Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46844 * 2 1 4 4 C 1.42901 * 113.99499 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.46665 * 180.02562 * 4 3 2 6 6 C 1.38173 * 120.82468 * 355.06779 * 5 4 3 7 7 N 1.32528 * 119.21491 * 179.70161 * 6 5 4 8 8 C 1.31955 * 121.00519 * 0.61368 * 7 6 5 9 9 Cl 1.73597 * 119.09650 * 179.68485 * 8 7 6 10 10 N 1.31837 * 121.80891 * 359.66027 * 8 7 6 11 11 C 1.33051 * 120.67468 * 0.02562 * 10 8 7 12 12 N 1.38528 * 120.52825 * 179.97438 * 11 10 8 13 13 C 1.46503 * 119.99611 * 274.68772 * 12 11 10 14 14 C 1.36930 * 120.00331 * 94.69085 * 12 11 10 15 15 H 1.08004 * 119.99822 * 6.73426 * 14 12 11 16 16 C 1.38850 * 120.00376 * 186.73970 * 14 12 11 17 17 N 1.31536 * 119.99663 * 6.86257 * 16 14 12 18 18 Si 1.86796 * 120.00251 * 186.85901 * 16 14 12 19 19 H 1.48504 * 109.46917 * 89.99897 * 18 16 14 20 20 H 1.48497 * 109.47203 * 210.00006 * 18 16 14 21 21 H 1.48501 * 109.47312 * 330.00364 * 18 16 14 22 22 H 1.09004 * 109.46785 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47375 * 299.99929 * 1 2 3 24 24 H 1.09001 * 109.47289 * 60.00457 * 1 2 3 25 25 H 1.09001 * 109.47233 * 240.00365 * 2 1 3 26 26 H 1.08996 * 109.47219 * 120.00274 * 2 1 3 27 27 H 1.08999 * 109.46976 * 299.99371 * 4 3 2 28 28 H 1.08990 * 109.47222 * 60.00112 * 4 3 2 29 29 H 1.08003 * 120.39529 * 359.97438 * 6 5 4 30 30 H 1.08998 * 109.47609 * 354.22395 * 13 12 11 31 31 H 1.08998 * 109.47132 * 114.22518 * 13 12 11 32 32 H 1.09002 * 109.47248 * 234.22247 * 13 12 11 33 33 H 0.96999 * 119.99769 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 6 2.8597 3.9051 -0.1009 7 7 3.2366 5.1756 -0.0911 8 6 4.5107 5.5060 0.0012 9 17 4.9495 7.1856 0.0013 10 7 5.4597 4.5955 0.0939 11 6 5.1589 3.2995 0.0968 12 7 6.1585 2.3453 0.1939 13 6 6.8563 1.8905 -1.0113 14 6 6.4944 1.8273 1.4161 15 1 5.9099 2.0795 2.2886 16 6 7.5864 0.9779 1.5339 17 7 8.3778 0.7773 0.5026 18 14 7.9319 0.1203 3.1570 19 1 7.2270 -1.1864 3.1862 20 1 9.3933 -0.1023 3.2981 21 1 7.4498 0.9678 4.2771 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8340 0.9765 0.8892 28 1 3.8332 0.9768 -0.8907 29 1 1.8144 3.6459 -0.1824 30 1 6.3884 2.3326 -1.8909 31 1 7.9014 2.1963 -0.9633 32 1 6.7984 0.8039 -1.0765 33 1 9.1409 0.1842 0.5850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = 12.504593 kcal Electronic energy + Delta-G solvation = -18752.059862 eV Core-core repulsion = 15646.778098 eV Total energy + Delta-G solvation = -3105.281765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.10736 -39.00477 -38.18269 -37.64971 -34.66861 -34.15945 -32.54105 -31.39947 -28.26129 -27.62062 -26.38011 -23.83774 -23.57809 -23.18206 -19.61441 -19.12601 -18.35168 -17.19867 -17.09606 -16.73798 -16.46051 -16.22264 -15.62131 -15.11123 -14.99105 -14.51480 -14.17207 -13.87260 -13.30898 -13.18687 -12.93118 -12.77765 -12.63995 -12.50499 -12.33086 -12.19210 -12.18532 -12.10631 -11.91853 -11.61005 -10.89917 -10.75627 -10.42323 -9.98975 -9.41243 -7.94149 -5.52111 -0.31120 0.01380 0.36985 1.45621 1.47515 1.56151 2.30310 2.50467 2.56471 2.86874 3.16837 3.44405 3.68893 3.87394 4.02897 4.23902 4.31332 4.47047 4.49185 4.58823 4.60762 4.72668 5.00379 5.12168 5.12711 5.27945 5.34930 5.46057 5.63663 5.87097 6.11335 6.21242 6.86756 6.91736 7.59655 7.91598 9.02504 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.008526 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.288662 B = 3283.386610 C = 5334.475262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.399 6.399 4 C 0.143 3.857 5 C -0.194 4.194 6 C 0.187 3.813 7 N -0.526 5.526 8 C 0.353 3.647 9 Cl 0.017 6.983 10 N -0.553 5.553 11 C 0.445 3.555 12 N -0.558 5.558 13 C 0.186 3.814 14 C -0.277 4.277 15 H 0.073 0.927 16 C -0.029 4.029 17 N -0.927 5.927 18 Si 0.981 3.019 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.275 1.275 22 H 0.090 0.910 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.210 0.790 30 H 0.015 0.985 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.182 -0.254 -2.098 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.319 6.319 4 C 0.066 3.934 5 C -0.203 4.203 6 C 0.023 3.977 7 N -0.243 5.243 8 C 0.058 3.942 9 Cl 0.045 6.955 10 N -0.275 5.275 11 C 0.210 3.790 12 N -0.279 5.279 13 C 0.043 3.957 14 C -0.405 4.405 15 H 0.091 0.909 16 C -0.225 4.225 17 N -0.572 5.572 18 Si 0.807 3.193 19 H -0.198 1.198 20 H -0.215 1.215 21 H -0.201 1.201 22 H 0.108 0.892 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.227 0.773 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.797 0.857 -2.120 13.000 hybrid contribution 0.956 -1.032 0.741 1.590 sum -11.841 -0.176 -1.379 11.922 Atomic orbital electron populations 1.21744 0.91886 1.03489 1.03034 1.22699 0.96769 0.82321 1.00880 1.87695 1.19836 1.28644 1.95709 1.20566 0.81149 0.90107 1.01605 1.22092 0.94340 0.99066 1.04780 1.23343 1.01532 0.84499 0.88344 1.67977 1.17181 1.21940 1.17241 1.23189 0.85979 0.89324 0.95729 1.98382 1.92437 1.08484 1.96221 1.68290 1.39801 1.03321 1.16138 1.18616 0.88981 0.85079 0.86348 1.41757 1.40437 1.39308 1.06349 1.20907 0.94831 0.97421 0.82542 1.19304 1.11019 1.24457 0.85732 0.90870 1.25683 0.95613 1.00081 1.01168 1.70310 1.16733 1.39587 1.30553 0.85090 0.77009 0.78688 0.78518 1.19787 1.21548 1.20059 0.89175 0.92042 0.91679 0.92576 0.93117 0.91736 0.91522 0.77314 0.96652 0.94859 0.93819 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.05 1.05 6.66 71.98 0.48 1.53 16 3 O -0.40 -10.86 8.94 -148.98 -1.33 -12.19 16 4 C 0.14 4.70 5.85 71.24 0.42 5.12 16 5 C -0.19 -7.23 5.93 -19.53 -0.12 -7.35 16 6 C 0.19 6.12 10.63 84.57 0.90 7.02 16 7 N -0.53 -18.85 10.40 -190.96 -1.99 -20.84 16 8 C 0.35 13.89 8.18 180.82 1.48 15.37 16 9 Cl 0.02 0.57 29.27 -2.72 -0.08 0.49 16 10 N -0.55 -25.15 10.44 -188.25 -1.97 -27.11 16 11 C 0.45 20.02 5.99 133.16 0.80 20.82 16 12 N -0.56 -27.71 2.49 -540.59 -1.35 -29.05 16 13 C 0.19 9.04 8.95 127.77 1.14 10.19 16 14 C -0.28 -14.63 9.53 84.04 0.80 -13.83 16 15 H 0.07 3.85 7.84 -2.91 -0.02 3.83 16 16 C -0.03 -1.51 5.40 84.88 0.46 -1.06 16 17 N -0.93 -50.69 9.60 21.65 0.21 -50.49 16 18 Si 0.98 42.39 29.56 68.60 2.03 44.42 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 22 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 2.35 7.89 -2.39 -0.02 2.33 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.21 5.41 7.13 -2.91 -0.02 5.39 16 30 H 0.01 0.66 7.90 -2.39 -0.02 0.64 16 31 H 0.03 1.80 6.81 -2.39 -0.02 1.78 16 32 H 0.04 2.16 7.33 -2.39 -0.02 2.14 16 33 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -59.52 301.48 3.74 -55.78 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.12 Total: 2.74 kcal Atomic # 6 Polarization: 29.17 SS G_CDS: 7.10 Total: 36.26 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -5.09 Total: -127.49 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -1.33 Total: -12.19 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -0.08 Total: 0.49 kcal Total: -59.52 3.74 -55.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.280 kcal (2) G-P(sol) polarization free energy of solvation -59.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds