Wall clock time and date at job start Mon Mar 30 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43205 * 119.99921 * 93.40470 * 3 2 1 5 5 N 3.51040 * 140.68678 * 93.40475 * 2 1 3 6 6 C 1.41164 * 120.00146 * 273.40471 * 3 2 1 7 7 C 1.38993 * 119.99689 * 5.41775 * 6 3 2 8 8 H 1.07998 * 120.00536 * 21.66083 * 7 6 3 9 9 C 1.40833 * 119.99594 * 201.66071 * 7 6 3 10 10 N 1.30332 * 120.00251 * 10.81258 * 9 7 6 11 11 Si 1.86811 * 119.99840 * 190.81148 * 9 7 6 12 12 H 1.48501 * 109.46942 * 60.00182 * 11 9 7 13 13 H 1.48504 * 109.46876 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47058 * 300.00102 * 11 9 7 15 15 N 1.38294 * 119.99728 * 185.41722 * 6 3 2 16 16 C 1.39736 * 119.99810 * 241.18395 * 15 6 3 17 17 C 1.38927 * 120.07325 * 187.61250 * 16 15 6 18 18 C 1.38099 * 119.92291 * 180.02562 * 17 16 15 19 19 C 1.38290 * 120.07467 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.92388 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.47271 * 90.00092 * 20 19 18 22 22 C 1.38296 * 120.15166 * 0.26991 * 19 18 17 23 23 C 1.38099 * 120.07342 * 359.45247 * 22 19 18 24 24 H 0.97001 * 120.00467 * 184.98449 * 10 9 7 25 25 H 0.97002 * 120.00021 * 61.19143 * 15 6 3 26 26 H 1.07998 * 120.03663 * 0.02562 * 17 16 15 27 27 H 1.07992 * 119.96258 * 179.97438 * 18 17 16 28 28 H 1.09004 * 109.47109 * 209.99506 * 20 19 18 29 29 H 1.09002 * 109.47091 * 329.99645 * 20 19 18 30 30 H 1.08003 * 119.96000 * 179.70571 * 22 19 18 31 31 H 1.07999 * 120.03517 * 180.24795 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2839 0.0746 -1.2380 5 7 3.8519 0.1321 -2.2201 6 6 3.2738 -0.0716 1.2203 7 6 2.5836 -0.2567 2.4125 8 1 1.5927 -0.6862 2.4018 9 6 3.1764 0.1157 3.6344 10 7 4.2721 0.8214 3.6389 11 14 2.3921 -0.4017 5.2491 12 1 2.3310 -1.8839 5.3171 13 1 3.2039 0.1132 6.3810 14 1 1.0179 0.1548 5.3326 15 7 4.6521 0.0417 1.2296 16 6 5.4367 -1.0138 1.7016 17 6 6.8066 -0.8461 1.8606 18 6 7.5792 -1.8915 2.3268 19 6 6.9907 -3.1044 2.6348 20 6 7.8371 -4.2432 3.1428 21 9 7.9052 -4.1869 4.5390 22 6 5.6283 -3.2768 2.4720 23 6 4.8489 -2.2338 2.0117 24 1 4.7200 1.0167 4.4769 25 1 5.0741 0.8539 0.9086 26 1 7.2668 0.1008 1.6198 27 1 8.6442 -1.7619 2.4502 28 1 7.3920 -5.1905 2.8387 29 1 8.8413 -4.1633 2.7265 30 1 5.1726 -4.2269 2.7090 31 1 3.7844 -2.3678 1.8885 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:07 Heat of formation + Delta-G solvation = 24.437617 kcal Electronic energy + Delta-G solvation = -19394.835817 eV Core-core repulsion = 16169.044052 eV Total energy + Delta-G solvation = -3225.791765 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.39261 -39.26407 -37.04693 -35.27594 -34.74580 -33.68364 -31.58406 -30.41662 -29.28638 -27.17024 -25.23661 -22.59630 -21.62898 -20.61717 -18.91871 -17.35999 -16.99565 -16.29341 -15.94856 -15.71720 -15.52515 -15.20687 -14.01614 -13.86094 -13.46395 -13.02524 -12.81052 -12.67729 -12.61176 -12.48971 -12.26976 -11.81955 -11.66858 -11.61491 -11.50602 -11.09989 -11.02577 -10.92192 -10.73031 -10.64057 -10.45364 -10.06651 -9.81160 -8.45823 -8.24410 -7.73317 -6.69582 -5.49349 1.80864 1.93209 2.29044 2.70825 2.74855 2.88743 3.39426 3.81711 3.96782 4.03458 4.20167 4.34952 4.43002 4.94598 4.96081 5.06637 5.13537 5.41157 5.45809 5.56151 5.86847 5.88758 6.09880 6.19290 6.22708 6.32612 6.48707 6.77296 6.91266 7.00312 7.04218 7.20218 7.43821 7.66740 7.77832 8.30686 8.49912 8.94014 9.10256 9.18876 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.007338 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.103295 B = 3814.690703 C = 4950.455220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C 0.325 3.675 3 C -0.312 4.312 4 C 0.311 3.689 5 N -0.534 5.534 6 C 0.382 3.618 7 C -0.379 4.379 8 H 0.109 0.891 9 C 0.075 3.925 10 N -0.715 5.715 11 Si 0.919 3.081 12 H -0.250 1.250 13 H -0.269 1.269 14 H -0.253 1.253 15 N -0.660 5.660 16 C 0.266 3.734 17 C -0.196 4.196 18 C -0.057 4.057 19 C -0.215 4.215 20 C 0.118 3.882 21 F -0.221 7.221 22 C -0.058 4.058 23 C -0.184 4.184 24 H 0.303 0.697 25 H 0.403 0.597 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -5.016 6.898 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.215 5.215 2 C 0.017 3.983 3 C -0.330 4.330 4 C 0.003 3.997 5 N -0.217 5.217 6 C 0.278 3.722 7 C -0.406 4.406 8 H 0.127 0.873 9 C -0.157 4.157 10 N -0.333 5.333 11 Si 0.741 3.259 12 H -0.173 1.173 13 H -0.193 1.193 14 H -0.177 1.177 15 N -0.280 5.280 16 C 0.161 3.839 17 C -0.218 4.218 18 C -0.076 4.076 19 C -0.218 4.218 20 C 0.063 3.937 21 F -0.202 7.202 22 C -0.077 4.077 23 C -0.206 4.206 24 H 0.115 0.885 25 H 0.239 0.761 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.133 0.867 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.292 -4.746 5.537 10.313 hybrid contribution 0.210 0.301 1.132 1.190 sum 7.501 -4.445 6.669 10.977 Atomic orbital electron populations 1.81059 1.12247 1.19370 1.08842 1.24711 0.91346 0.90295 0.91989 1.13034 0.83039 1.50617 0.86314 1.25192 0.92381 0.90289 0.91797 1.81064 1.09893 1.19647 1.11047 1.16707 0.80662 0.84883 0.89982 1.20279 1.02393 1.27786 0.90145 0.87300 1.26415 0.94524 0.91864 1.02883 1.69441 1.12592 1.18686 1.32568 0.86061 0.80584 0.81358 0.77923 1.17340 1.19275 1.17709 1.41592 1.03662 1.16486 1.66229 1.17641 0.89763 0.87204 0.89279 1.20466 0.92429 0.99724 1.09216 1.20550 0.98626 0.91981 0.96454 1.19734 0.94838 0.96412 1.10801 1.20626 0.99972 0.97735 0.75380 1.92777 1.97782 1.97802 1.31862 1.20683 0.92457 0.98113 0.96408 1.20899 1.00974 0.92148 1.06601 0.88483 0.76090 0.86503 0.86883 0.90800 0.90916 0.86679 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.54 18.54 41.84 0.78 -11.76 16 2 C 0.32 7.32 13.97 -22.47 -0.31 7.01 16 3 C -0.31 -6.67 5.88 -104.93 -0.62 -7.29 16 4 C 0.31 6.91 14.82 -22.47 -0.33 6.57 16 5 N -0.53 -12.40 18.54 41.84 0.78 -11.62 16 6 C 0.38 7.65 4.89 -83.56 -0.41 7.24 16 7 C -0.38 -7.51 6.93 -38.32 -0.27 -7.77 16 8 H 0.11 2.19 7.15 -52.49 -0.38 1.82 16 9 C 0.08 1.40 4.90 -17.21 -0.08 1.31 16 10 N -0.71 -13.30 11.21 55.59 0.62 -12.68 16 11 Si 0.92 14.86 29.58 -169.99 -5.03 9.83 16 12 H -0.25 -4.07 7.11 56.52 0.40 -3.67 16 13 H -0.27 -4.27 7.11 56.52 0.40 -3.87 16 14 H -0.25 -4.19 7.11 56.52 0.40 -3.79 16 15 N -0.66 -12.22 3.28 -8.18 -0.03 -12.24 16 16 C 0.27 4.71 5.31 -83.75 -0.44 4.27 16 17 C -0.20 -3.13 9.90 -39.38 -0.39 -3.52 16 18 C -0.06 -0.84 9.69 -39.61 -0.38 -1.22 16 19 C -0.22 -3.14 5.60 -104.58 -0.59 -3.73 16 20 C 0.12 1.40 7.67 36.01 0.28 1.67 16 21 F -0.22 -3.19 17.34 2.25 0.04 -3.15 16 22 C -0.06 -0.89 9.69 -39.61 -0.38 -1.28 16 23 C -0.18 -3.23 8.72 -39.38 -0.34 -3.57 16 24 H 0.30 5.24 8.29 -40.82 -0.34 4.90 16 25 H 0.40 7.18 8.84 -40.82 -0.36 6.82 16 26 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.13 2.44 6.31 -52.49 -0.33 2.11 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -24.24 298.71 -4.93 -29.17 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -2.31 Total: 8.27 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -4.28 Total: -0.31 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 2.15 Total: -48.31 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 14.86 SS G_CDS: -5.03 Total: 9.83 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -24.24 -4.93 -29.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.609 kcal (2) G-P(sol) polarization free energy of solvation -24.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds