Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76203 * 100.00010 * 2 1 4 4 N 1.32487 * 119.16296 * 359.97438 * 3 2 1 5 5 C 1.32534 * 120.94107 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.27011 * 0.02562 * 5 4 3 7 7 F 1.35102 * 120.77093 * 179.97438 * 6 5 4 8 8 C 1.39805 * 118.46395 * 0.02562 * 6 5 4 9 9 N 1.38670 * 120.49114 * 180.02562 * 8 6 5 10 10 C 1.46496 * 119.99789 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.46995 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00129 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00204 * 17 15 13 19 19 H 1.48498 * 109.47112 * 210.00472 * 17 15 13 20 20 H 1.48499 * 109.47134 * 330.00583 * 17 15 13 21 21 N 1.32507 * 119.15868 * 180.29728 * 3 2 1 22 22 H 1.09004 * 109.46662 * 300.00200 * 1 2 3 23 23 H 1.09000 * 109.47346 * 59.99723 * 1 2 3 24 24 H 1.08999 * 109.47259 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.36893 * 179.97438 * 5 4 3 26 26 H 0.96998 * 120.00020 * 359.97438 * 9 8 6 27 27 H 1.09001 * 109.47464 * 60.00280 * 10 9 8 28 28 H 1.09001 * 109.47459 * 299.99996 * 10 9 8 29 29 H 1.09001 * 109.47002 * 299.99701 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00138 * 11 10 9 31 31 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 32 32 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 33 33 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0888 2.5720 -0.0005 5 6 1.2783 3.8837 -0.0010 6 6 2.5686 4.3802 -0.0016 7 9 2.7968 5.7118 -0.0027 8 6 3.6319 3.4725 -0.0021 9 7 4.9429 3.9244 -0.0021 10 6 6.0488 2.9637 -0.0021 11 6 7.3799 3.7183 -0.0015 12 6 8.5349 2.7149 -0.0021 13 6 9.8459 3.4581 -0.0022 14 1 9.8544 4.5381 -0.0014 15 6 11.0345 2.7593 -0.0022 16 7 11.0241 1.4442 -0.0026 17 14 12.6596 3.6806 -0.0015 18 1 13.0899 3.9241 1.3988 19 1 13.6883 2.8702 -0.7017 20 1 12.4924 4.9798 -0.7010 21 7 3.3677 2.1701 -0.0060 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.4341 4.5573 -0.0019 26 1 5.1276 4.8767 -0.0022 27 1 5.9862 2.3375 -0.8921 28 1 5.9862 2.3375 0.8879 29 1 7.4428 4.3447 -0.8913 30 1 7.4423 4.3441 0.8886 31 1 8.4722 2.0881 0.8874 32 1 8.4723 2.0893 -0.8926 33 1 11.8603 0.9526 -0.0030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = -11.291958 kcal Electronic energy + Delta-G solvation = -17545.902229 eV Core-core repulsion = 14454.005064 eV Total energy + Delta-G solvation = -3091.897165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.99087 -40.79376 -36.92407 -34.10735 -32.91396 -31.85010 -30.35426 -28.98875 -26.76781 -24.67366 -23.96896 -22.48640 -20.61102 -18.87190 -18.23898 -17.56297 -16.35852 -16.29952 -16.25710 -15.11450 -14.88676 -14.62756 -14.49201 -14.36706 -14.21980 -13.53520 -13.26431 -12.88582 -12.48134 -12.34675 -11.85154 -11.69437 -11.22682 -10.87022 -10.78389 -10.73206 -10.60217 -10.33380 -9.84835 -9.58932 -9.32310 -9.15600 -8.39620 -8.32672 -7.79446 -6.04147 -4.07357 0.58466 1.05723 1.07574 1.97487 2.98841 3.29627 3.36092 3.39073 3.47268 3.80362 4.09123 4.42456 4.60341 4.71716 4.94347 4.99624 5.07307 5.31728 5.55637 5.59419 5.69581 5.98381 6.08485 6.49005 6.52352 6.58248 6.91218 7.00920 7.35999 7.59951 7.71738 7.89859 7.94146 8.35013 8.98984 9.56983 11.07085 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.003480 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.790949 B = 8044.304540 C = 9106.044058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S 0.014 5.986 3 C 0.330 3.670 4 N -0.555 5.555 5 C 0.165 3.835 6 C -0.090 4.090 7 F -0.129 7.129 8 C 0.437 3.563 9 N -0.691 5.691 10 C 0.123 3.877 11 C -0.123 4.123 12 C 0.026 3.974 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.535 5.535 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.105 0.895 25 H 0.176 0.824 26 H 0.415 0.585 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.472 1.386 0.012 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.247 5.753 3 C -0.047 4.047 4 N -0.278 5.278 5 C 0.000 4.000 6 C -0.123 4.123 7 F -0.108 7.108 8 C 0.186 3.814 9 N -0.321 5.321 10 C 0.000 4.000 11 C -0.161 4.161 12 C -0.012 4.012 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.263 5.263 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.123 0.877 25 H 0.193 0.807 26 H 0.252 0.748 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.594 -0.829 0.000 21.610 hybrid contribution 0.454 3.146 0.013 3.179 sum -21.141 2.317 0.014 21.267 Atomic orbital electron populations 1.23573 0.94542 1.06216 1.07225 1.86033 1.06201 0.92897 1.90175 1.24692 0.86077 1.00707 0.93179 1.68783 1.33539 1.02744 1.22707 1.22922 0.94486 0.92032 0.90559 1.18633 0.95203 0.78788 1.19704 1.91477 1.95178 1.29102 1.95036 1.18713 0.86369 0.88358 0.88010 1.45054 1.01457 1.10557 1.75044 1.21793 0.84439 0.91280 1.02464 1.21929 0.93144 1.00006 1.01028 1.19011 0.90755 0.93661 0.97734 1.21193 0.90918 0.92998 1.51107 0.92658 1.25026 0.99313 0.94860 0.95211 1.69962 1.26990 1.05792 1.50441 0.86576 0.83445 0.79753 0.78120 1.20636 1.21164 1.19893 1.68155 1.21628 1.12749 1.23816 0.89095 0.89093 0.87691 0.80659 0.74765 0.91267 0.91280 0.92636 0.92637 0.96191 0.96179 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.62 101.05 0.97 -0.12 16 2 S 0.01 0.16 22.89 -107.50 -2.46 -2.30 16 3 C 0.33 4.63 7.85 -90.94 -0.71 3.91 16 4 N -0.55 -6.89 9.13 -13.50 -0.12 -7.02 16 5 C 0.17 1.84 11.28 -17.24 -0.19 1.65 16 6 C -0.09 -1.16 7.38 -38.99 -0.29 -1.45 16 7 F -0.13 -1.59 16.75 2.25 0.04 -1.55 16 8 C 0.44 6.56 7.52 -154.67 -1.16 5.40 16 9 N -0.69 -10.31 5.70 -60.21 -0.34 -10.65 16 10 C 0.12 2.11 5.73 -4.04 -0.02 2.09 16 11 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 12 C 0.03 0.66 4.97 -27.89 -0.14 0.52 16 13 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 N -0.54 -8.54 9.66 -12.62 -0.12 -8.67 16 22 H 0.09 0.68 8.11 -51.91 -0.42 0.26 16 23 H 0.09 0.68 8.11 -51.92 -0.42 0.26 16 24 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.41 5.47 8.03 -40.82 -0.33 5.14 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -30.89 307.81 -8.85 -39.74 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.09 Total: -0.81 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.10 Total: -3.92 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.15 Total: -52.25 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.46 Total: -2.30 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.89 -8.85 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.449 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds