Wall clock time and date at job start Mon Mar 30 2020 01:27:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 O 1.42903 * 109.46844 * 2 1
4 4 C 1.42901 * 113.99499 * 180.02562 * 3 2 1
5 5 C 1.50704 * 109.46665 * 180.02562 * 4 3 2
6 6 C 1.38173 * 120.82468 * 355.06779 * 5 4 3
7 7 N 1.32528 * 119.21491 * 179.70161 * 6 5 4
8 8 C 1.31955 * 121.00519 * 0.61368 * 7 6 5
9 9 Cl 1.73597 * 119.09650 * 179.68485 * 8 7 6
10 10 N 1.31837 * 121.80891 * 359.66027 * 8 7 6
11 11 C 1.33051 * 120.67468 * 0.02562 * 10 8 7
12 12 N 1.38528 * 120.52825 * 179.97438 * 11 10 8
13 13 C 1.46503 * 119.99611 * 274.68772 * 12 11 10
14 14 C 1.36930 * 120.00331 * 94.69085 * 12 11 10
15 15 H 1.08004 * 119.99822 * 6.73426 * 14 12 11
16 16 C 1.38850 * 120.00376 * 186.73970 * 14 12 11
17 17 N 1.31536 * 119.99663 * 6.86257 * 16 14 12
18 18 Si 1.86796 * 120.00251 * 186.85901 * 16 14 12
19 19 H 1.48504 * 109.46917 * 89.99897 * 18 16 14
20 20 H 1.48497 * 109.47203 * 210.00006 * 18 16 14
21 21 H 1.48501 * 109.47312 * 330.00364 * 18 16 14
22 22 H 1.09004 * 109.46785 * 179.97438 * 1 2 3
23 23 H 1.08993 * 109.47375 * 299.99929 * 1 2 3
24 24 H 1.09001 * 109.47289 * 60.00457 * 1 2 3
25 25 H 1.09001 * 109.47233 * 240.00365 * 2 1 3
26 26 H 1.08996 * 109.47219 * 120.00274 * 2 1 3
27 27 H 1.08999 * 109.46976 * 299.99371 * 4 3 2
28 28 H 1.08990 * 109.47222 * 60.00112 * 4 3 2
29 29 H 1.08003 * 120.39529 * 359.97438 * 6 5 4
30 30 H 1.08998 * 109.47609 * 354.22395 * 13 12 11
31 31 H 1.08998 * 109.47132 * 114.22518 * 13 12 11
32 32 H 1.09002 * 109.47248 * 234.22247 * 13 12 11
33 33 H 0.96999 * 119.99769 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8194 2.9162 0.0001
6 6 2.8597 3.9051 -0.1009
7 7 3.2366 5.1756 -0.0911
8 6 4.5107 5.5060 0.0012
9 17 4.9495 7.1856 0.0013
10 7 5.4597 4.5955 0.0939
11 6 5.1589 3.2995 0.0968
12 7 6.1585 2.3453 0.1939
13 6 6.8563 1.8905 -1.0113
14 6 6.4944 1.8273 1.4161
15 1 5.9099 2.0795 2.2886
16 6 7.5864 0.9779 1.5339
17 7 8.3778 0.7773 0.5026
18 14 7.9319 0.1203 3.1570
19 1 7.2270 -1.1864 3.1862
20 1 9.3933 -0.1023 3.2981
21 1 7.4498 0.9678 4.2771
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 -0.3634 0.5138 -0.8900
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5139 0.8899
27 1 3.8340 0.9765 0.8892
28 1 3.8332 0.9768 -0.8907
29 1 1.8144 3.6459 -0.1824
30 1 6.3884 2.3326 -1.8909
31 1 7.9014 2.1963 -0.9633
32 1 6.7984 0.8039 -1.0765
33 1 9.1409 0.1842 0.5850
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166799287.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:27:40
Heat of formation + Delta-G solvation = 28.020455 kcal
Electronic energy + Delta-G solvation = -18751.387044 eV
Core-core repulsion = 15646.778098 eV
Total energy + Delta-G solvation = -3104.608946 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.083 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.52304 -37.82396 -36.58439 -36.00513 -33.01882 -32.65114 -31.06104 -30.06107
-26.33206 -26.18834 -24.64362 -22.75355 -22.17694 -21.52197 -17.82114 -17.61199
-16.58139 -16.00945 -15.83747 -15.19528 -15.00935 -14.67944 -13.87408 -13.52230
-13.42756 -13.21201 -12.69398 -12.43509 -12.27222 -11.66386 -11.43666 -11.19191
-11.16516 -11.08076 -10.97341 -10.82342 -10.44990 -10.40048 -10.18203 -9.93316
-9.61745 -9.01498 -8.75017 -8.48843 -7.50645 -5.98940 -3.52833 1.26075
1.59379 1.87622 3.22326 3.29287 3.31353 3.69454 4.08998 4.16176
4.55517 4.91248 5.07188 5.10067 5.15295 5.28412 5.35934 5.47399
5.54993 5.70878 5.79905 5.88766 5.96857 6.07427 6.23346 6.42198
6.65785 7.19660 7.31725 7.43314 7.51689 7.63635 8.03557 8.47930
8.85746 9.49817 9.82239 10.98519
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.010651 B = 0.008526 C = 0.005248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2628.288662 B = 3283.386610 C = 5334.475262
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.060 3.940
3 O -0.397 6.397
4 C 0.130 3.870
5 C -0.198 4.198
6 C 0.172 3.828
7 N -0.532 5.532
8 C 0.363 3.637
9 Cl -0.008 7.008
10 N -0.522 5.522
11 C 0.471 3.529
12 N -0.544 5.544
13 C 0.167 3.833
14 C -0.268 4.268
15 H 0.080 0.920
16 C 0.016 3.984
17 N -0.901 5.901
18 Si 0.920 3.080
19 H -0.283 1.283
20 H -0.286 1.286
21 H -0.277 1.277
22 H 0.068 0.932
23 H 0.062 0.938
24 H 0.061 0.939
25 H 0.048 0.952
26 H 0.050 0.950
27 H 0.081 0.919
28 H 0.067 0.933
29 H 0.177 0.823
30 H -0.002 1.002
31 H 0.063 0.937
32 H 0.054 0.946
33 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.170 -0.088 -2.355 11.416
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.017 4.017
3 O -0.317 6.317
4 C 0.053 3.947
5 C -0.207 4.207
6 C 0.008 3.992
7 N -0.250 5.250
8 C 0.067 3.933
9 Cl 0.020 6.980
10 N -0.243 5.243
11 C 0.234 3.766
12 N -0.264 5.264
13 C 0.025 3.975
14 C -0.395 4.395
15 H 0.098 0.902
16 C -0.183 4.183
17 N -0.545 5.545
18 Si 0.749 3.251
19 H -0.209 1.209
20 H -0.211 1.211
21 H -0.202 1.202
22 H 0.087 0.913
23 H 0.081 0.919
24 H 0.080 0.920
25 H 0.066 0.934
26 H 0.068 0.932
27 H 0.098 0.902
28 H 0.085 0.915
29 H 0.193 0.807
30 H 0.016 0.984
31 H 0.082 0.918
32 H 0.072 0.928
33 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -10.752 1.003 -2.373 11.056
hybrid contribution 0.449 -1.195 0.857 1.538
sum -10.303 -0.192 -1.516 10.415
Atomic orbital electron populations
1.21740 0.94018 1.01994 1.02968 1.22402 0.95108 0.83748 1.00420
1.87717 1.21661 1.26599 1.95694 1.20845 0.79701 0.91757 1.02404
1.21999 0.95579 0.97430 1.05717 1.22812 1.00480 0.85425 0.90448
1.67831 1.18042 1.21344 1.17763 1.23003 0.85944 0.88498 0.95838
1.98381 1.92479 1.10802 1.96376 1.68487 1.38378 1.02601 1.14877
1.18411 0.88324 0.85330 0.84562 1.41791 1.39666 1.38163 1.06811
1.21241 0.96434 0.98061 0.81791 1.19175 1.10893 1.24317 0.85119
0.90241 1.24959 0.95778 0.99367 0.98243 1.70154 1.16389 1.38942
1.29020 0.86016 0.77616 0.79435 0.82077 1.20918 1.21146 1.20175
0.91334 0.91919 0.91978 0.93356 0.93168 0.90150 0.91541 0.80656
0.98351 0.91839 0.92782 0.93051
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 30.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16
2 C 0.06 0.70 6.66 37.16 0.25 0.95 16
3 O -0.40 -5.85 8.94 -35.23 -0.31 -6.16 16
4 C 0.13 2.20 5.85 36.01 0.21 2.41 16
5 C -0.20 -3.80 5.93 -104.11 -0.62 -4.42 16
6 C 0.17 3.02 10.63 -17.28 -0.18 2.84 16
7 N -0.53 -10.09 10.40 -11.71 -0.12 -10.21 16
8 C 0.36 7.35 8.18 -91.98 -0.75 6.60 16
9 Cl -0.01 -0.13 29.27 -51.86 -1.52 -1.65 16
10 N -0.52 -11.90 10.44 -10.85 -0.11 -12.01 16
11 C 0.47 10.60 5.99 -154.72 -0.93 9.67 16
12 N -0.54 -13.32 2.49 -122.22 -0.30 -13.63 16
13 C 0.17 3.97 8.95 59.85 0.54 4.51 16
14 C -0.27 -6.96 9.53 -15.05 -0.14 -7.10 16
15 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16
16 C 0.02 0.41 5.40 -17.45 -0.09 0.32 16
17 N -0.90 -24.13 9.60 55.49 0.53 -23.60 16
18 Si 0.92 20.54 29.56 -169.99 -5.02 15.52 16
19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16
21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
27 H 0.08 1.47 7.89 -51.93 -0.41 1.06 16
28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16
29 H 0.18 2.60 7.13 -52.48 -0.37 2.22 16
30 H 0.00 -0.05 7.90 -51.93 -0.41 -0.46 16
31 H 0.06 1.66 6.81 -51.93 -0.35 1.31 16
32 H 0.05 1.30 7.33 -51.93 -0.38 0.92 16
33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16
LS Contribution 301.48 15.07 4.54 4.54
Total: -1.00 -27.94 301.48 -7.67 -35.61
By element:
Atomic # 1 Polarization: 0.84 SS G_CDS: -4.01 Total: -3.17 kcal
Atomic # 6 Polarization: 16.10 SS G_CDS: -1.34 Total: 14.76 kcal
Atomic # 7 Polarization: -59.44 SS G_CDS: -0.01 Total: -59.45 kcal
Atomic # 8 Polarization: -5.85 SS G_CDS: -0.31 Total: -6.16 kcal
Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal
Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.65 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -27.94 -7.67 -35.61 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166799287.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.633 kcal
(2) G-P(sol) polarization free energy of solvation -27.939 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.694 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.612 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds