Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65600 * 120.00070 * 2 1 4 4 O 1.42104 * 106.39998 * 311.46012 * 3 2 1 5 5 O 1.42101 * 106.40720 * 178.53757 * 3 2 1 6 6 C 1.76201 * 107.21743 * 64.99483 * 3 2 1 7 7 C 1.38878 * 120.33588 * 269.98125 * 6 3 2 8 8 C 1.38310 * 118.50971 * 179.75246 * 7 6 3 9 9 C 1.39228 * 119.08729 * 0.53106 * 8 7 6 10 10 N 1.38839 * 119.71046 * 179.73306 * 9 8 7 11 11 C 1.46501 * 119.99549 * 184.72893 * 10 9 8 12 12 C 1.36909 * 120.00269 * 4.72595 * 10 9 8 13 13 H 1.08005 * 119.99695 * 338.47141 * 12 10 9 14 14 C 1.38807 * 120.00076 * 158.19484 * 12 10 9 15 15 N 1.31566 * 120.00161 * 350.39340 * 14 12 10 16 16 Si 1.86805 * 120.00186 * 170.39601 * 14 12 10 17 17 H 1.48498 * 109.46917 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47205 * 119.99770 * 16 14 12 19 19 H 1.48498 * 109.46863 * 240.00362 * 16 14 12 20 20 N 1.32500 * 120.57475 * 359.45783 * 9 8 7 21 21 C 1.31883 * 121.62236 * 0.27289 * 20 9 8 22 22 H 1.09001 * 109.47532 * 299.99573 * 1 2 3 23 23 H 1.08998 * 109.47449 * 60.00245 * 1 2 3 24 24 H 1.09008 * 109.47156 * 180.02562 * 1 2 3 25 25 H 0.97004 * 120.00638 * 180.02562 * 2 1 3 26 26 H 1.08000 * 120.74681 * 0.04634 * 7 6 3 27 27 H 1.08001 * 120.45847 * 180.26447 * 8 7 6 28 28 H 1.09004 * 109.46707 * 265.92844 * 11 10 9 29 29 H 1.08992 * 109.47444 * 25.93256 * 11 10 9 30 30 H 1.09002 * 109.46891 * 145.93319 * 11 10 9 31 31 H 0.97007 * 120.00210 * 180.02562 * 15 14 12 32 32 H 1.08000 * 119.56928 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4341 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6738 1.1004 0.0348 6 6 1.9376 2.2415 1.5253 7 6 0.8557 3.1064 1.6257 8 6 0.6084 3.7158 2.8424 9 6 1.4545 3.4517 3.9161 10 7 1.2216 4.0608 5.1418 11 6 2.1654 3.8695 6.2458 12 6 0.1099 4.8401 5.3188 13 1 -0.3911 5.2682 4.4631 14 6 -0.3764 5.0753 6.5974 15 7 0.1087 4.4040 7.6196 16 14 -1.7199 6.3450 6.8668 17 1 -2.0904 6.9573 5.5657 18 1 -2.9109 5.6869 7.4616 19 1 -1.2261 7.4004 7.7873 20 7 2.4769 2.6199 3.7798 21 6 2.7328 2.0209 2.6331 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9500 -0.8400 -0.0004 26 1 0.2188 3.2951 0.7742 27 1 -0.2270 4.3907 2.9570 28 1 1.8305 3.0417 6.8709 29 1 3.1535 3.6451 5.8444 30 1 2.2143 4.7796 6.8438 31 1 -0.2315 4.5681 8.5131 32 1 3.5749 1.3487 2.5592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166801694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -44.955490 kcal Electronic energy + Delta-G solvation = -18700.797078 eV Core-core repulsion = 15595.067364 eV Total energy + Delta-G solvation = -3105.729715 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.91676 -38.12680 -37.95303 -36.75685 -35.72175 -34.17867 -33.12139 -31.00423 -28.65254 -26.71469 -26.28556 -24.23833 -22.93477 -20.48285 -19.60211 -18.87674 -18.50295 -17.86027 -17.38633 -16.75479 -16.44765 -15.67867 -15.56778 -15.41610 -15.10981 -14.53772 -14.12064 -14.07307 -13.82043 -13.62079 -13.37963 -13.10597 -13.04999 -12.95121 -12.74050 -12.58514 -12.39490 -12.11607 -11.86742 -11.52329 -10.93236 -10.58994 -10.45958 -10.10230 -9.04546 -8.51136 -6.02636 -0.31291 0.20991 0.69705 1.40184 1.42135 1.54662 2.10811 2.31858 2.68614 2.76341 2.94343 3.22168 3.58828 3.77173 4.12698 4.37530 4.43411 4.53760 4.72809 4.76437 4.86906 4.98907 5.02205 5.06487 5.13059 5.16963 5.23047 5.33398 5.69954 6.04138 6.27342 6.36508 6.97838 7.08496 7.61736 8.46060 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.004839 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.588352 B = 5784.631093 C = 6152.293555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.114 6.114 3 S 2.742 3.258 4 O -0.997 6.997 5 O -0.997 6.997 6 C -0.846 4.846 7 C 0.052 3.948 8 C -0.277 4.277 9 C 0.356 3.644 10 N -0.414 5.414 11 C 0.136 3.864 12 C -0.339 4.339 13 H 0.112 0.888 14 C -0.006 4.006 15 N -0.887 5.887 16 Si 1.006 2.994 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.273 1.273 20 N -0.596 5.596 21 C 0.245 3.755 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.427 0.573 26 H 0.154 0.846 27 H 0.131 0.869 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.279 0.721 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -6.194 -9.034 11.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.876 5.876 3 S 2.832 3.168 4 O -0.986 6.986 5 O -0.987 6.987 6 C -0.944 4.944 7 C 0.026 3.974 8 C -0.304 4.304 9 C 0.114 3.886 10 N -0.098 5.098 11 C -0.007 4.007 12 C -0.467 4.467 13 H 0.129 0.871 14 C -0.210 4.210 15 N -0.521 5.521 16 Si 0.828 3.172 17 H -0.179 1.179 18 H -0.200 1.200 19 H -0.198 1.198 20 N -0.316 5.316 21 C 0.075 3.925 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.126 0.874 25 H 0.263 0.737 26 H 0.172 0.828 27 H 0.149 0.851 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.203 -5.646 -8.317 10.124 hybrid contribution -1.051 0.421 0.746 1.356 sum -2.254 -5.225 -7.571 9.471 Atomic orbital electron populations 1.21655 0.77643 1.05694 1.01943 1.55076 1.16680 1.23842 1.91976 1.00075 0.71684 0.72345 0.72698 1.93486 1.79325 1.69775 1.56047 1.93494 1.33105 1.84213 1.87929 1.30723 1.14160 1.26447 1.23108 1.20908 0.91955 0.88497 0.96028 1.21292 1.05108 1.10285 0.93736 1.18954 0.91590 0.90110 0.87982 1.43076 1.20402 1.38545 1.07730 1.21303 0.90157 1.01170 0.88060 1.20232 1.05140 1.26066 0.95267 0.87057 1.26444 1.00671 0.99392 0.94490 1.70215 1.42560 1.38541 1.00798 0.84663 0.76495 0.76841 0.79191 1.17912 1.19950 1.19801 1.67184 1.22052 1.14658 1.27735 1.22226 0.93801 0.91027 0.85422 0.92638 0.91361 0.87372 0.73748 0.82829 0.85148 0.93686 0.92873 0.92500 0.91069 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 11.14 127.77 1.42 2.72 16 2 N -1.11 -22.36 6.19 -206.54 -1.28 -23.64 16 3 S 2.74 78.70 5.75 -56.49 -0.32 78.38 16 4 O -1.00 -33.16 17.08 -128.00 -2.19 -35.34 16 5 O -1.00 -32.83 17.30 -128.00 -2.21 -35.04 16 6 C -0.85 -29.07 5.97 22.40 0.13 -28.93 16 7 C 0.05 1.85 9.64 22.44 0.22 2.07 16 8 C -0.28 -11.66 9.32 22.52 0.21 -11.45 16 9 C 0.36 16.81 7.33 133.11 0.98 17.78 16 10 N -0.41 -20.74 3.12 -541.25 -1.69 -22.43 16 11 C 0.14 6.54 8.70 127.77 1.11 7.66 16 12 C -0.34 -16.75 9.14 84.04 0.77 -15.98 16 13 H 0.11 5.21 5.96 -2.91 -0.02 5.20 16 14 C -0.01 -0.27 5.16 84.87 0.44 0.17 16 15 N -0.89 -44.37 10.46 21.65 0.23 -44.14 16 16 Si 1.01 37.21 29.56 68.60 2.03 39.24 16 17 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 18 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 19 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 20 N -0.60 -26.67 9.09 -193.23 -1.76 -28.43 16 21 C 0.25 9.27 10.68 84.66 0.90 10.17 16 22 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 24 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.43 6.39 8.96 -96.74 -0.87 5.52 16 26 H 0.15 4.55 7.70 -2.91 -0.02 4.53 16 27 H 0.13 5.31 6.08 -2.91 -0.02 5.30 16 28 H 0.04 2.27 7.45 -2.38 -0.02 2.25 16 29 H 0.05 2.40 7.32 -2.39 -0.02 2.38 16 30 H 0.06 2.76 7.09 -2.39 -0.02 2.75 16 31 H 0.28 13.00 8.31 -92.70 -0.77 12.23 16 32 H 0.17 5.51 7.62 -2.91 -0.02 5.49 16 Total: -1.00 -64.36 287.82 -0.72 -65.08 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.29 Total: 22.13 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 6.18 Total: -15.79 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -4.50 Total: -118.64 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -4.40 Total: -70.39 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Atomic # 16 Polarization: 78.70 SS G_CDS: -0.32 Total: 78.38 kcal Total: -64.36 -0.72 -65.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.121 kcal (2) G-P(sol) polarization free energy of solvation -64.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds