Wall clock time and date at job start Mon Mar 30 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36005 * 116.99918 * 2 1 4 4 C 1.39043 * 120.77831 * 179.97438 * 3 2 1 5 5 N 1.32279 * 119.12526 * 180.02562 * 4 3 2 6 6 C 1.32403 * 120.80277 * 0.02562 * 5 4 3 7 7 N 1.38846 * 119.15032 * 179.97438 * 6 5 4 8 8 C 1.38436 * 120.00112 * 174.93427 * 7 6 5 9 9 C 1.38952 * 119.99942 * 301.43917 * 8 7 6 10 10 H 1.08003 * 119.99603 * 152.04585 * 9 8 7 11 11 C 1.40850 * 120.00189 * 332.04432 * 9 8 7 12 12 N 1.30330 * 120.00168 * 2.84393 * 11 9 8 13 13 Si 1.86801 * 120.00008 * 182.84430 * 11 9 8 14 14 H 1.48509 * 109.46985 * 90.00043 * 13 11 9 15 15 H 1.48498 * 109.47054 * 209.99797 * 13 11 9 16 16 H 1.48499 * 109.47390 * 330.00013 * 13 11 9 17 17 C 1.41137 * 119.99993 * 121.44129 * 8 7 6 18 18 C 1.43194 * 119.99844 * 174.77474 * 17 8 7 19 19 N 9.24661 * 93.41963 * 3.85380 * 2 1 3 20 20 C 1.43195 * 119.99667 * 354.48963 * 17 8 7 21 21 N 7.84758 * 113.52570 * 25.04571 * 2 1 3 22 22 N 1.32421 * 121.70473 * 0.27878 * 6 5 4 23 23 C 1.32278 * 120.79415 * 359.43581 * 22 6 5 24 24 H 1.08996 * 109.46913 * 60.00443 * 1 2 3 25 25 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47491 * 299.99989 * 1 2 3 27 27 H 1.07997 * 120.43286 * 0.02562 * 4 3 2 28 28 H 0.96997 * 120.00269 * 354.93764 * 7 6 5 29 29 H 0.96991 * 120.00193 * 185.00659 * 12 11 9 30 30 H 1.08001 * 120.43325 * 180.27762 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4339 1.3035 0.0005 5 7 4.0001 2.4989 0.0010 6 6 3.2626 3.5985 0.0015 7 7 3.8929 4.8357 0.0026 8 6 3.1432 5.9946 -0.1027 9 6 2.3227 6.1934 -1.2064 10 1 1.4377 6.8061 -1.1179 11 6 2.6452 5.5960 -2.4405 12 7 3.6822 4.8121 -2.5337 13 14 1.5867 5.9273 -3.9435 14 1 2.1092 7.1156 -4.6648 15 1 1.6220 4.7468 -4.8438 16 1 0.1874 6.1828 -3.5170 17 6 3.2121 6.9743 0.9109 18 6 2.5253 8.2204 0.7502 19 7 1.9806 9.2093 0.6204 20 6 3.9640 6.7196 2.1027 21 7 4.5615 6.5187 3.0461 22 7 1.9393 3.5489 0.0070 23 6 1.3051 2.3881 0.0011 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0411 0.4104 0.0005 28 1 4.8586 4.8879 0.0771 29 1 3.9470 4.4587 -3.3973 30 1 0.2256 2.3545 0.0011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169074931.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:20 Heat of formation + Delta-G solvation = 83.500335 kcal Electronic energy + Delta-G solvation = -19629.186766 eV Core-core repulsion = 16425.876114 eV Total energy + Delta-G solvation = -3203.310652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73073 -38.45058 -37.05031 -35.19283 -34.69554 -33.51204 -33.19755 -31.04277 -28.93668 -27.18572 -27.06928 -24.16951 -22.89406 -21.33606 -19.14404 -17.98850 -17.82917 -17.42327 -16.54487 -16.25787 -15.74215 -15.23349 -14.37560 -14.08731 -14.03685 -13.61838 -13.23330 -12.79717 -12.55764 -12.26184 -12.05328 -11.87116 -11.67408 -11.66222 -11.53280 -11.40148 -11.01763 -10.93654 -10.85080 -10.62263 -10.39838 -10.02801 -9.65564 -8.57398 -8.10645 -7.69138 -6.91821 -5.38673 1.53171 1.59485 2.27377 2.71410 2.77918 2.87639 3.30698 3.42658 3.63624 3.90854 4.09031 4.27653 4.33156 4.46941 4.66005 4.77419 4.99590 5.14357 5.20087 5.21896 5.40716 5.49431 5.64339 6.02628 6.24542 6.28309 6.44105 7.10839 7.19428 7.25945 7.54409 7.69240 7.82166 8.12844 8.31000 8.93790 9.01843 9.16409 9.28090 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.007780 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.064875 B = 3598.126083 C = 4684.039793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C -0.064 4.064 4 C 0.168 3.832 5 N -0.534 5.534 6 C 0.582 3.418 7 N -0.614 5.614 8 C 0.395 3.605 9 C -0.358 4.358 10 H 0.111 0.889 11 C 0.072 3.928 12 N -0.734 5.734 13 Si 0.928 3.072 14 H -0.257 1.257 15 H -0.270 1.270 16 H -0.249 1.249 17 C -0.306 4.306 18 C 0.328 3.672 19 N -0.533 5.533 20 C 0.310 3.690 21 N -0.534 5.534 22 N -0.507 5.507 23 C 0.115 3.885 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.166 0.834 28 H 0.412 0.588 29 H 0.299 0.701 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -11.804 -5.095 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C -0.116 4.116 4 C -0.002 4.002 5 N -0.256 5.256 6 C 0.227 3.773 7 N -0.243 5.243 8 C 0.291 3.709 9 C -0.386 4.386 10 H 0.128 0.872 11 C -0.158 4.158 12 N -0.353 5.353 13 Si 0.750 3.250 14 H -0.181 1.181 15 H -0.195 1.195 16 H -0.172 1.172 17 C -0.325 4.325 18 C 0.020 3.980 19 N -0.215 5.215 20 C 0.002 3.998 21 N -0.216 5.216 22 N -0.229 5.229 23 C -0.056 4.056 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.183 0.817 28 H 0.251 0.749 29 H 0.111 0.889 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.037 -9.984 -3.966 11.476 hybrid contribution -0.636 -1.025 -1.144 1.663 sum -4.673 -11.009 -5.110 13.006 Atomic orbital electron populations 1.22985 0.79081 1.03573 1.01207 1.86016 1.20663 1.25621 1.90358 1.20431 0.94846 0.86311 1.10014 1.22192 0.89207 0.95116 0.93670 1.67866 1.39756 0.97442 1.20496 1.18765 0.84603 0.85602 0.88335 1.40919 1.08787 1.00138 1.74442 1.16623 0.84694 0.81163 0.88434 1.20161 1.07437 1.19306 0.91695 0.87163 1.26552 0.95286 0.91396 1.02554 1.69527 1.19432 1.17303 1.29040 0.85905 0.81233 0.79507 0.78401 1.18149 1.19508 1.17172 1.12934 1.27151 0.95360 0.97057 1.24625 0.90700 0.91000 0.91670 1.81065 1.16745 1.13096 1.10632 1.25162 0.91026 0.92057 0.91532 1.81002 1.17234 1.10412 1.12931 1.67943 1.09187 1.27768 1.17968 1.23064 1.00356 0.86518 0.95615 0.92914 0.88541 0.92861 0.81703 0.74924 0.88931 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.84 101.05 0.99 1.23 16 2 O -0.31 -4.03 10.52 -19.76 -0.21 -4.24 16 3 C -0.06 -0.96 6.73 -38.99 -0.26 -1.22 16 4 C 0.17 2.63 11.26 -17.06 -0.19 2.44 16 5 N -0.53 -9.92 10.45 -13.74 -0.14 -10.06 16 6 C 0.58 11.67 6.87 -322.37 -2.22 9.45 16 7 N -0.61 -12.63 3.34 -11.35 -0.04 -12.67 16 8 C 0.40 8.52 5.45 -83.52 -0.46 8.06 16 9 C -0.36 -7.56 7.46 -38.33 -0.29 -7.85 16 10 H 0.11 2.36 7.29 -52.48 -0.38 1.98 16 11 C 0.07 1.40 5.30 -17.20 -0.09 1.31 16 12 N -0.73 -14.52 10.88 55.60 0.61 -13.91 16 13 Si 0.93 15.39 29.57 -169.99 -5.03 10.37 16 14 H -0.26 -4.29 7.11 56.52 0.40 -3.88 16 15 H -0.27 -4.41 7.11 56.52 0.40 -4.01 16 16 H -0.25 -4.17 7.11 56.52 0.40 -3.77 16 17 C -0.31 -6.86 5.88 -104.95 -0.62 -7.48 16 18 C 0.33 7.61 14.05 -22.46 -0.32 7.29 16 19 N -0.53 -12.77 18.54 41.85 0.78 -12.00 16 20 C 0.31 7.16 14.82 -22.52 -0.33 6.83 16 21 N -0.53 -12.82 18.53 41.78 0.77 -12.04 16 22 N -0.51 -9.88 8.93 -13.74 -0.12 -10.00 16 23 C 0.11 1.83 10.30 -17.06 -0.18 1.65 16 24 H 0.05 0.43 7.71 -51.93 -0.40 0.03 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.43 7.71 -51.93 -0.40 0.03 16 27 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.41 8.23 8.94 -40.82 -0.36 7.87 16 29 H 0.30 5.46 8.29 -40.82 -0.34 5.12 16 30 H 0.16 2.01 6.46 -52.49 -0.34 1.67 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -26.76 292.66 -4.79 -31.55 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -1.87 Total: 6.86 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: -3.95 Total: 21.73 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: 1.85 Total: -70.68 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.21 Total: -4.24 kcal Atomic # 14 Polarization: 15.39 SS G_CDS: -5.03 Total: 10.37 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.76 -4.79 -31.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169074931.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.051 kcal (2) G-P(sol) polarization free energy of solvation -26.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds