31.56574 * 6 3 2 8 8 C 1.38838 * 118.50840 * 180.02562 * 7 6 3 9 9 C 1.38168 * 119.33577 * 359.97438 * 8 7 6 10 10 N 1.31869 * 120.86689 * 0.02562 * 9 8 7 11 11 C 1.32523 * 121.61838 * 359.97438 * 10 9 8 12 12 N 1.38838 * 119.70853 * 179.97438 * 11 10 9 13 13 C 1.46496 * 120.00155 * 313.00670 * 12 11 10 14 14 C 1.36920 * 119.99746 * 133.00070 * 12 11 10 15 15 H 1.08001 * 119.99754 * 38.66147 * 14 12 11 16 16 C 1.38814 * 119.99966 * 218.65934 * 14 12 11 17 17 N 1.31569 * 120.00057 * 14.55270 * 16 14 12 18 18 Si 1.86801 * 119.99727 * 194.55514 * 16 14 12 19 19 H 1.48491 * 109.47300 * 94.95531 * 18 16 14 20 20 H 1.48500 * 109.46899 * 214.95613 * 18 16 14 21 21 H 1.48498 * 109.47060 * 334.95410 * 18 16 14 22 22 H 1.08998 * 109.47090 * 175.25579 * 1 2 3 23 23 H 1.09001 * 109.47088 * 295.25439 * 1 2 3 24 24 H 1.08999 * 109.47451 * 55.25838 * 1 2 3 25 25 H 0.96995 * 120.00316 * 180.02562 * 2 1 3 26 26 H 1.08002 * 120.74077 * 0.04524 * 7 6 3 27 27 H 1.07997 * 120.32919 * 179.97438 * 8 7 6 28 28 H 1.07997 * 119.56926 * 180.28337 * 9 8 7 29 29 H 1.09000 * 109.47373 * 355.68605 * 13 12 11 30 30 H 1.09004 * 109.47406 * 115.69161 * 13 12 11 31 31 H 1.08998 * 109.47042 * 235.68222 * 13 12 11 32 32 H 0.96996 * 119.99616 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.8248 2.1678 -1.1234 5 8 3.6614 1.1075 0.1995 6 6 1.7824 2.3313 1.4279 7 6 1.4147 1.6624 2.5820 8 6 1.0185 2.4094 3.6832 9 6 1.0035 3.7883 3.5959 10 7 1.3591 4.3996 2.4829 11 6 1.7433 3.7224 1.4105 12 7 2.1090 4.4067 0.2591 13 6 1.2645 5.4911 -0.2480 14 6 3.2590 4.0681 -0.4023 15 1 3.5455 3.0305 -0.4908 16 6 4.0566 5.0583 -0.9593 17 7 3.8776 6.3164 -0.6185 18 14 5.3840 4.6045 -2.1928 19 1 4.8508 4.7527 -3.5707 20 1 6.5529 5.5031 -2.0150 21 1 5.8036 3.1971 -1.9731 22 1 -0.3633 -1.0241 -0.0850 23 1 -0.3633 0.4384 0.9295 24 1 -0.3634 0.5856 -0.8444 25 1 1.9500 -0.8400 -0.0004 26 1 1.4357 0.5835 2.6252 27 1 0.7251 1.9176 4.5988 28 1 0.7004 4.3732 4.4516 29 1 0.3628 5.5640 0.3600 30 1 1.8128 6.4319 -0.1990 31 1 0.9897 5.2842 -1.2822 32 1 4.4347 7.0083 -1.0079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:47 Heat of formation + Delta-G solvation = 6.278101 kcal Electronic energy + Delta-G solvation = -19938.880118 eV Core-core repulsion = 16835.372059 eV Total energy + Delta-G solvation = -3103.508059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.32456 -36.39939 -36.05750 -34.90865 -34.59027 -32.09098 -31.70566 -29.27976 -26.55579 -25.69983 -24.24591 -23.12051 -21.16188 -19.11311 -17.94953 -17.44819 -16.61383 -16.12965 -15.65441 -15.21890 -14.80062 -14.27203 -13.89974 -13.79591 -13.58792 -12.91933 -12.68526 -12.59639 -12.41601 -12.15971 -11.45381 -11.22696 -11.17216 -11.13611 -11.09265 -10.87722 -10.32046 -10.20239 -10.03895 -9.44968 -9.42672 -9.28776 -8.62647 -8.52745 -7.07117 -6.24572 -3.97108 1.20048 1.58240 2.10282 3.24004 3.26966 3.36823 3.71091 4.09135 4.38248 4.53090 4.66167 4.95235 5.17297 5.27081 5.42534 5.47198 5.59827 5.66970 5.84091 5.99955 6.13963 6.25503 6.47611 6.53331 6.69688 6.85124 7.15805 7.23586 7.29070 7.43933 7.94576 8.50214 8.76083 9.16892 9.58869 10.63982 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.010558 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.412657 B = 2651.455583 C = 3537.522490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.138 6.138 3 S 2.708 3.292 4 O -0.935 6.935 5 O -0.971 6.971 6 C -0.783 4.783 7 C 0.042 3.958 8 C -0.283 4.283 9 C 0.178 3.822 10 N -0.532 5.532 11 C 0.450 3.550 12 N -0.437 5.437 13 C 0.107 3.893 14 C -0.303 4.303 15 H 0.073 0.927 16 C 0.046 3.954 17 N -0.856 5.856 18 Si 0.916 3.084 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.260 1.260 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.410 0.590 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.038 0.962 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -9.834 3.502 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.896 5.896 3 S 2.798 3.202 4 O -0.925 6.925 5 O -0.960 6.960 6 C -0.882 4.882 7 C 0.015 3.985 8 C -0.308 4.308 9 C 0.010 3.990 10 N -0.248 5.248 11 C 0.210 3.790 12 N -0.130 5.130 13 C -0.036 4.036 14 C -0.432 4.432 15 H 0.090 0.910 16 C -0.161 4.161 17 N -0.490 5.490 18 Si 0.740 3.260 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.183 1.183 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.243 0.757 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.162 0.838 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.765 -8.104 2.423 10.831 hybrid contribution 0.403 -1.309 0.342 1.411 sum -6.362 -9.412 2.766 11.693 Atomic orbital electron populations 1.21398 0.79279 1.03226 1.01989 1.55692 1.15867 1.25143 1.92861 1.01807 0.72814 0.71117 0.74475 1.93666 1.81529 1.69266 1.48010 1.93557 1.31601 1.83859 1.87033 1.30647 1.31104 1.06416 1.19998 1.20731 0.88392 0.98341 0.91041 1.21504 1.13710 0.95647 0.99951 1.22568 0.89470 0.92046 0.94897 1.67709 1.17661 1.40341 0.99103 1.17873 0.89179 0.86248 0.85708 1.42210 1.20570 1.32937 1.17234 1.21607 0.92189 0.93209 0.96605 1.19180 0.97110 0.93038 1.33858 0.91034 1.25334 0.97739 0.94840 0.98210 1.69923 1.39226 1.00145 1.39719 0.86054 0.79752 0.79654 0.80493 1.19666 1.20391 1.18349 0.90677 0.92542 0.91497 0.75745 0.85958 0.86003 0.83801 0.94311 0.89419 0.93448 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 11.05 59.85 0.66 1.69 16 2 N -1.14 -16.46 5.78 -16.63 -0.10 -16.55 16 3 S 2.71 57.67 3.80 -107.50 -0.41 57.26 16 4 O -0.94 -22.77 14.59 -57.17 -0.83 -23.60 16 5 O -0.97 -23.40 16.80 -57.17 -0.96 -24.36 16 6 C -0.78 -17.05 5.64 -39.19 -0.22 -17.27 16 7 C 0.04 0.73 8.84 -39.31 -0.35 0.39 16 8 C -0.28 -4.63 10.11 -39.39 -0.40 -5.03 16 9 C 0.18 3.25 11.18 -17.56 -0.20 3.06 16 10 N -0.53 -12.32 9.98 -12.43 -0.12 -12.45 16 11 C 0.45 11.23 6.46 -155.06 -1.00 10.23 16 12 N -0.44 -11.88 2.31 -122.43 -0.28 -12.16 16 13 C 0.11 2.67 9.85 59.84 0.59 3.26 16 14 C -0.30 -8.76 7.24 -15.07 -0.11 -8.87 16 15 H 0.07 2.09 3.34 -29.41 -0.10 1.99 16 16 C 0.05 1.29 5.20 -17.45 -0.09 1.20 16 17 N -0.86 -24.07 11.21 55.49 0.62 -23.44 16 18 Si 0.92 22.06 29.58 -169.99 -5.03 17.03 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.26 -6.34 7.11 56.52 0.40 -5.93 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.63 7.34 -51.93 -0.38 0.25 16 24 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 25 H 0.41 4.77 8.96 -34.48 -0.31 4.46 16 26 H 0.12 1.67 7.88 -52.49 -0.41 1.25 16 27 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.04 0.87 7.73 -51.93 -0.40 0.47 16 30 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 281.04 15.07 4.24 4.24 Total: -1.00 -34.86 281.04 -7.16 -42.01 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -3.16 Total: 3.38 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.11 Total: -11.35 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: 0.12 Total: -64.61 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -1.79 Total: -47.96 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 16 Polarization: 57.67 SS G_CDS: -0.41 Total: 57.26 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.86 -7.16 -42.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.292 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds