Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35459 * 116.99734 * 2 1 4 4 N 1.32328 * 119.15341 * 0.02562 * 3 2 1 5 5 C 1.32496 * 120.94484 * 180.02562 * 4 3 2 6 6 C 1.38165 * 119.26011 * 359.97438 * 5 4 3 7 7 C 1.39582 * 118.45399 * 0.25858 * 6 5 4 8 8 N 1.38751 * 120.49251 * 179.74986 * 7 6 5 9 9 C 1.38441 * 119.99956 * 353.95096 * 8 7 6 10 10 C 1.38937 * 120.00175 * 299.84826 * 9 8 7 11 11 H 1.08001 * 120.00203 * 152.61073 * 10 9 8 12 12 C 1.40861 * 119.99967 * 332.60139 * 10 9 8 13 13 N 1.30323 * 120.00143 * 167.91079 * 12 10 9 14 14 Si 1.86803 * 119.99966 * 347.91244 * 12 10 9 15 15 H 1.48502 * 109.46967 * 88.15615 * 14 12 10 16 16 H 1.48497 * 109.46944 * 208.15291 * 14 12 10 17 17 H 1.48490 * 109.47009 * 328.15226 * 14 12 10 18 18 C 1.41132 * 119.99608 * 119.84636 * 9 8 7 19 19 C 1.43199 * 119.99874 * 175.32535 * 18 9 8 20 20 N 9.30156 * 137.12846 * 5.13765 * 2 1 3 21 21 C 1.43197 * 120.00312 * 355.32428 * 18 9 8 22 22 N 7.04745 * 144.17286 * 47.63153 * 2 1 3 23 23 N 1.32256 * 119.15662 * 180.02562 * 3 2 1 24 24 H 1.08994 * 109.47335 * 60.00127 * 1 2 3 25 25 H 1.09006 * 109.47026 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47334 * 299.99286 * 1 2 3 27 27 H 1.08001 * 120.37180 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.76944 * 179.97438 * 6 5 4 29 29 H 0.96997 * 119.99212 * 173.95661 * 8 7 6 30 30 H 0.96994 * 120.00629 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3068 2.3060 0.0005 5 6 1.8711 3.5048 0.0000 6 6 3.2493 3.6025 -0.0005 7 6 3.9994 2.4253 -0.0060 8 7 5.3861 2.4742 -0.0120 9 6 6.0353 3.6903 -0.1388 10 6 5.8316 4.4720 -1.2692 11 1 5.9430 5.5447 -1.2112 12 6 5.4799 3.8655 -2.4910 13 7 5.0606 4.5970 -3.4847 14 14 5.6145 2.0127 -2.6867 15 1 4.3479 1.3750 -2.2460 16 1 5.8648 1.6825 -4.1128 17 1 6.7378 1.5076 -1.8572 18 6 6.9042 4.1359 0.8802 19 6 7.6524 5.3443 0.7053 20 7 8.2459 6.3030 0.5667 21 6 7.0375 3.3798 2.0889 22 7 7.1430 2.7799 3.0478 23 7 3.3655 1.2568 -0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.2606 4.3957 0.0009 28 1 3.7348 4.5671 -0.0013 29 1 5.9004 1.6562 0.0726 30 1 4.8181 4.1794 -4.3259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169081140.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = 68.926795 kcal Electronic energy + Delta-G solvation = -19736.975729 eV Core-core repulsion = 16533.033120 eV Total energy + Delta-G solvation = -3203.942608 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.25632 -40.07684 -38.71568 -37.13327 -36.61438 -35.77729 -34.45785 -32.50158 -30.92074 -29.11879 -28.33975 -25.13222 -24.73012 -22.83975 -21.04449 -19.83616 -19.46531 -18.84147 -18.03936 -17.51793 -17.29606 -16.91047 -16.14565 -15.45303 -15.32491 -14.94403 -14.67875 -14.63622 -14.47065 -14.32748 -13.70574 -13.56125 -13.45834 -13.25116 -12.95039 -12.86885 -12.81433 -12.48155 -12.21816 -12.02673 -11.94485 -11.39636 -10.66953 -10.27174 -10.01123 -9.45851 -9.08890 -7.24493 0.02296 0.21012 0.45892 1.22033 1.29138 1.33744 1.46421 1.90772 1.99357 2.16422 2.19518 2.46676 2.54265 2.87919 3.24324 3.30436 3.62234 3.76527 4.02387 4.35821 4.45165 4.46885 4.52413 4.65254 4.70863 4.77594 5.03092 5.34259 5.40347 5.67163 5.76639 6.01212 6.17689 6.26961 6.50959 7.08385 7.19315 7.28004 7.52159 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.007541 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.607146 B = 3712.226662 C = 4409.727853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.312 6.312 3 C 0.515 3.485 4 N -0.600 5.600 5 C 0.206 3.794 6 C -0.297 4.297 7 C 0.463 3.537 8 N -0.661 5.661 9 C 0.347 3.653 10 C -0.343 4.343 11 H 0.114 0.886 12 C 0.064 3.936 13 N -0.731 5.731 14 Si 0.944 3.056 15 H -0.254 1.254 16 H -0.278 1.278 17 H -0.246 1.246 18 C -0.291 4.291 19 C 0.330 3.670 20 N -0.544 5.544 21 C 0.314 3.686 22 N -0.546 5.546 23 N -0.601 5.601 24 H 0.064 0.936 25 H 0.130 0.870 26 H 0.064 0.936 27 H 0.211 0.789 28 H 0.163 0.837 29 H 0.412 0.588 30 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.846 -5.814 -3.559 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.214 6.214 3 C 0.210 3.790 4 N -0.334 5.334 5 C 0.046 3.954 6 C -0.324 4.324 7 C 0.222 3.778 8 N -0.293 5.293 9 C 0.245 3.755 10 C -0.370 4.370 11 H 0.131 0.869 12 C -0.168 4.168 13 N -0.349 5.349 14 Si 0.768 3.232 15 H -0.178 1.178 16 H -0.204 1.204 17 H -0.169 1.169 18 C -0.310 4.310 19 C 0.022 3.978 20 N -0.227 5.227 21 C 0.007 3.993 22 N -0.228 5.228 23 N -0.337 5.337 24 H 0.082 0.918 25 H 0.148 0.852 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.181 0.819 29 H 0.252 0.748 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.262 -6.185 -2.574 13.104 hybrid contribution 0.491 -0.176 -0.535 0.747 sum -10.771 -6.362 -3.109 12.890 Atomic orbital electron populations 1.23229 0.73690 1.05174 1.03046 1.86025 1.25376 1.22756 1.87215 1.20331 0.84709 0.85675 0.88251 1.68154 1.40380 0.99029 1.25866 1.23268 0.91699 0.94845 0.85599 1.22500 0.96367 0.99786 1.13754 1.18004 0.84560 0.88588 0.86662 1.42074 1.02421 1.09532 1.75240 1.16563 0.87492 0.80572 0.90880 1.20053 1.28024 0.98000 0.90951 0.86858 1.26959 0.90341 1.04767 0.94738 1.69335 1.19294 1.41828 1.04413 0.85694 0.82206 0.76727 0.78610 1.17831 1.20450 1.16921 1.12686 1.21827 1.00799 0.95644 1.24684 0.90606 0.91063 0.91440 1.81085 1.16160 1.14672 1.10738 1.25225 0.90905 0.91700 0.91424 1.81099 1.14984 1.13585 1.13153 1.66664 1.09760 1.29130 1.28103 0.91755 0.85237 0.91677 0.77204 0.81907 0.74804 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.36 113.37 1.17 2.01 16 2 O -0.31 -9.40 10.55 -87.57 -0.92 -10.33 16 3 C 0.51 17.43 8.49 180.58 1.53 18.96 16 4 N -0.60 -17.87 9.22 -313.71 -2.89 -20.76 16 5 C 0.21 5.53 11.29 84.58 0.95 6.49 16 6 C -0.30 -9.39 8.87 22.58 0.20 -9.19 16 7 C 0.46 16.45 5.20 133.10 0.69 17.14 16 8 N -0.66 -23.71 2.23 -184.28 -0.41 -24.12 16 9 C 0.35 12.96 4.49 38.98 0.17 13.14 16 10 C -0.34 -13.13 7.16 23.08 0.17 -12.96 16 11 H 0.11 4.70 7.46 -2.91 -0.02 4.68 16 12 C 0.06 2.38 5.29 85.56 0.45 2.84 16 13 N -0.73 -27.53 13.90 21.98 0.31 -27.23 16 14 Si 0.94 32.13 24.34 68.60 1.67 33.80 16 15 H -0.25 -9.18 5.65 99.48 0.56 -8.62 16 16 H -0.28 -9.24 7.11 99.48 0.71 -8.53 16 17 H -0.25 -8.22 6.60 99.48 0.66 -7.56 16 18 C -0.29 -11.65 5.88 -20.08 -0.12 -11.77 16 19 C 0.33 14.14 14.04 88.33 1.24 15.38 16 20 N -0.54 -24.73 18.54 19.00 0.35 -24.38 16 21 C 0.31 13.24 14.82 88.33 1.31 14.55 16 22 N -0.55 -24.35 18.54 19.00 0.35 -24.00 16 23 N -0.60 -22.30 9.72 -310.95 -3.02 -25.32 16 24 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 25 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 27 H 0.21 3.72 8.06 -2.91 -0.02 3.70 16 28 H 0.16 5.10 6.29 -2.91 -0.02 5.08 16 29 H 0.41 14.38 7.89 -92.71 -0.73 13.65 16 30 H 0.32 10.69 8.28 -92.71 -0.77 9.92 16 Total: -1.00 -52.99 284.58 3.51 -49.48 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.30 Total: 16.27 kcal Atomic # 6 Polarization: 48.80 SS G_CDS: 7.78 Total: 56.58 kcal Atomic # 7 Polarization: -140.49 SS G_CDS: -5.32 Total: -145.80 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.92 Total: -10.33 kcal Atomic # 14 Polarization: 32.13 SS G_CDS: 1.67 Total: 33.80 kcal Total: -52.99 3.51 -49.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169081140.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.404 kcal (2) G-P(sol) polarization free energy of solvation -52.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds