Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46844 * 2 1 4 4 C 1.42901 * 113.99499 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.46665 * 180.02562 * 4 3 2 6 6 C 1.38173 * 120.82468 * 355.06779 * 5 4 3 7 7 N 1.32528 * 119.21491 * 179.70161 * 6 5 4 8 8 C 1.31955 * 121.00519 * 0.61368 * 7 6 5 9 9 Cl 1.73597 * 119.09650 * 179.68485 * 8 7 6 10 10 N 1.31837 * 121.80891 * 359.66027 * 8 7 6 11 11 C 1.33051 * 120.67468 * 0.02562 * 10 8 7 12 12 N 1.38528 * 120.52825 * 179.97438 * 11 10 8 13 13 C 1.46503 * 119.99611 * 274.68772 * 12 11 10 14 14 C 1.36930 * 120.00331 * 94.69085 * 12 11 10 15 15 H 1.08004 * 119.99822 * 6.73426 * 14 12 11 16 16 C 1.38850 * 120.00376 * 186.73970 * 14 12 11 17 17 N 1.31536 * 119.99663 * 6.86257 * 16 14 12 18 18 Si 1.86796 * 120.00251 * 186.85901 * 16 14 12 19 19 H 1.48504 * 109.46917 * 89.99897 * 18 16 14 20 20 H 1.48497 * 109.47203 * 210.00006 * 18 16 14 21 21 H 1.48501 * 109.47312 * 330.00364 * 18 16 14 22 22 H 1.09004 * 109.46785 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47375 * 299.99929 * 1 2 3 24 24 H 1.09001 * 109.47289 * 60.00457 * 1 2 3 25 25 H 1.09001 * 109.47233 * 240.00365 * 2 1 3 26 26 H 1.08996 * 109.47219 * 120.00274 * 2 1 3 27 27 H 1.08999 * 109.46976 * 299.99371 * 4 3 2 28 28 H 1.08990 * 109.47222 * 60.00112 * 4 3 2 29 29 H 1.08003 * 120.39529 * 359.97438 * 6 5 4 30 30 H 1.08998 * 109.47609 * 354.22395 * 13 12 11 31 31 H 1.08998 * 109.47132 * 114.22518 * 13 12 11 32 32 H 1.09002 * 109.47248 * 234.22247 * 13 12 11 33 33 H 0.96999 * 119.99769 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 6 2.8597 3.9051 -0.1009 7 7 3.2366 5.1756 -0.0911 8 6 4.5107 5.5060 0.0012 9 17 4.9495 7.1856 0.0013 10 7 5.4597 4.5955 0.0939 11 6 5.1589 3.2995 0.0968 12 7 6.1585 2.3453 0.1939 13 6 6.8563 1.8905 -1.0113 14 6 6.4944 1.8273 1.4161 15 1 5.9099 2.0795 2.2886 16 6 7.5864 0.9779 1.5339 17 7 8.3778 0.7773 0.5026 18 14 7.9319 0.1203 3.1570 19 1 7.2270 -1.1864 3.1862 20 1 9.3933 -0.1023 3.2981 21 1 7.4498 0.9678 4.2771 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8340 0.9765 0.8892 28 1 3.8332 0.9768 -0.8907 29 1 1.8144 3.6459 -0.1824 30 1 6.3884 2.3326 -1.8909 31 1 7.9014 2.1963 -0.9633 32 1 6.7984 0.8039 -1.0765 33 1 9.1409 0.1842 0.5850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = 28.020455 kcal Electronic energy + Delta-G solvation = -18751.387044 eV Core-core repulsion = 15646.778098 eV Total energy + Delta-G solvation = -3104.608946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52304 -37.82396 -36.58439 -36.00513 -33.01882 -32.65114 -31.06104 -30.06107 -26.33206 -26.18834 -24.64362 -22.75355 -22.17694 -21.52197 -17.82114 -17.61199 -16.58139 -16.00945 -15.83747 -15.19528 -15.00935 -14.67944 -13.87408 -13.52230 -13.42756 -13.21201 -12.69398 -12.43509 -12.27222 -11.66386 -11.43666 -11.19191 -11.16516 -11.08076 -10.97341 -10.82342 -10.44990 -10.40048 -10.18203 -9.93316 -9.61745 -9.01498 -8.75017 -8.48843 -7.50645 -5.98940 -3.52833 1.26075 1.59379 1.87622 3.22326 3.29287 3.31353 3.69454 4.08998 4.16176 4.55517 4.91248 5.07188 5.10067 5.15295 5.28412 5.35934 5.47399 5.54993 5.70878 5.79905 5.88766 5.96857 6.07427 6.23346 6.42198 6.65785 7.19660 7.31725 7.43314 7.51689 7.63635 8.03557 8.47930 8.85746 9.49817 9.82239 10.98519 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.008526 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.288662 B = 3283.386610 C = 5334.475262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.397 6.397 4 C 0.130 3.870 5 C -0.198 4.198 6 C 0.172 3.828 7 N -0.532 5.532 8 C 0.363 3.637 9 Cl -0.008 7.008 10 N -0.522 5.522 11 C 0.471 3.529 12 N -0.544 5.544 13 C 0.167 3.833 14 C -0.268 4.268 15 H 0.080 0.920 16 C 0.016 3.984 17 N -0.901 5.901 18 Si 0.920 3.080 19 H -0.283 1.283 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.177 0.823 30 H -0.002 1.002 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 -0.088 -2.355 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.317 6.317 4 C 0.053 3.947 5 C -0.207 4.207 6 C 0.008 3.992 7 N -0.250 5.250 8 C 0.067 3.933 9 Cl 0.020 6.980 10 N -0.243 5.243 11 C 0.234 3.766 12 N -0.264 5.264 13 C 0.025 3.975 14 C -0.395 4.395 15 H 0.098 0.902 16 C -0.183 4.183 17 N -0.545 5.545 18 Si 0.749 3.251 19 H -0.209 1.209 20 H -0.211 1.211 21 H -0.202 1.202 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.193 0.807 30 H 0.016 0.984 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.752 1.003 -2.373 11.056 hybrid contribution 0.449 -1.195 0.857 1.538 sum -10.303 -0.192 -1.516 10.415 Atomic orbital electron populations 1.21740 0.94018 1.01994 1.02968 1.22402 0.95108 0.83748 1.00420 1.87717 1.21661 1.26599 1.95694 1.20845 0.79701 0.91757 1.02404 1.21999 0.95579 0.97430 1.05717 1.22812 1.00480 0.85425 0.90448 1.67831 1.18042 1.21344 1.17763 1.23003 0.85944 0.88498 0.95838 1.98381 1.92479 1.10802 1.96376 1.68487 1.38378 1.02601 1.14877 1.18411 0.88324 0.85330 0.84562 1.41791 1.39666 1.38163 1.06811 1.21241 0.96434 0.98061 0.81791 1.19175 1.10893 1.24317 0.85119 0.90241 1.24959 0.95778 0.99367 0.98243 1.70154 1.16389 1.38942 1.29020 0.86016 0.77616 0.79435 0.82077 1.20918 1.21146 1.20175 0.91334 0.91919 0.91978 0.93356 0.93168 0.90150 0.91541 0.80656 0.98351 0.91839 0.92782 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16 2 C 0.06 0.70 6.66 37.16 0.25 0.95 16 3 O -0.40 -5.85 8.94 -35.23 -0.31 -6.16 16 4 C 0.13 2.20 5.85 36.01 0.21 2.41 16 5 C -0.20 -3.80 5.93 -104.11 -0.62 -4.42 16 6 C 0.17 3.02 10.63 -17.28 -0.18 2.84 16 7 N -0.53 -10.09 10.40 -11.71 -0.12 -10.21 16 8 C 0.36 7.35 8.18 -91.98 -0.75 6.60 16 9 Cl -0.01 -0.13 29.27 -51.86 -1.52 -1.65 16 10 N -0.52 -11.90 10.44 -10.85 -0.11 -12.01 16 11 C 0.47 10.60 5.99 -154.72 -0.93 9.67 16 12 N -0.54 -13.32 2.49 -122.22 -0.30 -13.63 16 13 C 0.17 3.97 8.95 59.85 0.54 4.51 16 14 C -0.27 -6.96 9.53 -15.05 -0.14 -7.10 16 15 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 16 C 0.02 0.41 5.40 -17.45 -0.09 0.32 16 17 N -0.90 -24.13 9.60 55.49 0.53 -23.60 16 18 Si 0.92 20.54 29.56 -169.99 -5.02 15.52 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.47 7.89 -51.93 -0.41 1.06 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.18 2.60 7.13 -52.48 -0.37 2.22 16 30 H 0.00 -0.05 7.90 -51.93 -0.41 -0.46 16 31 H 0.06 1.66 6.81 -51.93 -0.35 1.31 16 32 H 0.05 1.30 7.33 -51.93 -0.38 0.92 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -27.94 301.48 -7.67 -35.61 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -4.01 Total: -3.17 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: -1.34 Total: 14.76 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.01 Total: -59.45 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.31 Total: -6.16 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.65 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.94 -7.67 -35.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.633 kcal (2) G-P(sol) polarization free energy of solvation -27.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds