Wall clock time and date at job start Mon Mar 30 2020 01:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46864 * 239.99507 * 3 2 1 5 5 H 1.48494 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47111 * 120.00199 * 3 2 1 7 7 C 1.38819 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99433 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99786 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.67731 * 325.52543 * 10 9 7 12 12 C 1.53331 * 109.68285 * 204.99695 * 10 9 7 13 13 C 1.52729 * 108.36643 * 170.31145 * 12 10 9 14 14 C 1.50651 * 110.56423 * 51.10724 * 13 12 10 15 15 C 1.38972 * 117.65935 * 162.54127 * 14 13 12 16 16 C 1.38115 * 120.59616 * 179.74901 * 15 14 13 17 17 F 1.35109 * 120.13595 * 179.97438 * 16 15 14 18 18 C 1.38621 * 119.72810 * 359.95129 * 16 15 14 19 19 F 1.35101 * 120.16726 * 180.08666 * 18 16 15 20 20 C 1.38294 * 119.67463 * 0.10871 * 18 16 15 21 21 F 1.35100 * 119.74202 * 179.97438 * 20 18 16 22 22 C 1.37616 * 122.59178 * 342.38150 * 14 13 12 23 23 C 1.50652 * 122.55486 * 0.44554 * 22 14 13 24 24 H 0.97003 * 119.99844 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99645 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.68023 * 50.59400 * 12 10 9 27 27 H 1.08997 * 109.71373 * 290.04997 * 12 10 9 28 28 H 1.09002 * 109.25165 * 171.37603 * 13 12 10 29 29 H 1.08995 * 109.25206 * 290.83818 * 13 12 10 30 30 H 1.08004 * 119.70488 * 359.69109 * 15 14 13 31 31 H 1.08999 * 109.24892 * 222.14139 * 23 22 14 32 32 H 1.09000 * 109.21787 * 102.69124 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9748 -3.5519 -0.5786 12 6 1.1836 -4.7586 -0.6086 13 6 2.0488 -5.9999 -0.8166 14 6 2.7864 -6.3490 0.4498 15 6 3.3151 -7.6298 0.5562 16 6 4.0071 -8.0129 1.6884 17 9 4.5168 -9.2607 1.7822 18 6 4.1769 -7.1118 2.7280 19 9 4.8538 -7.4766 3.8389 20 6 3.6497 -5.8377 2.6226 21 9 3.8139 -4.9585 3.6352 22 6 2.9515 -5.4542 1.4822 23 6 2.3999 -4.0531 1.4366 24 1 -0.4850 0.8401 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 0.7861 -4.4233 -1.5666 27 1 0.3619 -4.9929 0.0681 28 1 1.4129 -6.8370 -1.1046 29 1 2.7698 -5.8064 -1.6107 30 1 3.1829 -8.3324 -0.2535 31 1 3.1430 -3.3612 1.8331 32 1 1.4989 -4.0021 2.0479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171507149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:41 Heat of formation + Delta-G solvation = -110.643807 kcal Electronic energy + Delta-G solvation = -20424.664218 eV Core-core repulsion = 16742.325696 eV Total energy + Delta-G solvation = -3682.338522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.74452 -49.15569 -48.42421 -39.87516 -36.33178 -33.50690 -32.13801 -30.77363 -29.20291 -27.65786 -24.31607 -23.31601 -22.62826 -21.93910 -19.57777 -18.12505 -17.86665 -17.32590 -16.90325 -16.75694 -15.94652 -15.48063 -15.11502 -14.93359 -14.64785 -14.48147 -14.24955 -13.97840 -13.59286 -13.15793 -12.93514 -12.78235 -12.41411 -12.27753 -11.68874 -11.38257 -11.05551 -10.87938 -10.75127 -10.47911 -10.36448 -9.99973 -9.71538 -9.00922 -8.83314 -8.61000 -7.07271 -5.83242 -3.13329 0.65855 0.72414 3.04992 3.34340 3.41204 3.46194 3.46575 4.07538 4.19474 4.33382 4.40400 4.55869 4.81095 5.17349 5.19159 5.32778 5.37876 5.46841 5.60466 5.68028 5.78770 5.82295 5.91616 6.02513 6.21476 6.24713 6.27195 6.52908 6.58176 6.77731 6.89691 7.64380 8.34772 9.46656 10.01360 10.36348 11.38929 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.029097 B = 0.004727 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.078223 B = 5921.616641 C = 6601.545053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.182 3.818 11 H 0.055 0.945 12 C -0.129 4.129 13 C -0.076 4.076 14 C -0.029 4.029 15 C -0.138 4.138 16 C 0.084 3.916 17 F -0.126 7.126 18 C 0.024 3.976 19 F -0.123 7.123 20 C 0.092 3.908 21 F -0.117 7.117 22 C -0.071 4.071 23 C -0.105 4.105 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.081 0.919 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -16.283 0.459 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.071 3.929 11 H 0.073 0.927 12 C -0.168 4.168 13 C -0.113 4.113 14 C -0.030 4.030 15 C -0.157 4.157 16 C 0.064 3.936 17 F -0.104 7.104 18 C 0.003 3.997 19 F -0.102 7.102 20 C 0.072 3.928 21 F -0.095 7.095 22 C -0.072 4.072 23 C -0.145 4.145 24 H 0.066 0.934 25 H 0.220 0.780 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.168 0.832 31 H 0.100 0.900 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.392 -16.124 0.531 17.010 hybrid contribution 0.557 0.693 0.736 1.154 sum 5.949 -15.431 1.267 16.587 Atomic orbital electron populations 1.69645 1.05139 1.25941 1.57179 1.24744 0.95492 0.97736 1.02585 0.86284 0.78586 0.83488 0.77931 1.21184 1.21645 1.21180 1.19202 0.91019 0.84036 1.43415 0.91129 1.42391 1.05838 0.99564 1.88224 1.20150 0.94959 0.86358 0.91458 0.92712 1.21910 0.98328 0.94226 1.02303 1.20530 0.98413 0.99280 0.93087 1.19504 0.96347 0.91142 0.96007 1.21149 0.99656 0.97791 0.97069 1.17152 1.00963 0.80404 0.95114 1.91533 1.85135 1.37394 1.96385 1.17476 1.02701 0.93549 0.85967 1.91527 1.77525 1.91715 1.49389 1.17509 1.01643 0.85909 0.87752 1.91553 1.93542 1.67066 1.57370 1.20073 0.97190 0.98944 0.91042 1.21480 1.01378 0.88410 1.03229 0.93355 0.78027 0.90404 0.91654 0.90059 0.89493 0.83236 0.90041 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.52 9.94 -15.06 -0.15 -6.67 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -16.88 5.13 -53.39 -0.27 -17.15 16 10 C 0.18 3.26 2.79 -67.89 -0.19 3.07 16 11 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 12 C -0.13 -1.82 5.46 -26.70 -0.15 -1.96 16 13 C -0.08 -0.81 5.67 -28.05 -0.16 -0.97 16 14 C -0.03 -0.35 5.74 -104.60 -0.60 -0.95 16 15 C -0.14 -1.45 9.58 -39.35 -0.38 -1.83 16 16 C 0.08 1.04 7.30 -39.49 -0.29 0.75 16 17 F -0.13 -1.57 17.19 2.25 0.04 -1.53 16 18 C 0.02 0.34 7.31 -39.42 -0.29 0.05 16 19 F -0.12 -1.83 17.10 2.25 0.04 -1.79 16 20 C 0.09 1.37 7.22 -39.24 -0.28 1.09 16 21 F -0.12 -1.90 16.37 2.25 0.04 -1.86 16 22 C -0.07 -1.01 5.74 -104.55 -0.60 -1.61 16 23 C -0.10 -1.78 4.94 -28.04 -0.14 -1.92 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.39 9.60 7.81 -40.82 -0.32 9.28 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.08 0.68 8.12 -51.93 -0.42 0.25 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.15 1.14 8.05 -52.48 -0.42 0.72 16 31 H 0.08 1.51 7.85 -51.93 -0.41 1.10 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 285.47 15.07 4.30 4.30 Total: -1.00 -28.75 285.47 -6.70 -35.45 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.22 Total: 3.57 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -3.32 Total: -11.30 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.45 Total: -43.65 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.11 Total: -5.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.75 -6.70 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171507149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.198 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds