Wall clock time and date at job start Mon Mar 30 2020 00:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29519 * 1 3 3 Si 1.86794 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47278 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47092 * 30.00200 * 3 2 1 6 6 H 1.48504 * 109.47019 * 150.00288 * 3 2 1 7 7 C 1.46532 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99693 * 189.58452 * 7 2 1 9 9 C 1.40409 * 120.00126 * 9.58060 * 7 2 1 10 10 C 1.41467 * 120.21947 * 27.63482 * 9 7 2 11 11 C 1.37762 * 120.00331 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.47628 * 0.25738 * 11 10 9 13 13 N 1.48032 * 119.77360 * 179.72106 * 12 11 10 14 14 O 1.31707 * 119.99778 * 354.69709 * 13 12 11 15 15 O 1.31700 * 120.00291 * 174.69834 * 13 12 11 16 16 C 1.40210 * 120.45266 * 359.44371 * 12 11 10 17 17 N 1.37713 * 120.01262 * 180.27533 * 16 12 11 18 18 C 1.32516 * 119.99630 * 138.13270 * 17 16 12 19 19 C 1.48493 * 126.82625 * 355.60229 * 18 17 16 20 20 C 1.33852 * 107.38857 * 179.87741 * 19 18 17 21 21 C 1.48673 * 109.43361 * 0.38800 * 20 19 18 22 22 C 1.33843 * 109.43599 * 359.74463 * 21 20 19 23 23 H 1.07997 * 126.30678 * 180.02562 * 22 21 20 24 24 C 1.39183 * 119.97871 * 0.57330 * 16 12 11 25 25 H 0.96993 * 119.99541 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.00106 * 359.97438 * 10 9 7 27 27 H 1.07991 * 119.76365 * 179.97438 * 11 10 9 28 28 H 0.96992 * 120.00163 * 318.13936 * 17 16 12 29 29 H 1.07998 * 126.30783 * 0.02562 * 19 18 17 30 30 H 1.07999 * 125.28415 * 180.12996 * 20 19 18 31 31 H 1.07989 * 125.28203 * 179.76827 * 21 20 19 32 32 H 1.07993 * 120.23822 * 179.73009 * 24 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 2.4767 2.0464 -1.4001 5 1 1.4266 2.6526 0.7001 6 1 3.5268 1.4401 0.7000 7 6 2.0278 -1.2690 -0.0006 8 1 3.0965 -1.2756 0.1552 9 6 1.3404 -2.4764 -0.2035 10 6 0.1422 -2.4959 -0.9553 11 6 -0.5283 -3.6832 -1.1521 12 6 -0.0416 -4.8616 -0.6144 13 7 -0.7779 -6.1275 -0.8303 14 8 -1.9445 -6.1147 -1.4416 15 8 -0.2667 -7.2665 -0.4111 16 6 1.1474 -4.8658 0.1288 17 7 1.6266 -6.0448 0.6550 18 6 2.9226 -6.3158 0.6014 19 6 3.9742 -5.5071 -0.0658 20 6 5.1412 -6.1351 0.1220 21 6 4.9136 -7.3782 0.9051 22 6 3.6111 -7.4920 1.1913 23 1 3.1464 -8.2918 1.7488 24 6 1.8400 -3.6771 0.3396 25 1 -0.4849 0.8400 0.0004 26 1 -0.2469 -1.5802 -1.3751 27 1 -1.4429 -3.6935 -1.7263 28 1 1.0155 -6.6767 1.0648 29 1 3.8253 -4.5813 -0.6017 30 1 6.0989 -5.7941 -0.2426 31 1 5.6802 -8.0801 1.1980 32 1 2.7539 -3.6748 0.9150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171360033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:12 Heat of formation + Delta-G solvation = 67.229593 kcal Electronic energy + Delta-G solvation = -19745.537785 eV Core-core repulsion = 16560.999001 eV Total energy + Delta-G solvation = -3184.538784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -37.51792 -35.47055 -35.00654 -33.21985 -32.19770 -31.21798 -29.35315 -27.07665 -25.56113 -25.00554 -22.81996 -21.94606 -19.56074 -19.41527 -17.13338 -16.46924 -15.95083 -15.26688 -14.98349 -14.62263 -13.97381 -13.77324 -12.97931 -12.51750 -12.35718 -11.43224 -11.23561 -10.77277 -10.61735 -10.45388 -10.10536 -10.05362 -9.51281 -9.24099 -9.22830 -8.80796 -8.59691 -8.45650 -8.37836 -8.28400 -8.10060 -7.99043 -7.55795 -6.83638 -6.38231 -5.83867 -4.78460 -3.80460 -2.68933 2.17004 3.44893 3.54810 3.62379 4.07596 4.10828 4.30938 4.40000 5.14013 6.14698 6.23877 6.33249 6.52285 7.17954 7.36118 7.67388 7.73420 8.06630 8.13891 8.20831 8.25241 8.27269 8.39820 8.45068 8.64570 8.78105 8.81209 8.96773 8.99403 9.27241 9.49650 9.63831 9.68904 9.85727 9.88198 10.07101 10.50651 10.52105 10.85804 11.04937 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.006705 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.655035 B = 4174.923404 C = 5835.216413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.067 3.933 3 Si 0.927 3.073 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.417 4.417 8 H 0.094 0.906 9 C 0.140 3.860 10 C -0.166 4.166 11 C -0.054 4.054 12 C -0.130 4.130 13 N 0.053 4.947 14 O -0.363 6.363 15 O -0.331 6.331 16 C 0.268 3.732 17 N -0.573 5.573 18 C -0.085 4.085 19 C -0.196 4.196 20 C -0.274 4.274 21 C -0.271 4.271 22 C -0.216 4.216 23 H 0.074 0.926 24 C -0.278 4.278 25 H 0.290 0.710 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.395 0.605 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 11.618 -0.076 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.159 4.159 3 Si 0.749 3.251 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.445 4.445 8 H 0.112 0.888 9 C 0.135 3.865 10 C -0.188 4.188 11 C -0.074 4.074 12 C -0.238 4.238 13 N 0.463 4.537 14 O -0.506 6.506 15 O -0.479 6.479 16 C 0.155 3.845 17 N -0.187 5.187 18 C -0.184 4.184 19 C -0.216 4.216 20 C -0.294 4.294 21 C -0.291 4.291 22 C -0.237 4.237 23 H 0.092 0.908 24 C -0.303 4.303 25 H 0.102 0.898 26 H 0.148 0.852 27 H 0.129 0.871 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.750 11.799 -0.095 11.929 hybrid contribution -0.201 0.000 0.090 0.220 sum -1.951 11.800 -0.005 11.960 Atomic orbital electron populations 1.69175 1.08821 1.30529 1.28418 1.27687 0.94667 1.02287 0.91277 0.86014 0.80766 0.78655 0.79616 1.18835 1.20101 1.17719 1.21138 0.95925 0.88874 1.38529 0.88801 1.17690 0.90382 0.92286 0.86116 1.21474 0.98129 0.95453 1.03723 1.20213 0.98761 0.90551 0.97887 1.20132 1.01310 0.82158 1.20159 1.49832 1.00864 1.03597 0.99447 1.95997 1.06990 1.95987 1.51623 1.96010 1.72116 1.18027 1.61713 1.17212 0.89624 0.87295 0.90384 1.39294 1.07103 1.16636 1.55687 1.19980 0.82096 1.01149 1.15133 1.21077 0.92551 0.99956 1.08052 1.20989 0.94434 1.00369 1.13563 1.20894 0.94046 1.00315 1.13801 1.20722 0.94170 0.98411 1.10414 0.90765 1.21070 1.07226 0.89362 1.12670 0.89779 0.85190 0.87067 0.76783 0.89084 0.91522 0.91665 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -24.36 10.85 55.98 0.61 -23.75 16 2 C 0.07 2.17 5.44 -15.19 -0.08 2.09 16 3 Si 0.93 24.63 29.65 -169.99 -5.04 19.59 16 4 H -0.26 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.25 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.42 -14.97 9.31 -35.42 -0.33 -15.30 16 8 H 0.09 3.31 7.95 -52.49 -0.42 2.89 16 9 C 0.14 5.40 5.60 -106.83 -0.60 4.80 16 10 C -0.17 -6.20 8.75 -38.53 -0.34 -6.54 16 11 C -0.05 -2.06 9.54 -39.70 -0.38 -2.44 16 12 C -0.13 -5.34 6.94 -79.15 -0.55 -5.89 16 13 N 0.05 2.24 4.99 34.35 0.17 2.41 16 14 O -0.36 -15.07 19.14 -31.57 -0.60 -15.67 16 15 O -0.33 -14.28 16.77 -31.57 -0.53 -14.81 16 16 C 0.27 11.19 6.06 -84.13 -0.51 10.68 16 17 N -0.57 -24.28 4.14 -5.05 -0.02 -24.30 16 18 C -0.09 -3.74 7.09 -79.11 -0.56 -4.30 16 19 C -0.20 -8.53 8.98 -36.90 -0.33 -8.86 16 20 C -0.27 -11.62 10.97 -36.81 -0.40 -12.02 16 21 C -0.27 -11.34 10.97 -36.81 -0.40 -11.74 16 22 C -0.22 -9.19 11.11 -36.89 -0.41 -9.60 16 23 H 0.07 2.97 8.06 -52.49 -0.42 2.55 16 24 C -0.28 -11.26 7.52 -38.21 -0.29 -11.55 16 25 H 0.29 8.46 8.27 -40.82 -0.34 8.12 16 26 H 0.13 4.66 6.12 -52.49 -0.32 4.34 16 27 H 0.11 4.05 7.56 -52.49 -0.40 3.65 16 28 H 0.39 16.42 6.87 -40.82 -0.28 16.14 16 29 H 0.09 3.93 6.53 -52.49 -0.34 3.59 16 30 H 0.07 2.63 8.06 -52.49 -0.42 2.21 16 31 H 0.07 2.51 8.06 -52.49 -0.42 2.09 16 32 H 0.12 5.08 6.59 -52.49 -0.35 4.73 16 LS Contribution 289.20 15.07 4.36 4.36 Total: -2.00 -83.21 289.20 -8.75 -91.96 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -2.51 Total: 30.90 kcal Atomic # 6 Polarization: -65.50 SS G_CDS: -5.18 Total: -70.68 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.76 Total: -45.65 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.13 Total: -30.48 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.04 Total: 19.59 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -83.21 -8.75 -91.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171360033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.186 kcal (2) G-P(sol) polarization free energy of solvation -83.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds