Wall clock time and date at job start Mon Mar 30 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76203 * 100.00010 * 2 1 4 4 N 1.32487 * 119.16296 * 359.97438 * 3 2 1 5 5 C 1.32534 * 120.94107 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.27011 * 0.02562 * 5 4 3 7 7 F 1.35102 * 120.77093 * 179.97438 * 6 5 4 8 8 C 1.39805 * 118.46395 * 0.02562 * 6 5 4 9 9 N 1.38670 * 120.49114 * 180.02562 * 8 6 5 10 10 C 1.46496 * 119.99789 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.46995 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00129 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00204 * 17 15 13 19 19 H 1.48498 * 109.47112 * 210.00472 * 17 15 13 20 20 H 1.48499 * 109.47134 * 330.00583 * 17 15 13 21 21 N 1.32507 * 119.15868 * 180.29728 * 3 2 1 22 22 H 1.09004 * 109.46662 * 300.00200 * 1 2 3 23 23 H 1.09000 * 109.47346 * 59.99723 * 1 2 3 24 24 H 1.08999 * 109.47259 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.36893 * 179.97438 * 5 4 3 26 26 H 0.96998 * 120.00020 * 359.97438 * 9 8 6 27 27 H 1.09001 * 109.47464 * 60.00280 * 10 9 8 28 28 H 1.09001 * 109.47459 * 299.99996 * 10 9 8 29 29 H 1.09001 * 109.47002 * 299.99701 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00138 * 11 10 9 31 31 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 32 32 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 33 33 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0888 2.5720 -0.0005 5 6 1.2783 3.8837 -0.0010 6 6 2.5686 4.3802 -0.0016 7 9 2.7968 5.7118 -0.0027 8 6 3.6319 3.4725 -0.0021 9 7 4.9429 3.9244 -0.0021 10 6 6.0488 2.9637 -0.0021 11 6 7.3799 3.7183 -0.0015 12 6 8.5349 2.7149 -0.0021 13 6 9.8459 3.4581 -0.0022 14 1 9.8544 4.5381 -0.0014 15 6 11.0345 2.7593 -0.0022 16 7 11.0241 1.4442 -0.0026 17 14 12.6596 3.6806 -0.0015 18 1 13.0899 3.9241 1.3988 19 1 13.6883 2.8702 -0.7017 20 1 12.4924 4.9798 -0.7010 21 7 3.3677 2.1701 -0.0060 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.4341 4.5573 -0.0019 26 1 5.1276 4.8767 -0.0022 27 1 5.9862 2.3375 -0.8921 28 1 5.9862 2.3375 0.8879 29 1 7.4428 4.3447 -0.8913 30 1 7.4423 4.3441 0.8886 31 1 8.4722 2.0881 0.8874 32 1 8.4723 2.0893 -0.8926 33 1 11.8603 0.9526 -0.0030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:37 Heat of formation + Delta-G solvation = -29.878046 kcal Electronic energy + Delta-G solvation = -17546.708182 eV Core-core repulsion = 14454.005064 eV Total energy + Delta-G solvation = -3092.703118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.96356 -41.82833 -38.19816 -35.83248 -34.32677 -33.33036 -31.64721 -29.71805 -28.44840 -25.89867 -25.28220 -23.94286 -22.29332 -19.96588 -19.32916 -18.56051 -18.44178 -17.34357 -17.31530 -16.52590 -16.30219 -16.10931 -15.65948 -15.54269 -15.07944 -14.34478 -14.34339 -14.26881 -13.92674 -13.72281 -13.49889 -12.89209 -12.74760 -12.54097 -12.44495 -12.38509 -11.66684 -11.56837 -11.53118 -11.29980 -11.23008 -10.56790 -10.39781 -9.44343 -8.73808 -8.21086 -6.32564 -0.42539 0.05137 0.15189 1.24075 1.40549 1.41716 1.52702 1.84600 2.40765 2.44150 2.80663 3.11718 3.12579 3.63064 3.68669 4.07718 4.15356 4.16301 4.41439 4.43891 4.50502 4.88630 4.89658 5.01479 5.10276 5.14630 5.45829 5.48924 5.67425 5.76956 5.81857 6.20958 6.29650 6.83737 6.85151 7.36895 8.90892 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.003480 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.790949 B = 8044.304540 C = 9106.044058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.012 6.012 3 C 0.317 3.683 4 N -0.548 5.548 5 C 0.177 3.823 6 C -0.091 4.091 7 F -0.125 7.125 8 C 0.419 3.581 9 N -0.692 5.692 10 C 0.144 3.856 11 C -0.105 4.105 12 C 0.028 3.972 13 C -0.544 4.544 14 H 0.063 0.937 15 C -0.001 4.001 16 N -0.932 5.932 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.262 1.262 21 N -0.568 5.568 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.132 0.868 25 H 0.219 0.781 26 H 0.423 0.577 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.064 0.936 31 H -0.005 1.005 32 H -0.005 1.005 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.946 2.791 0.018 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.221 5.779 3 C -0.059 4.059 4 N -0.271 5.271 5 C 0.011 3.989 6 C -0.125 4.125 7 F -0.104 7.104 8 C 0.169 3.831 9 N -0.324 5.324 10 C 0.020 3.980 11 C -0.143 4.143 12 C -0.010 4.010 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.186 1.186 21 N -0.297 5.297 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.150 0.850 25 H 0.235 0.765 26 H 0.262 0.738 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.104 0.585 0.007 23.112 hybrid contribution 0.760 2.647 0.012 2.754 sum -22.345 3.233 0.019 22.577 Atomic orbital electron populations 1.23667 0.90843 1.08075 1.07479 1.86123 1.10265 0.91858 1.89630 1.25096 0.85850 1.01917 0.93079 1.68889 1.32708 1.03208 1.22254 1.23610 0.95001 0.92029 0.88246 1.18652 0.95201 0.78688 1.19913 1.91488 1.95200 1.28661 1.95041 1.18924 0.86602 0.88833 0.88729 1.44735 1.01079 1.10369 1.76239 1.21284 0.84377 0.91080 1.01253 1.21627 0.92144 0.98672 1.01860 1.18897 0.92620 0.94227 0.95272 1.21665 0.92135 0.93646 1.50756 0.91836 1.25998 1.03487 0.95722 0.94705 1.70101 1.28110 1.07566 1.51471 0.85430 0.78385 0.78650 0.78474 1.19799 1.20852 1.18630 1.68142 1.23030 1.13549 1.24939 0.88748 0.88753 0.84962 0.76455 0.73806 0.92578 0.92581 0.91718 0.91692 0.98706 0.98697 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.62 113.37 1.09 -0.59 16 2 S -0.01 -0.27 22.89 -56.49 -1.29 -1.56 16 3 C 0.32 8.65 7.85 180.46 1.42 10.07 16 4 N -0.55 -12.52 9.13 -196.62 -1.79 -14.32 16 5 C 0.18 3.47 11.28 84.59 0.95 4.42 16 6 C -0.09 -2.20 7.38 22.65 0.17 -2.03 16 7 F -0.12 -2.83 16.75 44.97 0.75 -2.07 16 8 C 0.42 12.43 7.52 133.19 1.00 13.43 16 9 N -0.69 -20.55 5.70 -344.39 -1.96 -22.51 16 10 C 0.14 5.08 5.73 86.38 0.49 5.57 16 11 C -0.11 -4.13 5.27 30.60 0.16 -3.97 16 12 C 0.03 1.44 4.97 29.85 0.15 1.58 16 13 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 16 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 17 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 N -0.57 -18.22 9.66 -193.86 -1.87 -20.10 16 22 H 0.09 1.18 8.11 -2.39 -0.02 1.17 16 23 H 0.09 1.19 8.11 -2.40 -0.02 1.17 16 24 H 0.13 0.98 8.14 -2.40 -0.02 0.96 16 25 H 0.22 2.29 8.06 -2.91 -0.02 2.27 16 26 H 0.42 10.84 8.03 -92.71 -0.74 10.10 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -67.44 307.81 2.66 -64.79 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.38 Total: 7.81 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 6.13 Total: -1.51 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -5.34 Total: -113.51 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.75 Total: -2.07 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -1.29 Total: -1.56 kcal Total: -67.44 2.66 -64.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.909 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds