Wall clock time and date at job start Mon Mar 30 2020 01:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39933 * 119.90085 * 2 1 4 4 C 1.30636 * 120.98138 * 179.97438 * 3 2 1 5 5 C 1.39958 * 120.73181 * 359.72909 * 4 3 2 6 6 C 1.36784 * 119.71911 * 0.57367 * 5 4 3 7 7 N 1.39448 * 120.46386 * 179.70878 * 6 5 4 8 8 C 1.38266 * 120.00188 * 354.27769 * 7 6 5 9 9 C 1.39020 * 119.99482 * 300.19466 * 8 7 6 10 10 H 1.08004 * 119.99540 * 151.40914 * 9 8 7 11 11 C 1.40836 * 120.00072 * 331.67991 * 9 8 7 12 12 N 1.30334 * 120.00159 * 167.11908 * 11 9 8 13 13 Si 1.86805 * 119.99918 * 347.12058 * 11 9 8 14 14 H 1.48495 * 109.47230 * 84.99457 * 13 11 9 15 15 H 1.48507 * 109.46876 * 204.99597 * 13 11 9 16 16 H 1.48502 * 109.47071 * 324.99447 * 13 11 9 17 17 C 1.41174 * 120.00306 * 120.19124 * 8 7 6 18 18 C 1.43195 * 119.99870 * 5.26389 * 17 8 7 19 19 N 6.34518 * 127.83151 * 144.90367 * 2 1 3 20 20 C 1.43197 * 119.99509 * 185.26632 * 17 8 7 21 21 N 8.03772 * 159.83044 * 163.30847 * 2 1 3 22 22 C 1.34862 * 119.90359 * 180.02562 * 2 1 3 23 23 O 1.22053 * 120.34830 * 0.02779 * 22 2 1 24 24 H 1.09003 * 109.46953 * 269.97839 * 1 2 3 25 25 H 1.08999 * 109.47218 * 29.97492 * 1 2 3 26 26 H 1.08994 * 109.47160 * 149.97866 * 1 2 3 27 27 H 1.08004 * 119.63380 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.14279 * 180.28020 * 5 4 3 29 29 H 0.96998 * 120.00052 * 174.27167 * 7 6 5 30 30 H 0.96993 * 120.00567 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1625 1.2131 0.0000 4 6 3.4687 1.2377 0.0005 5 6 4.2064 0.0484 0.0067 6 6 3.5545 -1.1541 0.0005 7 7 4.2741 -2.3485 0.0005 8 6 5.6520 -2.3255 -0.1127 9 6 6.2479 -1.7599 -1.2341 10 1 7.2314 -1.3200 -1.1589 11 6 5.5668 -1.7555 -2.4668 12 7 6.0007 -1.0161 -3.4485 13 14 4.0413 -2.8093 -2.6947 14 1 2.8519 -2.0727 -2.1968 15 1 3.8643 -3.1186 -4.1364 16 1 4.1951 -4.0743 -1.9323 17 6 6.4536 -2.8763 0.9106 18 6 5.8414 -3.5585 2.0107 19 7 5.3567 -4.1004 2.8814 20 6 7.8788 -2.7526 0.8483 21 7 9.0098 -2.6546 0.7960 22 6 2.1373 -1.1691 -0.0005 23 8 1.5317 -2.2288 -0.0015 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5141 27 1 3.9849 2.1864 0.0001 28 1 5.2859 0.0799 0.0117 29 1 3.8081 -3.1955 0.0799 30 1 5.5315 -1.0128 -4.2973 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083504.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:49 Heat of formation + Delta-G solvation = 95.558824 kcal Electronic energy + Delta-G solvation = -20062.180203 eV Core-core repulsion = 16859.392446 eV Total energy + Delta-G solvation = -3202.787757 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96699 -38.14162 -37.05240 -35.61449 -34.89142 -34.31565 -33.34505 -31.35517 -29.14636 -27.78746 -27.36155 -23.84056 -22.93338 -21.30675 -19.37970 -18.61332 -17.72410 -17.03637 -16.54304 -16.21877 -15.85282 -15.58370 -15.06837 -14.07621 -13.59602 -13.40553 -13.07452 -12.95891 -12.66468 -12.62428 -12.39229 -12.29766 -12.10267 -11.80057 -11.72742 -11.66081 -11.33679 -11.11796 -11.03302 -10.73733 -10.44831 -9.97503 -9.60131 -9.13739 -8.43657 -7.89695 -7.25386 -5.56339 0.82942 1.84959 2.05558 2.33299 2.70381 2.74535 2.79636 3.33270 3.41057 3.68459 3.73198 3.93754 4.07786 4.16928 4.31641 4.99349 5.06156 5.16808 5.33717 5.36145 5.48652 5.61496 5.62536 5.98204 6.07806 6.18358 6.27314 6.55959 6.78656 7.04872 7.32972 7.54754 7.65999 7.84023 8.00865 8.08604 8.78927 8.99515 9.03697 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.008598 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.354462 B = 3255.710458 C = 3800.658321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.412 5.412 3 N -0.281 5.281 4 C 0.128 3.872 5 C -0.206 4.206 6 C 0.167 3.833 7 N -0.659 5.659 8 C 0.335 3.665 9 C -0.357 4.357 10 H 0.127 0.873 11 C 0.079 3.921 12 N -0.722 5.722 13 Si 0.919 3.081 14 H -0.255 1.255 15 H -0.281 1.281 16 H -0.248 1.248 17 C -0.289 4.289 18 C 0.304 3.696 19 N -0.522 5.522 20 C 0.323 3.677 21 N -0.520 5.520 22 C 0.501 3.499 23 O -0.545 6.545 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.190 0.810 28 H 0.162 0.838 29 H 0.412 0.588 30 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 6.949 -3.070 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.231 5.231 3 N -0.097 5.097 4 C -0.068 4.068 5 C -0.238 4.238 6 C 0.052 3.948 7 N -0.285 5.285 8 C 0.233 3.767 9 C -0.384 4.384 10 H 0.145 0.855 11 C -0.153 4.153 12 N -0.339 5.339 13 Si 0.744 3.256 14 H -0.180 1.180 15 H -0.208 1.208 16 H -0.172 1.172 17 C -0.307 4.307 18 C -0.004 4.004 19 N -0.204 5.204 20 C 0.014 3.986 21 N -0.201 5.201 22 C 0.294 3.706 23 O -0.424 6.424 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.206 0.794 28 H 0.180 0.820 29 H 0.251 0.749 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.428 6.353 -2.089 11.560 hybrid contribution -0.301 -1.059 -0.636 1.271 sum -9.730 5.294 -2.725 11.407 Atomic orbital electron populations 1.21715 0.74964 1.04107 1.03055 1.49183 1.07980 1.02240 1.63667 1.75329 1.10091 1.05078 1.19162 1.23522 0.89192 0.99602 0.94436 1.21546 1.03750 0.89815 1.08675 1.18593 0.90352 0.88157 0.97657 1.41915 1.05598 1.06157 1.74873 1.16882 0.78593 0.90025 0.91238 1.20071 1.03751 1.24432 0.90133 0.85514 1.26616 0.99177 0.94328 0.95228 1.69371 1.35717 1.24750 1.04054 0.86085 0.79487 0.81603 0.78424 1.18027 1.20837 1.17212 1.12768 0.83761 1.32406 1.01762 1.25093 0.92682 0.91158 0.91423 1.81023 1.09185 1.17224 1.12972 1.24557 0.91104 0.91104 0.91834 1.81103 1.12042 1.16132 1.10849 1.17248 0.88071 0.84736 0.80537 1.90952 1.70010 1.28885 1.52598 0.91333 0.89563 0.89403 0.79379 0.82039 0.74915 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.74 59.85 0.64 1.84 16 2 N -0.41 -6.38 3.91 -69.93 -0.27 -6.66 16 3 N -0.28 -3.97 11.56 30.61 0.35 -3.61 16 4 C 0.13 1.65 11.30 -17.42 -0.20 1.46 16 5 C -0.21 -3.19 8.81 -39.46 -0.35 -3.54 16 6 C 0.17 2.97 4.49 -83.59 -0.38 2.59 16 7 N -0.66 -12.38 2.24 -8.06 -0.02 -12.40 16 8 C 0.33 6.50 4.45 -83.56 -0.37 6.13 16 9 C -0.36 -7.04 7.16 -38.31 -0.27 -7.31 16 10 H 0.13 2.68 7.36 -52.48 -0.39 2.30 16 11 C 0.08 1.52 5.27 -17.21 -0.09 1.43 16 12 N -0.72 -14.09 13.90 55.60 0.77 -13.31 16 13 Si 0.92 16.82 24.42 -169.99 -4.15 12.67 16 14 H -0.26 -4.83 4.94 56.52 0.28 -4.56 16 15 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 16 H -0.25 -4.65 6.90 56.52 0.39 -4.26 16 17 C -0.29 -5.98 5.88 -104.94 -0.62 -6.60 16 18 C 0.30 6.62 14.80 -22.53 -0.33 6.29 16 19 N -0.52 -11.98 18.53 41.77 0.77 -11.21 16 20 C 0.32 7.05 13.99 -22.46 -0.31 6.74 16 21 N -0.52 -11.95 18.54 41.85 0.78 -11.17 16 22 C 0.50 9.08 6.36 -14.89 -0.09 8.99 16 23 O -0.55 -10.94 15.84 4.87 0.08 -10.87 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.04 7.43 -51.93 -0.39 0.65 16 27 H 0.19 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.16 2.51 6.14 -52.49 -0.32 2.19 16 29 H 0.41 7.90 7.41 -40.82 -0.30 7.59 16 30 H 0.31 5.39 8.29 -40.82 -0.34 5.06 16 LS Contribution 282.11 15.07 4.25 4.25 Total: -1.00 -26.39 282.11 -1.74 -28.13 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -1.93 Total: 6.16 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: -2.37 Total: 18.01 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 2.39 Total: -58.36 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -4.15 Total: 12.67 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.39 -1.74 -28.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083504.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.693 kcal (2) G-P(sol) polarization free energy of solvation -26.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds