Wall clock time and date at job start Mon Mar 30 2020 00:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65608 * 119.99733 * 2 1 4 4 O 1.42101 * 106.40026 * 304.50524 * 3 2 1 5 5 O 1.42095 * 106.39906 * 171.58626 * 3 2 1 6 6 C 1.76189 * 107.21962 * 58.04460 * 3 2 1 7 7 C 1.38363 * 120.45493 * 31.56574 * 6 3 2 8 8 C 1.38838 * 118.50840 * 180.02562 * 7 6 3 9 9 C 1.38168 * 119.33577 * 359.97438 * 8 7 6 10 10 N 1.31869 * 120.86689 * 0.02562 * 9 8 7 11 11 C 1.32523 * 121.61838 * 359.97438 * 10 9 8 12 12 N 1.38838 * 119.70853 * 179.97438 * 11 10 9 13 13 C 1.46496 * 120.00155 * 313.00670 * 12 11 10 14 14 C 1.36920 * 119.99746 * 133.00070 * 12 11 10 15 15 H 1.08001 * 119.99754 * 38.66147 * 14 12 11 16 16 C 1.38814 * 119.99966 * 218.65934 * 14 12 11 17 17 N 1.31569 * 120.00057 * 14.55270 * 16 14 12 18 18 Si 1.86801 * 119.99727 * 194.55514 * 16 14 12 19 19 H 1.48491 * 109.47300 * 94.95531 * 18 16 14 20 20 H 1.48500 * 109.46899 * 214.95613 * 18 16 14 21 21 H 1.48498 * 109.47060 * 334.95410 * 18 16 14 22 22 H 1.08998 * 109.47090 * 175.25579 * 1 2 3 23 23 H 1.09001 * 109.47088 * 295.25439 * 1 2 3 24 24 H 1.08999 * 109.47451 * 55.25838 * 1 2 3 25 25 H 0.96995 * 120.00316 * 180.02562 * 2 1 3 26 26 H 1.08002 * 120.74077 * 0.04524 * 7 6 3 27 27 H 1.07997 * 120.32919 * 179.97438 * 8 7 6 28 28 H 1.07997 * 119.56926 * 180.28337 * 9 8 7 29 29 H 1.09000 * 109.47373 * 355.68605 * 13 12 11 30 30 H 1.09004 * 109.47406 * 115.69161 * 13 12 11 31 31 H 1.08998 * 109.47042 * 235.68222 * 13 12 11 32 32 H 0.96996 * 119.99616 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.8248 2.1678 -1.1234 5 8 3.6614 1.1075 0.1995 6 6 1.7824 2.3313 1.4279 7 6 1.4147 1.6624 2.5820 8 6 1.0185 2.4094 3.6832 9 6 1.0035 3.7883 3.5959 10 7 1.3591 4.3996 2.4829 11 6 1.7433 3.7224 1.4105 12 7 2.1090 4.4067 0.2591 13 6 1.2645 5.4911 -0.2480 14 6 3.2590 4.0681 -0.4023 15 1 3.5455 3.0305 -0.4908 16 6 4.0566 5.0583 -0.9593 17 7 3.8776 6.3164 -0.6185 18 14 5.3840 4.6045 -2.1928 19 1 4.8508 4.7527 -3.5707 20 1 6.5529 5.5031 -2.0150 21 1 5.8036 3.1971 -1.9731 22 1 -0.3633 -1.0241 -0.0850 23 1 -0.3633 0.4384 0.9295 24 1 -0.3634 0.5856 -0.8444 25 1 1.9500 -0.8400 -0.0004 26 1 1.4357 0.5835 2.6252 27 1 0.7251 1.9176 4.5988 28 1 0.7004 4.3732 4.4516 29 1 0.3628 5.5640 0.3600 30 1 1.8128 6.4319 -0.1990 31 1 0.9897 5.2842 -1.2822 32 1 4.4347 7.0083 -1.0079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:47 Heat of formation + Delta-G solvation = -21.807222 kcal Electronic energy + Delta-G solvation = -19940.097989 eV Core-core repulsion = 16835.372059 eV Total energy + Delta-G solvation = -3104.725930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98057 -38.15418 -37.81120 -36.59525 -35.87620 -33.96026 -33.32736 -30.95759 -28.45814 -26.78535 -26.05729 -24.69042 -22.88974 -20.66447 -19.76799 -19.06133 -18.14855 -17.73355 -17.31669 -16.79531 -16.54443 -15.83514 -15.64721 -15.37220 -14.89480 -14.57144 -14.30459 -14.19003 -13.87946 -13.60759 -13.22853 -13.04428 -12.97846 -12.91081 -12.74861 -12.59609 -12.15607 -11.93080 -11.82771 -11.23758 -11.00298 -10.59921 -10.36892 -10.13727 -8.94507 -8.19125 -6.03044 -0.39991 0.01931 0.55793 1.31439 1.34712 1.46142 2.21264 2.29167 2.77238 2.86821 2.90123 3.02546 3.80017 3.96264 4.00928 4.24119 4.37705 4.42038 4.65095 4.65401 4.75954 4.86487 4.93762 4.97427 5.05980 5.20115 5.21944 5.40844 5.81571 6.01993 6.18893 6.61694 7.07776 7.25529 7.72474 8.67708 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.010558 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.412657 B = 2651.455583 C = 3537.522490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.115 6.115 3 S 2.715 3.285 4 O -0.975 6.975 5 O -1.009 7.009 6 C -0.794 4.794 7 C 0.037 3.963 8 C -0.250 4.250 9 C 0.169 3.831 10 N -0.571 5.571 11 C 0.434 3.566 12 N -0.475 5.475 13 C 0.122 3.878 14 C -0.325 4.325 15 H 0.062 0.938 16 C -0.004 4.004 17 N -0.888 5.888 18 Si 0.958 3.042 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.270 1.270 22 H 0.122 0.878 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.427 0.573 26 H 0.170 0.830 27 H 0.179 0.821 28 H 0.188 0.812 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 -12.616 6.026 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.879 5.879 3 S 2.805 3.195 4 O -0.964 6.964 5 O -0.999 6.999 6 C -0.892 4.892 7 C 0.010 3.990 8 C -0.273 4.273 9 C 0.005 3.995 10 N -0.289 5.289 11 C 0.197 3.803 12 N -0.174 5.174 13 C -0.022 4.022 14 C -0.454 4.454 15 H 0.079 0.921 16 C -0.206 4.206 17 N -0.525 5.525 18 Si 0.781 3.219 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.195 1.195 22 H 0.140 0.860 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.263 0.737 26 H 0.187 0.813 27 H 0.197 0.803 28 H 0.205 0.795 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.286 -10.933 5.025 14.610 hybrid contribution 0.612 -0.731 -0.077 0.956 sum -7.674 -11.664 4.949 14.813 Atomic orbital electron populations 1.21752 0.76937 1.06160 1.02071 1.55078 1.17085 1.23447 1.92305 1.01160 0.72200 0.72008 0.74088 1.93610 1.81888 1.71206 1.49723 1.93488 1.34470 1.84584 1.87349 1.30882 1.30687 1.05617 1.21994 1.21401 0.86984 1.00864 0.89709 1.22201 1.09159 0.94794 1.01191 1.23471 0.87856 0.93928 0.94256 1.67699 1.19304 1.41770 1.00117 1.18257 0.88641 0.87410 0.85988 1.42084 1.21290 1.34771 1.19243 1.21344 0.92228 0.92327 0.96273 1.19303 0.98514 0.92750 1.34820 0.92125 1.26065 0.99520 0.95056 0.99991 1.70012 1.40488 1.00558 1.41467 0.85441 0.78370 0.78863 0.79233 1.18618 1.18660 1.19469 0.85974 0.91439 0.92909 0.73653 0.81293 0.80317 0.79546 0.92988 0.91672 0.94694 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 11.05 127.77 1.41 2.92 16 2 N -1.12 -29.26 5.78 -206.54 -1.19 -30.45 16 3 S 2.71 114.91 3.80 -56.49 -0.21 114.69 16 4 O -0.98 -48.98 14.59 -128.00 -1.87 -50.85 16 5 O -1.01 -49.11 16.80 -128.00 -2.15 -51.26 16 6 C -0.79 -33.41 5.64 22.53 0.13 -33.28 16 7 C 0.04 1.13 8.84 22.44 0.20 1.32 16 8 C -0.25 -6.64 10.11 22.40 0.23 -6.42 16 9 C 0.17 5.47 11.18 84.67 0.95 6.41 16 10 N -0.57 -25.86 9.98 -193.23 -1.93 -27.79 16 11 C 0.43 21.71 6.46 133.09 0.86 22.57 16 12 N -0.48 -26.86 2.31 -541.27 -1.25 -28.11 16 13 C 0.12 6.44 9.85 127.77 1.26 7.70 16 14 C -0.32 -19.67 7.24 84.04 0.61 -19.06 16 15 H 0.06 3.71 3.34 -17.58 -0.06 3.65 16 16 C 0.00 -0.22 5.20 84.87 0.44 0.23 16 17 N -0.89 -52.62 11.21 21.65 0.24 -52.38 16 18 Si 0.96 46.93 29.58 68.60 2.03 48.96 16 19 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 22 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.07 1.20 7.34 -2.39 -0.02 1.19 16 24 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 25 H 0.43 8.54 8.96 -96.75 -0.87 7.67 16 26 H 0.17 3.52 7.88 -2.91 -0.02 3.50 16 27 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.05 2.46 7.73 -2.39 -0.02 2.44 16 30 H 0.07 3.68 6.04 -2.39 -0.01 3.66 16 31 H 0.03 1.82 8.14 -2.39 -0.02 1.81 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -82.44 281.04 -0.01 -82.44 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.25 Total: 12.34 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 6.08 Total: -17.60 kcal Atomic # 7 Polarization: -134.60 SS G_CDS: -4.13 Total: -138.72 kcal Atomic # 8 Polarization: -98.09 SS G_CDS: -4.02 Total: -102.11 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: 114.91 SS G_CDS: -0.21 Total: 114.69 kcal Total: -82.44 -0.01 -82.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.636 kcal (2) G-P(sol) polarization free energy of solvation -82.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds