Wall clock time and date at job start Mon Mar 30 2020 01:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46864 * 239.99507 * 3 2 1 5 5 H 1.48494 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47111 * 120.00199 * 3 2 1 7 7 C 1.38819 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99433 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99786 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.67731 * 325.52543 * 10 9 7 12 12 C 1.53331 * 109.68285 * 204.99695 * 10 9 7 13 13 C 1.52729 * 108.36643 * 170.31145 * 12 10 9 14 14 C 1.50651 * 110.56423 * 51.10724 * 13 12 10 15 15 C 1.38972 * 117.65935 * 162.54127 * 14 13 12 16 16 C 1.38115 * 120.59616 * 179.74901 * 15 14 13 17 17 F 1.35109 * 120.13595 * 179.97438 * 16 15 14 18 18 C 1.38621 * 119.72810 * 359.95129 * 16 15 14 19 19 F 1.35101 * 120.16726 * 180.08666 * 18 16 15 20 20 C 1.38294 * 119.67463 * 0.10871 * 18 16 15 21 21 F 1.35100 * 119.74202 * 179.97438 * 20 18 16 22 22 C 1.37616 * 122.59178 * 342.38150 * 14 13 12 23 23 C 1.50652 * 122.55486 * 0.44554 * 22 14 13 24 24 H 0.97003 * 119.99844 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99645 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.68023 * 50.59400 * 12 10 9 27 27 H 1.08997 * 109.71373 * 290.04997 * 12 10 9 28 28 H 1.09002 * 109.25165 * 171.37603 * 13 12 10 29 29 H 1.08995 * 109.25206 * 290.83818 * 13 12 10 30 30 H 1.08004 * 119.70488 * 359.69109 * 15 14 13 31 31 H 1.08999 * 109.24892 * 222.14139 * 23 22 14 32 32 H 1.09000 * 109.21787 * 102.69124 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9748 -3.5519 -0.5786 12 6 1.1836 -4.7586 -0.6086 13 6 2.0488 -5.9999 -0.8166 14 6 2.7864 -6.3490 0.4498 15 6 3.3151 -7.6298 0.5562 16 6 4.0071 -8.0129 1.6884 17 9 4.5168 -9.2607 1.7822 18 6 4.1769 -7.1118 2.7280 19 9 4.8538 -7.4766 3.8389 20 6 3.6497 -5.8377 2.6226 21 9 3.8139 -4.9585 3.6352 22 6 2.9515 -5.4542 1.4822 23 6 2.3999 -4.0531 1.4366 24 1 -0.4850 0.8401 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 0.7861 -4.4233 -1.5666 27 1 0.3619 -4.9929 0.0681 28 1 1.4129 -6.8370 -1.1046 29 1 2.7698 -5.8064 -1.6107 30 1 3.1829 -8.3324 -0.2535 31 1 3.1430 -3.3612 1.8331 32 1 1.4989 -4.0021 2.0479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171507149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:41 Heat of formation + Delta-G solvation = -126.418070 kcal Electronic energy + Delta-G solvation = -20425.348242 eV Core-core repulsion = 16742.325696 eV Total energy + Delta-G solvation = -3683.022545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.84303 -50.24586 -49.53691 -40.97107 -37.71457 -35.14290 -33.37201 -32.36887 -30.38669 -29.05590 -25.99434 -24.55842 -23.72486 -23.25084 -20.88358 -19.28570 -19.11707 -18.89721 -18.14995 -17.86393 -17.13381 -16.61999 -16.54506 -16.06583 -15.89159 -15.76059 -15.52165 -15.27235 -15.13805 -14.51365 -14.30374 -14.06497 -13.60527 -13.37986 -13.10764 -12.85077 -12.68601 -12.31185 -12.23386 -12.10441 -11.76067 -11.61715 -11.39815 -10.93243 -9.86703 -9.69234 -9.03113 -7.93780 -5.22163 -0.36785 -0.30578 1.48522 1.50279 1.56225 2.03928 2.30592 2.56616 3.03797 3.12660 3.28905 3.36917 3.43130 3.77745 3.96121 4.07661 4.24932 4.29961 4.46665 4.53984 4.61341 4.74297 4.76220 4.84145 5.00307 5.07673 5.10109 5.35452 5.43618 5.50386 5.54689 5.62813 6.28783 7.35789 8.11126 8.34001 9.29115 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.029097 B = 0.004727 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.078223 B = 5921.616641 C = 6601.545053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.052 0.948 12 C -0.122 4.122 13 C -0.068 4.068 14 C -0.020 4.020 15 C -0.110 4.110 16 C 0.090 3.910 17 F -0.123 7.123 18 C 0.011 3.989 19 F -0.132 7.132 20 C 0.075 3.925 21 F -0.134 7.134 22 C -0.083 4.083 23 C -0.092 4.092 24 H 0.251 0.749 25 H 0.376 0.624 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.195 0.805 31 H 0.054 0.946 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -18.584 -1.145 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.209 1.209 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.372 5.372 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.160 4.160 13 C -0.105 4.105 14 C -0.020 4.020 15 C -0.129 4.129 16 C 0.070 3.930 17 F -0.102 7.102 18 C -0.010 4.010 19 F -0.111 7.111 20 C 0.055 3.945 21 F -0.113 7.113 22 C -0.085 4.085 23 C -0.132 4.132 24 H 0.060 0.940 25 H 0.208 0.792 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.212 0.788 31 H 0.072 0.928 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.111 -18.471 -1.071 19.485 hybrid contribution 0.391 1.292 1.240 1.833 sum 6.502 -17.179 0.169 18.369 Atomic orbital electron populations 1.69787 1.06453 1.26066 1.59433 1.25468 0.96273 1.00795 1.03765 0.85330 0.77319 0.79747 0.78097 1.20223 1.22211 1.20929 1.19564 0.91349 0.85351 1.41110 0.90874 1.42588 1.05559 1.00786 1.88312 1.20411 0.95241 0.85620 0.92109 0.92977 1.21807 0.98205 0.94321 1.01703 1.20605 0.98658 0.98639 0.92608 1.19697 0.95714 0.91112 0.95513 1.21477 0.96990 0.97381 0.97029 1.17266 1.00704 0.80058 0.95003 1.91549 1.85111 1.37157 1.96375 1.17638 1.03204 0.93690 0.86439 1.91498 1.77807 1.91730 1.50074 1.17662 1.02832 0.86270 0.87775 1.91502 1.93838 1.67755 1.58191 1.19841 0.98451 0.97976 0.92262 1.21109 1.00082 0.90085 1.01933 0.94036 0.79223 0.90495 0.91707 0.85960 0.87565 0.78812 0.92758 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.84 13.06 21.65 0.28 -57.55 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 45.50 29.55 68.60 2.03 47.52 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.24 -13.01 9.94 84.04 0.84 -12.17 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.73 -34.93 5.13 -322.82 -1.66 -36.59 16 10 C 0.18 6.22 2.79 45.01 0.13 6.35 16 11 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 12 C -0.12 -3.16 5.46 30.61 0.17 -2.99 16 13 C -0.07 -1.13 5.67 29.74 0.17 -0.96 16 14 C -0.02 -0.40 5.74 -19.85 -0.11 -0.51 16 15 C -0.11 -1.77 9.58 22.42 0.21 -1.56 16 16 C 0.09 1.93 7.30 22.33 0.16 2.09 16 17 F -0.12 -2.66 17.19 44.97 0.77 -1.89 16 18 C 0.01 0.30 7.31 22.37 0.16 0.47 16 19 F -0.13 -3.88 17.10 44.97 0.77 -3.11 16 20 C 0.07 2.21 7.22 22.49 0.16 2.38 16 21 F -0.13 -4.54 16.37 44.97 0.74 -3.81 16 22 C -0.08 -2.31 5.74 -19.82 -0.11 -2.42 16 23 C -0.09 -3.18 4.94 29.74 0.15 -3.04 16 24 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 25 H 0.38 19.16 7.81 -92.71 -0.72 18.43 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 28 H 0.12 1.19 8.12 -2.39 -0.02 1.17 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.19 1.50 8.05 -2.91 -0.02 1.48 16 31 H 0.05 2.12 7.85 -2.39 -0.02 2.10 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -64.15 285.47 5.76 -58.39 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.45 Total: 12.89 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 2.39 Total: -15.86 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -1.37 Total: -94.14 kcal Atomic # 9 Polarization: -11.08 SS G_CDS: 2.28 Total: -8.80 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -64.15 5.76 -58.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171507149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.028 kcal (2) G-P(sol) polarization free energy of solvation -64.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds