Wall clock time and date at job start Mon Mar 30 2020 00:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29519 * 1 3 3 Si 1.86794 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47278 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47092 * 30.00200 * 3 2 1 6 6 H 1.48504 * 109.47019 * 150.00288 * 3 2 1 7 7 C 1.46532 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99693 * 189.58452 * 7 2 1 9 9 C 1.40409 * 120.00126 * 9.58060 * 7 2 1 10 10 C 1.41467 * 120.21947 * 27.63482 * 9 7 2 11 11 C 1.37762 * 120.00331 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.47628 * 0.25738 * 11 10 9 13 13 N 1.48032 * 119.77360 * 179.72106 * 12 11 10 14 14 O 1.31707 * 119.99778 * 354.69709 * 13 12 11 15 15 O 1.31700 * 120.00291 * 174.69834 * 13 12 11 16 16 C 1.40210 * 120.45266 * 359.44371 * 12 11 10 17 17 N 1.37713 * 120.01262 * 180.27533 * 16 12 11 18 18 C 1.32516 * 119.99630 * 138.13270 * 17 16 12 19 19 C 1.48493 * 126.82625 * 355.60229 * 18 17 16 20 20 C 1.33852 * 107.38857 * 179.87741 * 19 18 17 21 21 C 1.48673 * 109.43361 * 0.38800 * 20 19 18 22 22 C 1.33843 * 109.43599 * 359.74463 * 21 20 19 23 23 H 1.07997 * 126.30678 * 180.02562 * 22 21 20 24 24 C 1.39183 * 119.97871 * 0.57330 * 16 12 11 25 25 H 0.96993 * 119.99541 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.00106 * 359.97438 * 10 9 7 27 27 H 1.07991 * 119.76365 * 179.97438 * 11 10 9 28 28 H 0.96992 * 120.00163 * 318.13936 * 17 16 12 29 29 H 1.07998 * 126.30783 * 0.02562 * 19 18 17 30 30 H 1.07999 * 125.28415 * 180.12996 * 20 19 18 31 31 H 1.07989 * 125.28203 * 179.76827 * 21 20 19 32 32 H 1.07993 * 120.23822 * 179.73009 * 24 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 2.4767 2.0464 -1.4001 5 1 1.4266 2.6526 0.7001 6 1 3.5268 1.4401 0.7000 7 6 2.0278 -1.2690 -0.0006 8 1 3.0965 -1.2756 0.1552 9 6 1.3404 -2.4764 -0.2035 10 6 0.1422 -2.4959 -0.9553 11 6 -0.5283 -3.6832 -1.1521 12 6 -0.0416 -4.8616 -0.6144 13 7 -0.7779 -6.1275 -0.8303 14 8 -1.9445 -6.1147 -1.4416 15 8 -0.2667 -7.2665 -0.4111 16 6 1.1474 -4.8658 0.1288 17 7 1.6266 -6.0448 0.6550 18 6 2.9226 -6.3158 0.6014 19 6 3.9742 -5.5071 -0.0658 20 6 5.1412 -6.1351 0.1220 21 6 4.9136 -7.3782 0.9051 22 6 3.6111 -7.4920 1.1913 23 1 3.1464 -8.2918 1.7488 24 6 1.8400 -3.6771 0.3396 25 1 -0.4849 0.8400 0.0004 26 1 -0.2469 -1.5802 -1.3751 27 1 -1.4429 -3.6935 -1.7263 28 1 1.0155 -6.6767 1.0648 29 1 3.8253 -4.5813 -0.6017 30 1 6.0989 -5.7941 -0.2426 31 1 5.6802 -8.0801 1.1980 32 1 2.7539 -3.6748 0.9150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171360033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:11 Heat of formation + Delta-G solvation = 1.569692 kcal Electronic energy + Delta-G solvation = -19748.385012 eV Core-core repulsion = 16560.999001 eV Total energy + Delta-G solvation = -3187.386011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63563 -38.61799 -38.12103 -36.27405 -35.22615 -34.33091 -32.40886 -30.22196 -28.70321 -28.22548 -25.97507 -25.06311 -22.64041 -22.52527 -20.15532 -19.71920 -19.06975 -18.41097 -18.12562 -17.33530 -17.23555 -16.70260 -16.10202 -15.45944 -15.04816 -14.52867 -13.97890 -13.70292 -13.51284 -13.28163 -12.89409 -12.77733 -12.55566 -12.41234 -11.90513 -11.75138 -11.63652 -11.59843 -11.49497 -11.32875 -11.29961 -11.21628 -10.74071 -9.90130 -9.16918 -8.98481 -8.11782 -6.81676 -5.99327 -1.00603 0.86620 1.02483 1.23668 1.41818 1.57986 1.62186 2.18511 2.36664 2.87676 2.92260 3.18212 3.37901 4.10690 4.54662 4.60596 4.71280 4.90354 4.93999 4.99933 5.04233 5.13870 5.18603 5.29210 5.61569 5.65049 5.72592 5.85904 5.86979 6.19562 6.34136 6.39558 6.55400 6.60451 6.74333 6.84000 7.27930 7.61162 7.77154 7.82850 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.006705 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.655035 B = 4174.923404 C = 5835.216413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.024 3.976 3 Si 1.020 2.980 4 H -0.245 1.245 5 H -0.245 1.245 6 H -0.255 1.255 7 C -0.363 4.363 8 H 0.106 0.894 9 C 0.092 3.908 10 C -0.133 4.133 11 C -0.073 4.073 12 C -0.130 4.130 13 N 0.051 4.949 14 O -0.397 6.397 15 O -0.406 6.406 16 C 0.242 3.758 17 N -0.589 5.589 18 C -0.105 4.105 19 C -0.224 4.224 20 C -0.287 4.287 21 C -0.277 4.277 22 C -0.244 4.244 23 H 0.087 0.913 24 C -0.284 4.284 25 H 0.322 0.678 26 H 0.154 0.846 27 H 0.128 0.872 28 H 0.390 0.610 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 18.641 -0.133 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.205 4.205 3 Si 0.835 3.165 4 H -0.169 1.169 5 H -0.169 1.169 6 H -0.178 1.178 7 C -0.389 4.389 8 H 0.124 0.876 9 C 0.087 3.913 10 C -0.155 4.155 11 C -0.093 4.093 12 C -0.245 4.245 13 N 0.440 4.560 14 O -0.530 6.530 15 O -0.534 6.534 16 C 0.132 3.868 17 N -0.204 5.204 18 C -0.203 4.203 19 C -0.245 4.245 20 C -0.306 4.306 21 C -0.296 4.296 22 C -0.266 4.266 23 H 0.105 0.895 24 C -0.311 4.311 25 H 0.137 0.863 26 H 0.172 0.828 27 H 0.146 0.854 28 H 0.227 0.773 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.705 18.592 -0.162 18.606 hybrid contribution -0.458 -1.036 0.167 1.145 sum -1.163 17.556 0.004 17.594 Atomic orbital electron populations 1.69066 1.10556 1.34600 1.21409 1.28963 0.95830 1.05491 0.90176 0.84672 0.78865 0.72094 0.80917 1.16895 1.16860 1.17832 1.22027 0.96885 0.89879 1.30070 0.87554 1.18033 0.91949 0.92689 0.88642 1.21687 0.96529 0.95620 1.01664 1.20377 0.99885 0.89957 0.99090 1.20523 1.00926 0.82687 1.20335 1.49773 1.01311 1.03610 1.01333 1.95912 1.07762 1.96014 1.53291 1.95964 1.73338 1.18850 1.65279 1.17492 0.90638 0.87479 0.91205 1.39198 1.06553 1.17266 1.57342 1.20424 0.82766 1.01833 1.15286 1.21149 0.93361 1.00530 1.09440 1.21324 0.95096 1.00570 1.13638 1.21237 0.94443 1.00647 1.13264 1.21058 0.94991 0.98901 1.11601 0.89469 1.20961 1.06808 0.89914 1.13457 0.86346 0.82829 0.85431 0.77324 0.89748 0.88963 0.88552 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -41.96 10.85 23.21 0.25 -41.71 16 2 C 0.02 1.36 5.44 87.20 0.47 1.83 16 3 Si 1.02 43.55 29.65 68.60 2.03 45.59 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.25 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.36 -23.90 9.31 24.96 0.23 -23.66 16 8 H 0.11 6.83 7.95 -2.91 -0.02 6.81 16 9 C 0.09 6.80 5.60 -21.30 -0.12 6.68 16 10 C -0.13 -9.46 8.75 22.95 0.20 -9.26 16 11 C -0.07 -5.53 9.54 22.19 0.21 -5.31 16 12 C -0.13 -10.96 6.94 36.89 0.26 -10.70 16 13 N 0.05 4.48 4.99 -45.23 -0.23 4.25 16 14 O -0.40 -34.08 19.14 3.50 0.07 -34.02 16 15 O -0.41 -36.98 16.77 3.51 0.06 -36.92 16 16 C 0.24 20.67 6.06 38.93 0.24 20.91 16 17 N -0.59 -51.72 4.14 -169.88 -0.70 -52.42 16 18 C -0.11 -9.46 7.09 44.52 0.32 -9.15 16 19 C -0.22 -19.73 8.98 24.01 0.22 -19.52 16 20 C -0.29 -24.19 10.97 24.06 0.26 -23.92 16 21 C -0.28 -22.99 10.97 24.06 0.26 -22.73 16 22 C -0.24 -21.08 11.11 24.01 0.27 -20.81 16 23 H 0.09 7.11 8.06 -2.91 -0.02 7.09 16 24 C -0.28 -23.05 7.52 23.16 0.17 -22.88 16 25 H 0.32 15.80 8.27 -92.71 -0.77 15.04 16 26 H 0.15 10.10 6.12 -2.92 -0.02 10.09 16 27 H 0.13 9.15 7.56 -2.92 -0.02 9.13 16 28 H 0.39 34.14 6.87 -92.71 -0.64 33.50 16 29 H 0.08 7.38 6.53 -2.91 -0.02 7.36 16 30 H 0.09 7.12 8.06 -2.91 -0.02 7.10 16 31 H 0.10 7.26 8.06 -2.92 -0.02 7.23 16 32 H 0.10 8.70 6.59 -2.91 -0.02 8.68 16 Total: -2.00 -175.22 289.20 5.02 -170.20 By element: Atomic # 1 Polarization: 83.00 SS G_CDS: 0.55 Total: 83.54 kcal Atomic # 6 Polarization: -141.51 SS G_CDS: 2.99 Total: -138.52 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -0.68 Total: -89.87 kcal Atomic # 8 Polarization: -71.06 SS G_CDS: 0.13 Total: -70.94 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.59 kcal Total: -175.22 5.02 -170.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171360033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.768 kcal (2) G-P(sol) polarization free energy of solvation -175.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -170.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds