Wall clock time and date at job start Mon Mar 30 2020 01:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39933 * 119.90085 * 2 1 4 4 C 1.30636 * 120.98138 * 179.97438 * 3 2 1 5 5 C 1.39958 * 120.73181 * 359.72909 * 4 3 2 6 6 C 1.36784 * 119.71911 * 0.57367 * 5 4 3 7 7 N 1.39448 * 120.46386 * 179.70878 * 6 5 4 8 8 C 1.38266 * 120.00188 * 354.27769 * 7 6 5 9 9 C 1.39020 * 119.99482 * 300.19466 * 8 7 6 10 10 H 1.08004 * 119.99540 * 151.40914 * 9 8 7 11 11 C 1.40836 * 120.00072 * 331.67991 * 9 8 7 12 12 N 1.30334 * 120.00159 * 167.11908 * 11 9 8 13 13 Si 1.86805 * 119.99918 * 347.12058 * 11 9 8 14 14 H 1.48495 * 109.47230 * 84.99457 * 13 11 9 15 15 H 1.48507 * 109.46876 * 204.99597 * 13 11 9 16 16 H 1.48502 * 109.47071 * 324.99447 * 13 11 9 17 17 C 1.41174 * 120.00306 * 120.19124 * 8 7 6 18 18 C 1.43195 * 119.99870 * 5.26389 * 17 8 7 19 19 N 6.34518 * 127.83151 * 144.90367 * 2 1 3 20 20 C 1.43197 * 119.99509 * 185.26632 * 17 8 7 21 21 N 8.03772 * 159.83044 * 163.30847 * 2 1 3 22 22 C 1.34862 * 119.90359 * 180.02562 * 2 1 3 23 23 O 1.22053 * 120.34830 * 0.02779 * 22 2 1 24 24 H 1.09003 * 109.46953 * 269.97839 * 1 2 3 25 25 H 1.08999 * 109.47218 * 29.97492 * 1 2 3 26 26 H 1.08994 * 109.47160 * 149.97866 * 1 2 3 27 27 H 1.08004 * 119.63380 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.14279 * 180.28020 * 5 4 3 29 29 H 0.96998 * 120.00052 * 174.27167 * 7 6 5 30 30 H 0.96993 * 120.00567 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1625 1.2131 0.0000 4 6 3.4687 1.2377 0.0005 5 6 4.2064 0.0484 0.0067 6 6 3.5545 -1.1541 0.0005 7 7 4.2741 -2.3485 0.0005 8 6 5.6520 -2.3255 -0.1127 9 6 6.2479 -1.7599 -1.2341 10 1 7.2314 -1.3200 -1.1589 11 6 5.5668 -1.7555 -2.4668 12 7 6.0007 -1.0161 -3.4485 13 14 4.0413 -2.8093 -2.6947 14 1 2.8519 -2.0727 -2.1968 15 1 3.8643 -3.1186 -4.1364 16 1 4.1951 -4.0743 -1.9323 17 6 6.4536 -2.8763 0.9106 18 6 5.8414 -3.5585 2.0107 19 7 5.3567 -4.1004 2.8814 20 6 7.8788 -2.7526 0.8483 21 7 9.0098 -2.6546 0.7960 22 6 2.1373 -1.1691 -0.0005 23 8 1.5317 -2.2288 -0.0015 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5141 27 1 3.9849 2.1864 0.0001 28 1 5.2859 0.0799 0.0117 29 1 3.8081 -3.1955 0.0799 30 1 5.5315 -1.0128 -4.2973 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083504.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:49 Heat of formation + Delta-G solvation = 78.408984 kcal Electronic energy + Delta-G solvation = -20062.923876 eV Core-core repulsion = 16859.392446 eV Total energy + Delta-G solvation = -3203.531430 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24400 -39.59989 -38.32254 -37.28111 -36.63659 -35.81592 -34.63046 -32.78737 -30.51154 -29.18604 -28.66786 -25.11449 -24.15375 -22.81455 -20.93567 -19.92139 -19.27954 -18.34874 -18.04778 -17.55530 -17.14867 -16.95439 -16.35505 -15.24471 -14.98902 -14.88311 -14.58495 -14.56224 -14.26924 -13.86599 -13.67709 -13.51169 -13.49021 -13.45505 -13.32297 -13.18368 -12.90710 -12.84353 -12.33008 -12.28847 -11.89944 -11.42565 -10.88810 -10.42418 -9.92370 -9.44393 -8.65004 -7.21056 -0.44804 0.32545 0.83129 1.15982 1.24054 1.28600 1.33731 1.87058 1.94688 2.03940 2.18627 2.41382 2.49358 2.54099 3.06814 3.29945 3.66699 3.95017 4.09147 4.32643 4.38976 4.47294 4.57333 4.68364 4.74914 4.92105 5.02573 5.27758 5.39901 5.48466 5.72020 6.00504 6.19960 6.46323 6.57661 6.88615 7.07983 7.27415 7.52964 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.008598 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.354462 B = 3255.710458 C = 3800.658321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.413 5.413 3 N -0.274 5.274 4 C 0.133 3.867 5 C -0.186 4.186 6 C 0.135 3.865 7 N -0.667 5.667 8 C 0.349 3.651 9 C -0.350 4.350 10 H 0.115 0.885 11 C 0.073 3.927 12 N -0.728 5.728 13 Si 0.948 3.052 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.259 1.259 17 C -0.298 4.298 18 C 0.314 3.686 19 N -0.548 5.548 20 C 0.330 3.670 21 N -0.544 5.544 22 C 0.490 3.510 23 O -0.578 6.578 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.237 0.763 28 H 0.163 0.837 29 H 0.407 0.593 30 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 8.786 -3.799 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.230 5.230 3 N -0.090 5.090 4 C -0.062 4.062 5 C -0.217 4.217 6 C 0.022 3.978 7 N -0.295 5.295 8 C 0.246 3.754 9 C -0.377 4.377 10 H 0.132 0.868 11 C -0.159 4.159 12 N -0.346 5.346 13 Si 0.773 3.227 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.184 1.184 17 C -0.316 4.316 18 C 0.007 3.993 19 N -0.231 5.231 20 C 0.023 3.977 21 N -0.227 5.227 22 C 0.283 3.717 23 O -0.461 6.461 24 H 0.100 0.900 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.253 0.747 28 H 0.180 0.820 29 H 0.245 0.755 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.136 8.245 -2.828 13.368 hybrid contribution -0.121 -1.454 -0.483 1.536 sum -10.256 6.792 -3.311 12.739 Atomic orbital electron populations 1.22005 0.73023 1.05172 1.04328 1.49523 1.09373 1.01884 1.62222 1.75417 1.10650 1.04188 1.18698 1.24245 0.88674 1.00447 0.92845 1.21833 1.03996 0.90057 1.05834 1.18788 0.90569 0.88349 1.00061 1.41824 1.05057 1.06523 1.76081 1.16693 0.79010 0.89207 0.90474 1.20004 1.03080 1.24125 0.90464 0.86777 1.26748 0.99664 0.94582 0.94930 1.69335 1.36029 1.24608 1.04616 0.85646 0.78197 0.80544 0.78315 1.18792 1.20158 1.18366 1.12775 0.83348 1.33405 1.02094 1.25193 0.92169 0.90743 0.91210 1.81017 1.09906 1.18325 1.13818 1.24683 0.91223 0.90570 0.91252 1.81098 1.12622 1.17262 1.11669 1.17403 0.88275 0.85150 0.80845 1.90921 1.70532 1.29995 1.54637 0.89956 0.86882 0.89966 0.74720 0.81957 0.75464 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.01 10.74 127.77 1.37 3.38 16 2 N -0.41 -11.95 3.91 -493.18 -1.93 -13.88 16 3 N -0.27 -6.85 11.56 -57.07 -0.66 -7.51 16 4 C 0.13 2.95 11.30 85.29 0.96 3.91 16 5 C -0.19 -5.33 8.81 22.35 0.20 -5.13 16 6 C 0.13 4.64 4.49 38.45 0.17 4.81 16 7 N -0.67 -24.82 2.24 -179.41 -0.40 -25.22 16 8 C 0.35 13.34 4.45 39.04 0.17 13.51 16 9 C -0.35 -13.42 7.16 23.09 0.17 -13.25 16 10 H 0.11 4.72 7.36 -2.91 -0.02 4.70 16 11 C 0.07 2.72 5.27 85.55 0.45 3.17 16 12 N -0.73 -26.91 13.90 21.98 0.31 -26.61 16 13 Si 0.95 33.50 24.42 68.60 1.68 35.18 16 14 H -0.26 -9.70 4.94 99.48 0.49 -9.20 16 15 H -0.28 -9.34 7.11 99.48 0.71 -8.63 16 16 H -0.26 -9.59 6.90 99.48 0.69 -8.91 16 17 C -0.30 -12.24 5.88 -20.07 -0.12 -12.36 16 18 C 0.31 13.65 14.80 88.35 1.31 14.96 16 19 N -0.55 -25.21 18.53 18.98 0.35 -24.86 16 20 C 0.33 14.34 13.99 88.33 1.24 15.58 16 21 N -0.54 -24.86 18.54 19.01 0.35 -24.51 16 22 C 0.49 17.31 6.36 85.09 0.54 17.85 16 23 O -0.58 -23.28 15.84 -5.49 -0.09 -23.36 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.08 1.86 7.43 -2.39 -0.02 1.84 16 27 H 0.24 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.16 4.68 6.14 -2.91 -0.02 4.66 16 29 H 0.41 15.77 7.41 -92.71 -0.69 15.08 16 30 H 0.32 10.47 8.29 -92.71 -0.77 9.70 16 Total: -1.00 -55.44 282.11 6.38 -49.06 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.31 Total: 15.29 kcal Atomic # 6 Polarization: 39.96 SS G_CDS: 6.46 Total: 46.43 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -1.98 Total: -122.58 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.09 Total: -23.36 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 1.68 Total: 35.18 kcal Total: -55.44 6.38 -49.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083504.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.465 kcal (2) G-P(sol) polarization free energy of solvation -55.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds