Wall clock time and date at job start Mon Mar 30 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36051 * 117.00253 * 2 1 4 4 C 1.38694 * 120.88066 * 270.26758 * 3 2 1 5 5 Cl 1.73593 * 120.45084 * 0.02562 * 4 3 2 6 6 N 1.32672 * 119.10444 * 180.25650 * 4 3 2 7 7 C 1.31744 * 121.02359 * 359.74438 * 6 4 3 8 8 N 1.31798 * 121.94569 * 359.97438 * 7 6 4 9 9 C 1.32923 * 120.77874 * 0.02562 * 8 7 6 10 10 N 1.38803 * 120.54826 * 179.97438 * 9 8 7 11 11 C 1.46498 * 119.99861 * 0.27956 * 10 9 8 12 12 C 1.52996 * 109.47059 * 179.72440 * 11 10 9 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47008 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00362 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99653 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00157 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00386 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47111 * 89.99562 * 18 16 14 20 20 H 1.48494 * 109.47201 * 210.00305 * 18 16 14 21 21 H 1.48506 * 109.46710 * 330.00066 * 18 16 14 22 22 H 1.08998 * 109.47397 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47368 * 300.00585 * 1 2 3 24 24 H 1.09013 * 109.46909 * 59.99666 * 1 2 3 25 25 H 1.07996 * 119.02645 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99694 * 179.97438 * 10 9 8 27 27 H 1.09004 * 109.46963 * 299.72235 * 11 10 9 28 28 H 1.08994 * 109.47567 * 59.72388 * 11 10 9 29 29 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 30 30 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 31 31 H 1.08990 * 109.47021 * 299.99845 * 13 12 11 32 32 H 1.09002 * 109.46620 * 60.00037 * 13 12 11 33 33 H 0.96996 * 120.00642 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3649 1.8490 -1.1903 5 17 1.9799 1.1105 -2.7134 6 7 2.9718 3.0280 -1.1492 7 6 3.2689 3.5991 0.0003 8 7 2.9804 3.0333 1.1551 9 6 2.3727 1.8520 1.2009 10 7 2.0716 1.2603 2.4199 11 6 2.4184 1.9409 3.6700 12 6 1.9746 1.0840 4.8572 13 6 2.3373 1.7945 6.1628 14 6 1.8995 0.9507 7.3322 15 1 1.4118 0.0024 7.1614 16 6 2.1227 1.3889 8.6203 17 7 1.7411 0.6524 9.6409 18 14 2.9670 3.0288 8.9160 19 1 1.9462 4.1046 8.9917 20 1 3.7232 2.9731 10.1927 21 1 3.9028 3.3123 7.7983 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 3.7627 4.5595 -0.0039 26 1 1.6276 0.3982 2.4439 27 1 3.4970 2.0921 3.7141 28 1 1.9142 2.9063 3.7101 29 1 0.8960 0.9328 4.8130 30 1 2.4787 0.1185 4.8172 31 1 3.4158 1.9453 6.2068 32 1 1.8333 2.7601 6.2031 33 1 1.8977 0.9608 10.5471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427356.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:14 Heat of formation + Delta-G solvation = -21.433178 kcal Electronic energy + Delta-G solvation = -17928.242934 eV Core-core repulsion = 14821.489517 eV Total energy + Delta-G solvation = -3106.753417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.28049 -39.28231 -38.31748 -37.67630 -35.71541 -34.19524 -33.14844 -31.51506 -28.81256 -27.97918 -25.51742 -24.81492 -23.64636 -22.11351 -19.65581 -19.14864 -18.86256 -18.71810 -17.21746 -16.80302 -16.42523 -16.32762 -15.65420 -15.45680 -15.27681 -14.96584 -14.72752 -14.25061 -13.77960 -13.39939 -13.29594 -12.80157 -12.75899 -12.63739 -12.13969 -12.01935 -11.82223 -11.75183 -11.68934 -11.49827 -11.32775 -10.75611 -10.70522 -10.20038 -9.21016 -8.28738 -6.33398 -0.41076 0.01585 0.49063 1.38778 1.40723 1.52357 1.89494 2.29959 2.37640 2.67820 3.07265 3.09324 3.29630 3.84874 3.88282 4.08259 4.20213 4.36540 4.39506 4.50418 4.73736 4.81583 4.89610 5.01954 5.04323 5.41765 5.45024 5.55662 5.63269 5.75005 6.19328 6.27420 6.35217 6.75207 7.02945 7.31678 8.87880 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.037092 B = 0.003509 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.702549 B = 7978.473643 C = 8643.254124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.320 6.320 3 C -0.067 4.067 4 C 0.223 3.777 5 Cl -0.003 7.003 6 N -0.563 5.563 7 C 0.357 3.643 8 N -0.577 5.577 9 C 0.432 3.568 10 N -0.688 5.688 11 C 0.139 3.861 12 C -0.104 4.104 13 C -0.008 4.008 14 C -0.533 4.533 15 H 0.033 0.967 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.950 3.050 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.243 1.243 22 H 0.122 0.878 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.243 0.757 26 H 0.420 0.580 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 4.209 -24.055 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.234 6.234 3 C -0.123 4.123 4 C 0.054 3.946 5 Cl 0.026 6.974 6 N -0.287 5.287 7 C 0.069 3.931 8 N -0.304 5.304 9 C 0.185 3.815 10 N -0.319 5.319 11 C 0.016 3.984 12 C -0.142 4.142 13 C -0.046 4.046 14 C -0.571 4.571 15 H 0.052 0.948 16 C -0.194 4.194 17 N -0.594 5.594 18 Si 0.774 3.226 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.166 1.166 22 H 0.141 0.859 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.259 0.741 26 H 0.259 0.741 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.405 4.836 -23.814 24.303 hybrid contribution -0.632 -0.748 0.556 1.126 sum -0.227 4.088 -23.258 23.616 Atomic orbital electron populations 1.23364 0.77590 1.05367 1.01154 1.86189 1.21407 1.22024 1.93770 1.19216 1.10021 0.92406 0.90682 1.22410 0.93926 0.90548 0.87746 1.98416 1.91319 1.79614 1.28073 1.67926 1.18642 1.09905 1.32189 1.25428 0.89389 0.98701 0.79539 1.68130 1.19773 1.10388 1.32111 1.19126 0.88080 0.88115 0.86223 1.44798 1.61945 1.23257 1.01943 1.21410 1.00583 0.95733 0.80720 1.21509 1.01026 0.98731 0.92974 1.19426 0.96854 0.95918 0.92417 1.21487 1.38497 1.05724 0.91426 0.94837 1.26039 0.96045 1.01513 0.95827 1.70069 1.49440 1.40506 0.99340 0.85652 0.79559 0.79207 0.78217 1.19131 1.21308 1.16586 0.85939 0.93326 0.92880 0.74089 0.74087 0.91492 0.91184 0.92066 0.92305 0.95772 0.95772 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.13 113.37 1.26 1.57 16 2 O -0.32 -6.97 9.33 -94.13 -0.88 -7.85 16 3 C -0.07 -1.61 5.80 22.79 0.13 -1.48 16 4 C 0.22 5.26 7.34 84.68 0.62 5.88 16 5 Cl 0.00 -0.06 28.76 -2.72 -0.08 -0.14 16 6 N -0.56 -12.91 10.43 -190.81 -1.99 -14.90 16 7 C 0.36 7.23 12.28 180.90 2.22 9.45 16 8 N -0.58 -14.28 9.70 -197.22 -1.91 -16.19 16 9 C 0.43 11.01 7.53 133.17 1.00 12.01 16 10 N -0.69 -17.33 5.70 -344.16 -1.96 -19.29 16 11 C 0.14 3.93 5.73 86.38 0.50 4.43 16 12 C -0.10 -3.61 5.27 30.59 0.16 -3.44 16 13 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 14 C -0.53 -29.77 9.66 25.60 0.25 -29.53 16 15 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 16 C 0.00 0.14 5.47 84.65 0.46 0.60 16 17 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 18 Si 0.95 43.10 27.47 68.60 1.88 44.99 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 21 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 22 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.24 2.78 8.06 -2.91 -0.02 2.76 16 26 H 0.42 9.63 7.92 -92.71 -0.73 8.89 16 27 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 32 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 33 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -66.70 304.40 2.43 -64.27 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.34 Total: 8.66 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 6.73 Total: -0.74 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -5.56 Total: -109.19 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.88 Total: -7.85 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.99 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -0.08 Total: -0.14 kcal Total: -66.70 2.43 -64.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427356.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.837 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds