Wall clock time and date at job start Mon Mar 30 2020 01:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99399 * 2 1 4 4 H 1.09003 * 109.47355 * 329.99432 * 3 2 1 5 5 C 1.52994 * 109.47464 * 90.00111 * 3 2 1 6 6 C 1.53000 * 109.46645 * 209.99924 * 3 2 1 7 7 N 1.46508 * 109.47181 * 65.00189 * 6 3 2 8 8 C 1.38538 * 119.99763 * 179.97438 * 7 6 3 9 9 C 1.40034 * 120.45227 * 359.97438 * 8 7 6 10 10 C 1.38800 * 118.59740 * 179.97438 * 9 8 7 11 11 Cl 1.73596 * 120.34510 * 179.97438 * 10 9 8 12 12 N 1.32209 * 119.31959 * 359.97438 * 10 9 8 13 13 C 1.33420 * 120.86452 * 0.02562 * 12 10 9 14 14 C 1.41575 * 119.23989 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99760 * 179.97438 * 14 13 12 16 16 C 1.40047 * 119.99799 * 0.27929 * 14 13 12 17 17 N 1.30694 * 120.00429 * 359.71982 * 16 14 13 18 18 Si 1.86801 * 119.99850 * 179.72049 * 16 14 13 19 19 H 1.48496 * 109.47377 * 60.00093 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99707 * 18 16 14 22 22 N 1.32569 * 120.44494 * 180.24756 * 8 7 6 23 23 H 1.09003 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47040 * 299.99784 * 1 2 3 25 25 H 1.09000 * 109.47408 * 60.00315 * 1 2 3 26 26 H 1.09002 * 109.47515 * 179.97438 * 5 3 2 27 27 H 1.09009 * 109.46997 * 299.99900 * 5 3 2 28 28 H 1.09002 * 109.46923 * 59.99595 * 5 3 2 29 29 H 1.08996 * 109.47665 * 305.00057 * 6 3 2 30 30 H 1.08998 * 109.47085 * 184.99669 * 6 3 2 31 31 H 0.97002 * 119.99920 * 359.97438 * 7 6 3 32 32 H 1.08005 * 120.70516 * 359.97438 * 9 8 7 33 33 H 0.96995 * 120.00257 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3588 1.2634 -0.7213 7 7 3.1476 0.9331 -2.1329 8 6 4.2306 0.8380 -2.9916 9 6 5.5311 1.0562 -2.5205 10 6 6.5879 0.9506 -3.4141 11 17 8.2185 1.2125 -2.8790 12 7 6.3400 0.6484 -4.6771 13 6 5.0910 0.4454 -5.0998 14 6 4.8648 0.1241 -6.4600 15 1 3.8587 -0.0431 -6.8153 16 6 5.9463 0.0168 -7.3433 17 7 7.1639 0.2187 -6.9132 18 14 5.6486 -0.4148 -9.1362 19 1 4.7801 0.6178 -9.7563 20 1 6.9470 -0.4656 -9.8552 21 1 4.9823 -1.7391 -9.2225 22 7 4.0493 0.5446 -4.2716 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.6613 2.7672 1.4424 27 1 1.2567 1.8015 1.9563 28 1 2.8829 1.0776 1.9562 29 1 3.9931 0.5053 -0.2618 30 1 3.8425 2.2371 -0.6444 31 1 2.2494 0.7811 -2.4663 32 1 5.7082 1.3015 -1.4837 33 1 7.9129 0.1440 -7.5249 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169772498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:44 Heat of formation + Delta-G solvation = -28.906485 kcal Electronic energy + Delta-G solvation = -18169.160260 eV Core-core repulsion = 15062.082776 eV Total energy + Delta-G solvation = -3107.077484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92856 -39.47914 -37.43586 -36.95068 -35.31969 -33.54008 -32.57803 -30.94353 -28.32795 -27.68380 -26.65063 -24.05960 -23.26741 -22.24485 -19.77634 -18.41018 -17.93252 -17.72379 -16.65322 -16.34569 -16.02458 -15.79253 -15.57615 -15.20206 -14.92664 -14.55130 -14.36039 -13.67488 -13.36489 -13.23516 -13.08546 -12.90017 -12.76348 -12.74462 -12.30308 -12.02403 -11.96266 -11.78338 -11.54697 -10.92337 -10.89959 -10.60733 -10.11857 -9.41921 -8.80737 -8.42487 -6.79006 0.64814 1.13521 1.14578 1.43139 1.56780 1.57564 2.21120 2.39723 2.75864 2.81056 3.79804 3.87586 4.07635 4.18333 4.27473 4.46404 4.50443 4.57142 4.62210 4.64872 4.75439 4.82997 4.90417 4.96196 4.99305 5.12491 5.27560 5.37098 6.01587 6.17235 6.27232 6.49361 6.68878 6.75029 7.22803 8.20545 8.37902 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.005021 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.568172 B = 5575.504741 C = 6884.875458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.079 3.921 4 H 0.077 0.923 5 C -0.165 4.165 6 C 0.133 3.867 7 N -0.712 5.712 8 C 0.448 3.552 9 C -0.401 4.401 10 C 0.247 3.753 11 Cl -0.057 7.057 12 N -0.563 5.563 13 C 0.408 3.592 14 C -0.428 4.428 15 H 0.095 0.905 16 C 0.025 3.975 17 N -0.739 5.739 18 Si 1.001 2.999 19 H -0.257 1.257 20 H -0.264 1.264 21 H -0.258 1.258 22 N -0.667 5.667 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.401 0.599 32 H 0.139 0.861 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 2.794 11.068 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.021 3.979 4 H 0.095 0.905 5 C -0.223 4.223 6 C 0.009 3.991 7 N -0.348 5.348 8 C 0.200 3.800 9 C -0.433 4.433 10 C 0.068 3.932 11 Cl -0.029 7.029 12 N -0.286 5.286 13 C 0.171 3.829 14 C -0.464 4.464 15 H 0.113 0.887 16 C -0.200 4.200 17 N -0.361 5.361 18 Si 0.820 3.180 19 H -0.181 1.181 20 H -0.188 1.188 21 H -0.182 1.182 22 N -0.399 5.399 23 H 0.108 0.892 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.236 0.764 32 H 0.157 0.843 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.764 2.484 10.262 13.106 hybrid contribution -0.008 0.151 0.212 0.261 sum -7.773 2.635 10.475 13.307 Atomic orbital electron populations 1.22953 0.79710 1.03563 1.00864 1.87968 1.21279 1.28189 1.95262 1.22391 0.93360 0.85059 0.97105 0.90516 1.22164 1.03429 1.02489 0.94198 1.21620 0.97417 1.01110 0.78918 1.44107 1.05812 1.77260 1.07581 1.18504 0.87074 0.86563 0.87887 1.21177 0.91082 1.29594 1.01474 1.21894 0.86164 0.93386 0.91781 1.98281 1.21732 1.94468 1.88372 1.68586 1.23462 1.23203 1.13316 1.19891 0.80996 0.88109 0.93940 1.19671 0.95855 1.40414 0.90424 0.88707 1.27089 0.93722 0.93103 1.06063 1.70222 1.00211 1.27618 1.38040 0.84982 0.79007 0.79914 0.74083 1.18068 1.18789 1.18185 1.68264 1.35883 1.32468 1.03262 0.89165 0.92374 0.93604 0.89796 0.90764 0.91831 0.92271 0.89769 0.76383 0.84334 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.82 113.37 1.23 1.65 16 2 O -0.41 -9.80 10.29 -148.98 -1.53 -11.33 16 3 C 0.08 1.62 2.75 30.59 0.08 1.70 16 4 H 0.08 1.41 7.79 -2.39 -0.02 1.39 16 5 C -0.16 -2.48 9.53 71.98 0.69 -1.79 16 6 C 0.13 3.59 4.59 86.38 0.40 3.99 16 7 N -0.71 -25.60 5.66 -344.55 -1.95 -27.55 16 8 C 0.45 21.01 7.71 133.39 1.03 22.04 16 9 C -0.40 -18.43 9.23 22.84 0.21 -18.22 16 10 C 0.25 12.60 7.33 84.77 0.62 13.22 16 11 Cl -0.06 -2.42 29.15 -2.72 -0.08 -2.50 16 12 N -0.56 -32.69 7.86 -185.03 -1.45 -34.15 16 13 C 0.41 23.97 7.37 135.16 1.00 24.96 16 14 C -0.43 -24.07 9.37 23.53 0.22 -23.85 16 15 H 0.09 5.09 7.85 -2.91 -0.02 5.06 16 16 C 0.02 1.26 5.50 85.30 0.47 1.73 16 17 N -0.74 -39.98 11.42 21.84 0.25 -39.73 16 18 Si 1.00 37.94 29.56 68.60 2.03 39.97 16 19 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 20 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 22 N -0.67 -36.32 10.39 -191.54 -1.99 -38.31 16 23 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 0.74 7.87 -2.39 -0.02 0.72 16 25 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 0.92 7.87 -2.38 -0.02 0.90 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.71 7.97 -2.39 -0.02 1.69 16 30 H 0.08 2.07 7.97 -2.39 -0.02 2.05 16 31 H 0.40 13.85 8.60 -92.71 -0.80 13.06 16 32 H 0.14 5.41 6.85 -2.91 -0.02 5.39 16 33 H 0.28 13.82 8.29 -92.71 -0.77 13.06 16 Total: -1.00 -68.35 303.40 1.55 -66.80 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.34 Total: 21.37 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 5.94 Total: 25.43 kcal Atomic # 7 Polarization: -134.60 SS G_CDS: -5.14 Total: -139.74 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.53 Total: -11.33 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.08 Total: -2.50 kcal Total: -68.35 1.55 -66.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169772498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.895 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds