Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65600 * 120.00070 * 2 1 4 4 O 1.42104 * 106.39998 * 311.46012 * 3 2 1 5 5 O 1.42101 * 106.40720 * 178.53757 * 3 2 1 6 6 C 1.76201 * 107.21743 * 64.99483 * 3 2 1 7 7 C 1.38878 * 120.33588 * 269.98125 * 6 3 2 8 8 C 1.38310 * 118.50971 * 179.75246 * 7 6 3 9 9 C 1.39228 * 119.08729 * 0.53106 * 8 7 6 10 10 N 1.38839 * 119.71046 * 179.73306 * 9 8 7 11 11 C 1.46501 * 119.99549 * 184.72893 * 10 9 8 12 12 C 1.36909 * 120.00269 * 4.72595 * 10 9 8 13 13 H 1.08005 * 119.99695 * 338.47141 * 12 10 9 14 14 C 1.38807 * 120.00076 * 158.19484 * 12 10 9 15 15 N 1.31566 * 120.00161 * 350.39340 * 14 12 10 16 16 Si 1.86805 * 120.00186 * 170.39601 * 14 12 10 17 17 H 1.48498 * 109.46917 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47205 * 119.99770 * 16 14 12 19 19 H 1.48498 * 109.46863 * 240.00362 * 16 14 12 20 20 N 1.32500 * 120.57475 * 359.45783 * 9 8 7 21 21 C 1.31883 * 121.62236 * 0.27289 * 20 9 8 22 22 H 1.09001 * 109.47532 * 299.99573 * 1 2 3 23 23 H 1.08998 * 109.47449 * 60.00245 * 1 2 3 24 24 H 1.09008 * 109.47156 * 180.02562 * 1 2 3 25 25 H 0.97004 * 120.00638 * 180.02562 * 2 1 3 26 26 H 1.08000 * 120.74681 * 0.04634 * 7 6 3 27 27 H 1.08001 * 120.45847 * 180.26447 * 8 7 6 28 28 H 1.09004 * 109.46707 * 265.92844 * 11 10 9 29 29 H 1.08992 * 109.47444 * 25.93256 * 11 10 9 30 30 H 1.09002 * 109.46891 * 145.93319 * 11 10 9 31 31 H 0.97007 * 120.00210 * 180.02562 * 15 14 12 32 32 H 1.08000 * 119.56928 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4341 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6738 1.1004 0.0348 6 6 1.9376 2.2415 1.5253 7 6 0.8557 3.1064 1.6257 8 6 0.6084 3.7158 2.8424 9 6 1.4545 3.4517 3.9161 10 7 1.2216 4.0608 5.1418 11 6 2.1654 3.8695 6.2458 12 6 0.1099 4.8401 5.3188 13 1 -0.3911 5.2682 4.4631 14 6 -0.3764 5.0753 6.5974 15 7 0.1087 4.4040 7.6196 16 14 -1.7199 6.3450 6.8668 17 1 -2.0904 6.9573 5.5657 18 1 -2.9109 5.6869 7.4616 19 1 -1.2261 7.4004 7.7873 20 7 2.4769 2.6199 3.7798 21 6 2.7328 2.0209 2.6331 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9500 -0.8400 -0.0004 26 1 0.2188 3.2951 0.7742 27 1 -0.2270 4.3907 2.9570 28 1 1.8305 3.0417 6.8709 29 1 3.1535 3.6451 5.8444 30 1 2.2143 4.7796 6.8438 31 1 -0.2315 4.5681 8.5131 32 1 3.5749 1.3487 2.5592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166801694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -23.192615 kcal Electronic energy + Delta-G solvation = -18699.853369 eV Core-core repulsion = 15595.067364 eV Total energy + Delta-G solvation = -3104.786005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.23480 -36.71506 -36.26930 -35.34103 -34.71182 -32.48368 -31.46390 -29.33535 -26.90192 -25.79718 -24.57598 -22.60834 -21.26613 -19.18729 -17.93931 -17.44483 -17.12401 -16.27932 -15.99256 -15.29459 -14.87366 -14.27906 -13.94826 -13.83082 -13.63949 -13.38435 -12.65409 -12.51302 -12.39063 -12.22779 -11.74416 -11.63103 -11.52845 -11.44797 -11.34023 -11.06948 -10.88376 -10.63558 -10.31425 -9.83301 -9.39145 -9.27285 -8.90557 -8.47438 -7.33993 -6.81626 -4.22996 1.02362 1.81092 2.33810 2.91207 2.95661 3.00758 3.56471 3.67886 4.21853 4.41582 4.46238 4.88720 4.92544 5.20006 5.36645 5.58293 5.63959 5.81568 5.91920 6.11928 6.18073 6.47026 6.61336 6.70203 6.73277 6.87111 7.00137 7.08244 7.14746 7.37345 7.69563 8.07300 8.68008 8.79778 9.31695 10.13091 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.004839 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.588352 B = 5784.631093 C = 6152.293555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.129 6.129 3 S 2.710 3.290 4 O -0.980 6.980 5 O -0.981 6.981 6 C -0.854 4.854 7 C 0.042 3.958 8 C -0.256 4.256 9 C 0.365 3.635 10 N -0.383 5.383 11 C 0.116 3.884 12 C -0.313 4.313 13 H 0.110 0.890 14 C 0.035 3.965 15 N -0.851 5.851 16 Si 0.940 3.060 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.274 1.274 20 N -0.572 5.572 21 C 0.257 3.743 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.411 0.589 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.278 0.722 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 -5.274 -6.846 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.886 5.886 3 S 2.803 3.197 4 O -0.970 6.970 5 O -0.971 6.971 6 C -0.956 4.956 7 C 0.016 3.984 8 C -0.283 4.283 9 C 0.121 3.879 10 N -0.063 5.063 11 C -0.027 4.027 12 C -0.442 4.442 13 H 0.127 0.873 14 C -0.174 4.174 15 N -0.483 5.483 16 Si 0.765 3.235 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.200 1.200 20 N -0.292 5.292 21 C 0.084 3.916 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.244 0.756 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.574 -4.705 -6.103 7.728 hybrid contribution -1.353 0.373 0.405 1.461 sum -1.927 -4.332 -5.698 7.413 Atomic orbital electron populations 1.21375 0.79134 1.03333 1.01973 1.55495 1.15797 1.24650 1.92661 1.00940 0.72325 0.72180 0.74209 1.93499 1.79010 1.68400 1.56108 1.93514 1.31571 1.83912 1.88145 1.30127 1.15722 1.27481 1.22294 1.20512 0.91935 0.89909 0.96054 1.21117 1.04736 1.09254 0.93217 1.18524 0.91296 0.90357 0.87734 1.42995 1.19538 1.36424 1.07296 1.21608 0.90113 1.02583 0.88393 1.19995 1.04476 1.25033 0.94670 0.87275 1.25600 0.98839 0.97900 0.95015 1.70125 1.40896 1.36819 1.00471 0.85633 0.79306 0.79298 0.79275 1.18660 1.20029 1.19956 1.67157 1.21816 1.14132 1.26125 1.21690 0.92964 0.91205 0.85719 0.91999 0.91886 0.90730 0.75613 0.85762 0.85488 0.91703 0.93283 0.91424 0.91139 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.14 59.84 0.67 1.59 16 2 N -1.13 -13.52 6.19 -16.64 -0.10 -13.62 16 3 S 2.71 43.25 5.75 -107.50 -0.62 42.63 16 4 O -0.98 -17.95 17.08 -57.17 -0.98 -18.92 16 5 O -0.98 -17.63 17.30 -57.17 -0.99 -18.62 16 6 C -0.85 -15.68 5.97 -39.38 -0.23 -15.92 16 7 C 0.04 0.79 9.64 -39.32 -0.38 0.41 16 8 C -0.26 -5.45 9.32 -39.19 -0.37 -5.82 16 9 C 0.36 8.53 7.33 -155.06 -1.14 7.39 16 10 N -0.38 -9.30 3.12 -122.43 -0.38 -9.68 16 11 C 0.12 2.66 8.70 59.85 0.52 3.18 16 12 C -0.31 -7.52 9.14 -15.07 -0.14 -7.66 16 13 H 0.11 2.50 5.96 -52.48 -0.31 2.19 16 14 C 0.04 0.81 5.16 -17.45 -0.09 0.72 16 15 N -0.85 -20.51 10.46 55.49 0.58 -19.93 16 16 Si 0.94 17.93 29.56 -169.99 -5.03 12.90 16 17 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 N -0.57 -12.85 9.09 -12.43 -0.11 -12.97 16 21 C 0.26 5.07 10.68 -17.57 -0.19 4.88 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 24 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.41 3.93 8.96 -34.46 -0.31 3.62 16 26 H 0.12 2.04 7.70 -52.49 -0.40 1.64 16 27 H 0.13 2.59 6.08 -52.49 -0.32 2.27 16 28 H 0.06 1.55 7.45 -51.93 -0.39 1.16 16 29 H 0.05 1.06 7.32 -51.93 -0.38 0.68 16 30 H 0.07 1.56 7.09 -51.93 -0.37 1.19 16 31 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16 32 H 0.15 2.51 7.62 -52.49 -0.40 2.11 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -29.92 287.82 -7.92 -37.84 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.28 Total: 7.26 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.34 Total: -11.21 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.02 Total: -56.20 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -1.97 Total: -37.55 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: 43.25 SS G_CDS: -0.62 Total: 42.63 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.92 -7.92 -37.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.644 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds