Wall clock time and date at job start Mon Mar 30 2020 01:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39964 * 119.88650 * 2 1 4 4 C 1.31096 * 120.72384 * 180.27706 * 3 2 1 5 5 N 1.39505 * 119.76457 * 179.74088 * 4 3 2 6 6 C 1.38325 * 120.00403 * 358.23534 * 5 4 3 7 7 C 1.38994 * 119.99762 * 300.28302 * 6 5 4 8 8 H 1.07995 * 119.99768 * 152.98203 * 7 6 5 9 9 C 1.40843 * 120.00040 * 332.98032 * 7 6 5 10 10 N 1.30327 * 120.00014 * 1.24154 * 9 7 6 11 11 Si 1.86795 * 119.99704 * 181.24086 * 9 7 6 12 12 H 1.48503 * 109.47451 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47158 * 120.00003 * 11 9 7 14 14 H 1.48495 * 109.47233 * 239.99847 * 11 9 7 15 15 C 1.41156 * 119.99875 * 120.28182 * 6 5 4 16 16 C 1.43206 * 119.99782 * 174.50341 * 15 6 5 17 17 N 6.97933 * 97.83334 * 6.87459 * 2 1 3 18 18 C 1.43200 * 120.00295 * 354.22773 * 15 6 5 19 19 N 6.14363 * 124.87305 * 37.48184 * 2 1 3 20 20 C 1.40878 * 120.46306 * 359.47226 * 4 3 2 21 21 C 1.35965 * 119.73091 * 0.27015 * 20 4 3 22 22 C 1.34815 * 119.88707 * 179.75180 * 2 1 3 23 23 O 1.22093 * 120.22261 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47196 * 274.75011 * 1 2 3 25 25 H 1.08995 * 109.47721 * 34.75593 * 1 2 3 26 26 H 1.09006 * 109.47066 * 154.75237 * 1 2 3 27 27 H 0.96999 * 119.99813 * 178.23975 * 5 4 3 28 28 H 0.97005 * 120.00106 * 185.01143 * 10 9 7 29 29 H 1.08004 * 120.13278 * 180.24807 * 20 4 3 30 30 H 1.07999 * 120.34478 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1624 1.2135 0.0000 4 6 3.4732 1.2327 -0.0054 5 7 4.1480 2.4537 -0.0108 6 6 3.4345 3.6381 -0.0473 7 6 2.5799 3.9022 -1.1112 8 1 1.7283 4.5514 -0.9714 9 6 2.8246 3.3230 -2.3715 10 7 3.8384 2.5203 -2.5340 11 14 1.6960 3.7053 -3.8100 12 1 0.6280 4.6374 -3.3672 13 1 2.4813 4.3358 -4.9014 14 1 1.0818 2.4474 -4.3052 15 6 3.5742 4.5786 0.9960 16 6 2.9285 5.8534 0.9021 17 7 2.4162 6.8645 0.8276 18 6 4.3569 4.2559 2.1510 19 7 4.9777 3.9998 3.0671 20 6 4.2051 0.0290 -0.0002 21 6 3.5467 -1.1606 0.0050 22 6 2.1368 -1.1688 0.0051 23 8 1.5283 -2.2274 0.0092 24 1 -0.3633 0.0851 1.0241 25 1 -0.3634 0.8442 -0.5858 26 1 -0.3633 -0.9295 -0.4384 27 1 5.1175 2.4721 0.0110 28 1 4.0501 2.1789 -3.4170 29 1 5.2850 0.0510 -0.0007 30 1 4.0978 -2.0893 0.0094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079590.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:47 Heat of formation + Delta-G solvation = 82.688919 kcal Electronic energy + Delta-G solvation = -19848.806497 eV Core-core repulsion = 16645.460659 eV Total energy + Delta-G solvation = -3203.345838 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.76029 -39.59449 -37.82916 -36.78431 -36.48088 -35.52434 -34.49251 -32.35144 -31.04066 -28.71940 -28.15835 -25.25249 -23.79595 -22.85141 -20.77802 -19.25953 -19.06643 -18.18117 -17.76102 -17.51970 -16.87919 -16.61586 -16.17133 -15.25845 -14.69375 -14.44865 -14.34324 -14.21582 -14.12576 -13.89413 -13.84655 -13.41378 -13.37797 -13.30991 -13.25745 -12.97859 -12.67307 -12.58259 -12.04371 -11.97457 -11.49119 -11.15989 -10.67886 -10.53835 -9.65198 -9.19572 -8.44459 -7.04867 -0.35190 0.55466 1.23112 1.31083 1.39131 1.50828 1.56332 2.07338 2.12319 2.29186 2.35166 2.58090 2.67273 2.78275 3.42944 3.49975 3.77708 3.92033 4.04312 4.49954 4.53594 4.59257 4.71290 4.77696 4.79570 4.90045 5.08606 5.23739 5.49365 5.74861 6.09883 6.25551 6.61155 6.71121 6.90674 7.23941 7.36225 7.43706 7.78004 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.008633 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.591115 B = 3242.626082 C = 4296.279153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.405 5.405 3 N -0.311 5.311 4 C 0.382 3.618 5 N -0.623 5.623 6 C 0.386 3.614 7 C -0.358 4.358 8 H 0.097 0.903 9 C 0.056 3.944 10 N -0.728 5.728 11 Si 0.971 3.029 12 H -0.259 1.259 13 H -0.255 1.255 14 H -0.265 1.265 15 C -0.318 4.318 16 C 0.330 3.670 17 N -0.560 5.560 18 C 0.319 3.681 19 N -0.556 5.556 20 C -0.072 4.072 21 C -0.162 4.162 22 C 0.473 3.527 23 O -0.601 6.601 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.421 0.579 28 H 0.310 0.690 29 H 0.185 0.815 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 -7.868 -6.605 10.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.222 5.222 3 N -0.139 5.139 4 C 0.115 3.885 5 N -0.257 5.257 6 C 0.281 3.719 7 C -0.386 4.386 8 H 0.115 0.885 9 C -0.174 4.174 10 N -0.347 5.347 11 Si 0.792 3.208 12 H -0.183 1.183 13 H -0.179 1.179 14 H -0.189 1.189 15 C -0.337 4.337 16 C 0.023 3.977 17 N -0.244 5.244 18 C 0.013 3.987 19 N -0.239 5.239 20 C -0.097 4.097 21 C -0.190 4.190 22 C 0.269 3.731 23 O -0.486 6.486 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.261 0.739 28 H 0.123 0.877 29 H 0.202 0.798 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.288 -6.924 -5.434 8.807 hybrid contribution 0.483 -0.507 -0.849 1.101 sum 0.195 -7.431 -6.284 9.733 Atomic orbital electron populations 1.21833 0.74286 1.04384 1.03757 1.49223 1.08681 1.01974 1.62309 1.75548 1.07770 1.04252 1.26285 1.18964 0.89130 0.87123 0.93311 1.41000 1.07897 0.99804 1.77011 1.16591 0.85791 0.81865 0.87683 1.20314 1.07860 1.17751 0.92684 0.88487 1.26837 0.96339 0.91545 1.02682 1.69412 1.20846 1.16347 1.28112 0.85211 0.79145 0.79602 0.76842 1.18282 1.17907 1.18918 1.13013 1.27633 0.94253 0.98840 1.24912 0.90451 0.91207 0.91102 1.81042 1.17769 1.13972 1.11572 1.25253 0.90634 0.91556 0.91277 1.81067 1.18499 1.11206 1.13152 1.22086 1.03872 0.89624 0.94136 1.22658 0.92398 1.00979 1.02974 1.18104 0.90846 0.83807 0.80318 1.90897 1.71338 1.30137 1.56191 0.90622 0.88954 0.89055 0.73869 0.87749 0.79777 0.79602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.73 10.81 127.77 1.38 4.11 16 2 N -0.40 -13.60 3.91 -493.91 -1.93 -15.53 16 3 N -0.31 -11.01 10.09 -54.63 -0.55 -11.56 16 4 C 0.38 12.12 6.14 133.71 0.82 12.94 16 5 N -0.62 -20.18 3.30 -183.92 -0.61 -20.79 16 6 C 0.39 14.59 5.48 39.02 0.21 14.80 16 7 C -0.36 -13.68 7.49 23.09 0.17 -13.50 16 8 H 0.10 3.93 7.27 -2.91 -0.02 3.91 16 9 C 0.06 1.92 5.28 85.55 0.45 2.37 16 10 N -0.73 -23.57 10.93 21.98 0.24 -23.33 16 11 Si 0.97 28.44 29.57 68.60 2.03 30.47 16 12 H -0.26 -8.09 7.11 99.48 0.71 -7.38 16 13 H -0.26 -7.14 7.11 99.48 0.71 -6.43 16 14 H -0.26 -7.75 7.11 99.48 0.71 -7.04 16 15 C -0.32 -13.06 5.88 -20.07 -0.12 -13.18 16 16 C 0.33 14.62 14.04 88.33 1.24 15.86 16 17 N -0.56 -26.11 18.54 19.00 0.35 -25.76 16 18 C 0.32 13.43 14.82 88.33 1.31 14.74 16 19 N -0.56 -24.40 18.54 19.00 0.35 -24.05 16 20 C -0.07 -1.76 9.90 22.39 0.22 -1.54 16 21 C -0.16 -4.21 10.00 22.42 0.22 -3.99 16 22 C 0.47 15.94 7.50 84.91 0.64 16.57 16 23 O -0.60 -23.24 16.64 -5.62 -0.09 -23.33 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.09 2.43 7.29 -2.38 -0.02 2.42 16 27 H 0.42 11.85 8.83 -92.71 -0.82 11.03 16 28 H 0.31 8.99 8.29 -92.70 -0.77 8.22 16 29 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -55.93 294.27 6.76 -49.17 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.41 Total: 15.51 kcal Atomic # 6 Polarization: 42.63 SS G_CDS: 6.56 Total: 49.19 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -2.14 Total: -121.02 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.09 Total: -23.33 kcal Atomic # 14 Polarization: 28.44 SS G_CDS: 2.03 Total: 30.47 kcal Total: -55.93 6.76 -49.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079590.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.864 kcal (2) G-P(sol) polarization free energy of solvation -55.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds