Wall clock time and date at job start Mon Mar 30 2020 01:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35782 * 117.00122 * 2 1 4 4 N 1.32265 * 120.09823 * 0.28729 * 3 2 1 5 5 C 1.32400 * 120.03480 * 180.29961 * 4 3 2 6 6 C 1.38120 * 120.23472 * 359.66316 * 5 4 3 7 7 Cl 1.73604 * 119.90095 * 180.02562 * 6 5 4 8 8 N 1.32466 * 120.20062 * 0.04188 * 6 5 4 9 9 C 1.32493 * 119.95851 * 359.97438 * 8 6 5 10 10 N 1.39183 * 120.11127 * 179.97438 * 9 8 6 11 11 C 1.46500 * 120.00333 * 359.97438 * 10 9 8 12 12 C 1.53006 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00347 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99775 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46867 * 90.00546 * 18 16 14 20 20 H 1.48501 * 109.47216 * 210.00404 * 18 16 14 21 21 H 1.48499 * 109.47135 * 330.00745 * 18 16 14 22 22 H 1.08999 * 109.46906 * 60.00398 * 1 2 3 23 23 H 1.08997 * 109.47210 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47098 * 300.00537 * 1 2 3 25 25 H 1.08000 * 119.88248 * 179.68808 * 5 4 3 26 26 H 0.97010 * 119.99758 * 180.02562 * 10 9 8 27 27 H 1.09000 * 109.47175 * 60.00144 * 11 10 9 28 28 H 1.09001 * 109.47297 * 299.99652 * 11 10 9 29 29 H 1.08993 * 109.46955 * 300.00226 * 12 11 10 30 30 H 1.09000 * 109.47050 * 60.00054 * 12 11 10 31 31 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 32 32 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 33 33 H 0.96991 * 119.99882 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 7 1.3270 2.3203 0.0057 5 6 1.9294 3.4993 -0.0003 6 6 3.3085 3.5757 -0.0055 7 17 4.0893 5.1263 -0.0127 8 7 4.0371 2.4695 -0.0054 9 6 3.4425 1.2855 0.0003 10 7 4.2050 0.1212 -0.0001 11 6 5.6676 0.2033 -0.0074 12 6 6.2578 -1.2084 -0.0069 13 6 7.7853 -1.1224 -0.0152 14 6 8.3666 -2.5129 -0.0154 15 1 7.7120 -3.3718 -0.0105 16 6 9.7341 -2.6884 -0.0217 17 7 10.2414 -3.9018 -0.0223 18 14 10.8664 -1.2027 -0.0307 19 1 11.1734 -0.8058 1.3669 20 1 12.1274 -1.5456 -0.7363 21 1 10.1986 -0.0756 -0.7300 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.3403 4.4045 -0.0007 26 1 3.7678 -0.7449 0.0036 27 1 6.0059 0.7392 0.8795 28 1 5.9973 0.7342 -0.9005 29 1 5.9281 -1.7396 0.8858 30 1 5.9195 -1.7438 -0.8941 31 1 8.1146 -0.5913 -0.9082 32 1 8.1239 -0.5868 0.8717 33 1 11.2035 -4.0252 -0.0271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:06 Heat of formation + Delta-G solvation = -22.851329 kcal Electronic energy + Delta-G solvation = -17787.219102 eV Core-core repulsion = 14680.404190 eV Total energy + Delta-G solvation = -3106.814913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.41186 -39.43672 -38.14508 -37.60794 -35.78405 -34.58314 -33.44526 -31.04716 -28.64882 -28.40060 -25.45778 -24.77021 -23.63561 -22.09547 -19.59430 -19.50091 -18.84253 -18.65334 -17.47233 -16.57598 -16.43253 -16.34922 -15.90439 -15.53849 -15.37295 -14.83838 -14.69159 -14.10239 -13.77551 -13.30289 -13.06537 -12.91589 -12.75304 -12.53003 -12.40755 -12.39226 -12.04077 -11.85394 -11.73137 -11.56514 -11.32438 -10.75719 -10.66449 -10.51156 -8.66329 -8.28847 -6.33059 -0.29964 -0.00202 0.60691 1.37900 1.39457 1.51424 1.83143 2.01666 2.37198 2.48201 3.02971 3.07026 3.34782 3.51764 4.01804 4.12025 4.21761 4.45033 4.46929 4.51883 4.66318 4.81698 4.90614 4.93507 5.03885 5.44077 5.56305 5.63038 5.72322 5.77418 6.01588 6.28152 6.40775 6.75104 6.77847 7.31843 8.87791 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.004072 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.276274 B = 6873.819357 C = 8263.034620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.222 3.778 4 N -0.452 5.452 5 C 0.042 3.958 6 C 0.126 3.874 7 Cl -0.008 7.008 8 N -0.499 5.499 9 C 0.370 3.630 10 N -0.696 5.696 11 C 0.142 3.858 12 C -0.103 4.103 13 C -0.009 4.009 14 C -0.532 4.532 15 H 0.035 0.965 16 C 0.005 3.995 17 N -0.952 5.952 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.246 1.246 22 H 0.062 0.938 23 H 0.124 0.876 24 H 0.062 0.938 25 H 0.210 0.790 26 H 0.423 0.577 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.062 16.970 0.027 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.217 6.217 3 C 0.030 3.970 4 N -0.181 5.181 5 C -0.116 4.116 6 C -0.038 4.038 7 Cl 0.020 6.980 8 N -0.227 5.227 9 C 0.125 3.875 10 N -0.332 5.332 11 C 0.018 3.982 12 C -0.141 4.141 13 C -0.047 4.047 14 C -0.570 4.570 15 H 0.053 0.947 16 C -0.192 4.192 17 N -0.592 5.592 18 Si 0.772 3.228 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.169 1.169 22 H 0.081 0.919 23 H 0.142 0.858 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.262 0.738 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.573 16.786 0.025 26.552 hybrid contribution 0.678 -0.078 0.017 0.682 sum -19.895 16.708 0.043 25.980 Atomic orbital electron populations 1.23168 0.74958 1.05113 1.02657 1.86218 1.24971 1.22425 1.88045 1.20239 0.88467 0.87030 1.01246 1.68128 1.37876 0.97851 1.14237 1.23258 0.90187 0.96314 1.01860 1.22492 0.90656 0.88424 1.02206 1.98413 1.82234 1.20912 1.96421 1.67286 1.39346 0.96671 1.19355 1.18379 0.85849 0.87487 0.95750 1.44692 1.05977 1.04593 1.77899 1.21298 0.77824 0.97509 1.01575 1.21490 0.95970 0.94708 1.01902 1.19436 0.93242 0.95099 0.96932 1.21477 0.92205 0.93010 1.50328 0.94684 1.25997 1.00207 0.98874 0.94139 1.70062 1.12925 1.23534 1.52715 0.85683 0.77880 0.80036 0.79232 1.19175 1.21075 1.16904 0.91948 0.85780 0.91948 0.77385 0.73754 0.92056 0.92139 0.92056 0.92079 0.95911 0.96020 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.40 113.37 1.18 1.68 16 2 O -0.31 -6.66 9.74 -91.11 -0.89 -7.54 16 3 C 0.22 5.40 7.52 85.03 0.64 6.04 16 4 N -0.45 -9.83 9.39 -307.65 -2.89 -12.72 16 5 C 0.04 0.80 10.98 84.58 0.93 1.73 16 6 C 0.13 2.92 7.27 84.57 0.62 3.53 16 7 Cl -0.01 -0.16 29.12 -2.72 -0.08 -0.24 16 8 N -0.50 -14.13 9.72 -183.11 -1.78 -15.91 16 9 C 0.37 10.16 7.51 133.16 1.00 11.16 16 10 N -0.70 -19.17 5.70 -344.15 -1.96 -21.13 16 11 C 0.14 4.44 5.72 86.38 0.49 4.93 16 12 C -0.10 -3.77 5.27 30.60 0.16 -3.61 16 13 C -0.01 -0.42 4.04 29.85 0.12 -0.29 16 14 C -0.53 -30.42 9.66 25.60 0.25 -30.17 16 15 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 16 C 0.00 0.27 5.47 84.65 0.46 0.73 16 17 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 18 Si 0.95 44.26 27.47 68.60 1.88 46.15 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 22 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 23 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 0.84 8.11 -2.39 -0.02 0.82 16 25 H 0.21 2.37 8.06 -2.91 -0.02 2.34 16 26 H 0.42 10.50 7.84 -92.70 -0.73 9.78 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 32 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 33 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -67.48 303.60 0.78 -66.70 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.35 Total: 8.44 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.85 Total: -4.28 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -6.33 Total: -109.22 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.89 Total: -7.54 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -67.48 0.78 -66.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.845 kcal (2) G-P(sol) polarization free energy of solvation -67.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds