Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35599 * 116.99976 * 2 1 4 4 N 1.32681 * 120.55130 * 0.02562 * 3 2 1 5 5 C 1.31833 * 120.79673 * 179.97438 * 4 3 2 6 6 N 1.31742 * 121.97378 * 0.02562 * 5 4 3 7 7 C 1.32477 * 121.02765 * 359.97438 * 6 5 4 8 8 C 1.38843 * 119.08229 * 359.72711 * 7 6 5 9 9 N 1.39998 * 120.89399 * 180.27570 * 8 7 6 10 10 C 1.38241 * 119.99665 * 6.28104 * 9 8 7 11 11 C 1.39024 * 120.00008 * 60.58424 * 10 9 8 12 12 H 1.08004 * 119.99534 * 199.78417 * 11 10 9 13 13 C 1.40819 * 120.00179 * 19.79117 * 11 10 9 14 14 N 1.30343 * 119.99741 * 9.50443 * 13 11 10 15 15 Si 1.86799 * 119.99932 * 189.50867 * 13 11 10 16 16 H 1.48499 * 109.46959 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47197 * 119.99734 * 15 13 11 18 18 H 1.48494 * 109.47039 * 239.99424 * 15 13 11 19 19 C 1.41178 * 119.99896 * 240.57974 * 10 9 8 20 20 C 1.43197 * 120.00167 * 174.77349 * 19 10 9 21 21 N 7.59506 * 174.38358 * 280.11245 * 2 1 3 22 22 C 1.43200 * 119.99775 * 354.77612 * 19 10 9 23 23 N 5.17077 * 141.06514 * 242.65035 * 2 1 3 24 24 H 1.09001 * 109.47267 * 299.99970 * 1 2 3 25 25 H 1.09003 * 109.46701 * 59.99516 * 1 2 3 26 26 H 1.08998 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.01441 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.46398 * 180.02562 * 7 6 5 29 29 H 0.96997 * 120.00355 * 186.28077 * 9 8 7 30 30 H 0.97001 * 119.99514 * 184.98927 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3327 2.3279 0.0005 5 6 1.9262 3.5050 0.0010 6 7 3.2382 3.6249 0.0005 7 6 4.0215 2.5565 0.0000 8 6 3.4419 1.2948 0.0058 9 7 4.2336 0.1402 0.0112 10 6 5.6059 0.2437 0.1420 11 6 6.1539 0.8244 1.2800 12 1 7.1674 1.1973 1.2614 13 6 5.3877 0.9263 2.4571 14 7 4.2390 0.3162 2.5418 15 14 6.0176 1.9359 3.8971 16 1 7.3369 2.5228 3.5506 17 1 5.0540 3.0254 4.1969 18 1 6.1627 1.0618 5.0886 19 6 6.4509 -0.2403 -0.8802 20 6 7.8654 -0.0334 -0.7979 21 7 8.9876 0.1305 -0.7318 22 6 5.8933 -0.9382 -1.9995 23 7 5.4512 -1.4929 -2.8863 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.3187 4.3980 0.0010 28 1 5.0960 2.6653 0.0001 29 1 3.8193 -0.7324 -0.0767 30 1 3.6782 0.4445 3.3228 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083906.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = 58.350329 kcal Electronic energy + Delta-G solvation = -19985.660650 eV Core-core repulsion = 16781.259412 eV Total energy + Delta-G solvation = -3204.401238 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.09134 -39.34846 -39.06478 -37.09178 -36.54062 -35.24690 -33.86680 -32.94228 -30.03709 -28.88464 -28.29960 -24.97460 -24.56461 -22.89018 -20.71462 -19.58560 -19.40510 -18.87218 -17.81905 -17.32367 -17.02505 -16.72274 -15.86085 -15.48253 -15.24296 -14.99024 -14.62512 -14.38259 -14.21208 -13.89689 -13.49774 -13.39081 -13.34326 -13.11367 -12.91764 -12.79005 -12.70873 -12.51015 -12.19716 -12.04885 -11.79466 -11.57482 -10.88897 -10.25787 -9.87416 -9.24405 -8.21546 -7.15784 0.13032 0.27150 0.74465 1.36344 1.51067 1.53208 2.03450 2.05752 2.07596 2.23952 2.28453 2.57966 2.71470 3.01945 3.31591 3.40808 3.55980 3.82320 3.97499 4.15569 4.47569 4.49784 4.61227 4.65721 4.72066 4.81151 5.33295 5.42054 5.59771 5.98211 6.03448 6.10603 6.23424 6.69383 6.85097 7.19180 7.29080 7.34922 7.67189 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.009348 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.078275 B = 2994.661283 C = 4114.537977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.316 6.316 3 C 0.291 3.709 4 N -0.546 5.546 5 C 0.249 3.751 6 N -0.512 5.512 7 C 0.083 3.917 8 C 0.140 3.860 9 N -0.642 5.642 10 C 0.375 3.625 11 C -0.372 4.372 12 H 0.110 0.890 13 C 0.049 3.951 14 N -0.719 5.719 15 Si 0.972 3.028 16 H -0.249 1.249 17 H -0.260 1.260 18 H -0.258 1.258 19 C -0.321 4.321 20 C 0.331 3.669 21 N -0.553 5.553 22 C 0.316 3.684 23 N -0.557 5.557 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.119 0.881 27 H 0.225 0.775 28 H 0.172 0.828 29 H 0.407 0.593 30 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 4.863 6.341 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.221 6.221 3 C 0.098 3.902 4 N -0.276 5.276 5 C -0.039 4.039 6 N -0.229 5.229 7 C -0.084 4.084 8 C 0.031 3.969 9 N -0.264 5.264 10 C 0.270 3.730 11 C -0.399 4.399 12 H 0.128 0.872 13 C -0.182 4.182 14 N -0.336 5.336 15 Si 0.791 3.209 16 H -0.172 1.172 17 H -0.184 1.184 18 H -0.182 1.182 19 C -0.340 4.340 20 C 0.024 3.976 21 N -0.237 5.237 22 C 0.010 3.990 23 N -0.240 5.240 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.137 0.863 27 H 0.241 0.759 28 H 0.189 0.811 29 H 0.244 0.756 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.763 4.641 5.233 12.010 hybrid contribution 0.004 -0.749 0.781 1.082 sum -9.759 3.892 6.013 12.106 Atomic orbital electron populations 1.23044 0.75579 1.04474 1.02301 1.86182 1.24516 1.23579 1.87852 1.19673 0.87735 0.86028 0.96764 1.67956 1.41074 0.98867 1.19669 1.24890 0.88561 0.94210 0.96261 1.68228 1.06927 1.32977 1.14806 1.22882 1.01236 0.85275 0.98975 1.18560 0.88150 0.89828 1.00329 1.41043 1.03403 1.05784 1.76155 1.16760 0.80372 0.87054 0.88769 1.20530 1.00857 1.26297 0.92266 0.87177 1.26976 0.94214 0.94567 1.02464 1.69532 1.08377 1.25247 1.30478 0.85195 0.80660 0.78531 0.76541 1.17225 1.18392 1.18236 1.12974 0.84158 1.35384 1.01485 1.24790 0.91315 0.90374 0.91143 1.81065 1.12629 1.18055 1.11907 1.25289 0.91998 0.90488 0.91200 1.81043 1.10056 1.19048 1.13901 0.92203 0.92378 0.86308 0.75875 0.81054 0.75588 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.41 113.37 1.18 2.10 16 2 O -0.32 -10.06 9.87 -89.09 -0.88 -10.94 16 3 C 0.29 9.94 7.55 84.99 0.64 10.59 16 4 N -0.55 -17.00 9.38 -312.44 -2.93 -19.93 16 5 C 0.25 7.20 12.28 180.89 2.22 9.42 16 6 N -0.51 -16.88 10.43 -199.76 -2.08 -18.97 16 7 C 0.08 2.96 9.84 84.74 0.83 3.80 16 8 C 0.14 5.07 5.14 38.41 0.20 5.27 16 9 N -0.64 -24.18 3.32 -178.84 -0.59 -24.78 16 10 C 0.38 14.81 5.03 39.04 0.20 15.01 16 11 C -0.37 -14.13 7.02 23.09 0.16 -13.97 16 12 H 0.11 4.25 6.99 -2.91 -0.02 4.23 16 13 C 0.05 1.71 4.77 85.55 0.41 2.12 16 14 N -0.72 -25.53 10.92 21.98 0.24 -25.29 16 15 Si 0.97 28.11 29.58 68.60 2.03 30.14 16 16 H -0.25 -7.39 7.11 99.48 0.71 -6.69 16 17 H -0.26 -7.49 7.11 99.48 0.71 -6.78 16 18 H -0.26 -7.30 7.11 99.48 0.71 -6.60 16 19 C -0.32 -13.62 5.88 -20.07 -0.12 -13.74 16 20 C 0.33 14.68 13.89 88.33 1.23 15.90 16 21 N -0.55 -25.60 18.54 19.00 0.35 -25.25 16 22 C 0.32 14.14 14.81 88.34 1.31 15.45 16 23 N -0.56 -26.08 18.53 19.00 0.35 -25.73 16 24 H 0.06 1.31 8.12 -2.39 -0.02 1.30 16 25 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 26 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.23 4.50 8.06 -2.91 -0.02 4.48 16 28 H 0.17 6.16 6.36 -2.91 -0.02 6.14 16 29 H 0.41 15.57 8.30 -92.71 -0.77 14.80 16 30 H 0.31 10.06 8.29 -92.71 -0.77 9.29 16 Total: -1.00 -50.56 290.90 5.21 -45.35 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.46 Total: 23.45 kcal Atomic # 6 Polarization: 43.68 SS G_CDS: 8.26 Total: 51.94 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -4.66 Total: -139.94 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.88 Total: -10.94 kcal Atomic # 14 Polarization: 28.11 SS G_CDS: 2.03 Total: 30.14 kcal Total: -50.56 5.21 -45.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083906.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.703 kcal (2) G-P(sol) polarization free energy of solvation -50.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds