Wall clock time and date at job start Mon Mar 30 2020 01:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86809 * 119.99890 * 2 1 4 4 H 1.48500 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.46922 * 300.00027 * 3 2 1 6 6 H 1.48501 * 109.46791 * 60.00297 * 3 2 1 7 7 C 1.38808 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00399 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99747 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.68111 * 35.52028 * 10 9 7 12 12 C 1.53326 * 109.67959 * 156.07128 * 10 9 7 13 13 C 1.52735 * 108.38454 * 189.57673 * 12 10 9 14 14 C 1.50653 * 110.52716 * 308.63434 * 13 12 10 15 15 C 1.38913 * 117.69744 * 197.28639 * 14 13 12 16 16 C 1.38123 * 120.60859 * 180.82794 * 15 14 13 17 17 F 1.35100 * 120.13985 * 180.23956 * 16 15 14 18 18 C 1.38633 * 119.72444 * 0.21586 * 16 15 14 19 19 F 1.35099 * 120.16089 * 179.88486 * 18 16 15 20 20 C 1.38292 * 119.67170 * 359.85971 * 18 16 15 21 21 F 1.35104 * 119.73729 * 180.10011 * 20 18 16 22 22 C 1.37666 * 122.54249 * 18.38266 * 14 13 12 23 23 C 1.50643 * 122.56031 * 358.58820 * 22 14 13 24 24 H 0.97005 * 120.00065 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99998 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.67716 * 309.29379 * 12 10 9 27 27 H 1.08998 * 109.68517 * 69.84965 * 12 10 9 28 28 H 1.09002 * 109.25267 * 69.13004 * 13 12 10 29 29 H 1.08999 * 109.24963 * 188.59735 * 13 12 10 30 30 H 1.08002 * 119.69870 * 1.11018 * 15 14 13 31 31 H 1.09003 * 109.24817 * 138.41105 * 23 22 14 32 32 H 1.08999 * 109.25555 * 257.83917 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9651 -3.5569 0.5958 12 6 1.1735 -4.7637 0.5850 13 6 2.0342 -6.0080 0.7942 14 6 2.7859 -6.3484 -0.4663 15 6 3.3172 -7.6272 -0.5758 16 6 4.0320 -7.9981 -1.6980 17 9 4.5404 -9.2458 -1.7967 18 6 4.2250 -7.0847 -2.7229 19 9 4.9247 -7.4373 -3.8235 20 6 3.6974 -5.8111 -2.6133 21 9 3.8830 -4.9206 -3.6122 22 6 2.9769 -5.4399 -1.4828 23 6 2.4238 -4.0395 -1.4331 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 0.7614 -4.4377 1.5400 27 1 0.3625 -4.9904 -0.1071 28 1 2.7433 -5.8230 1.6011 29 1 1.3931 -6.8471 1.0644 30 1 3.1662 -8.3395 0.2219 31 1 3.1730 -3.3437 -1.8109 32 1 1.5332 -3.9824 -2.0589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171507150.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:43 Heat of formation + Delta-G solvation = -110.811463 kcal Electronic energy + Delta-G solvation = -20426.984622 eV Core-core repulsion = 16744.638830 eV Total energy + Delta-G solvation = -3682.345792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.74588 -49.15681 -48.42526 -39.87569 -36.33600 -33.51093 -32.14047 -30.77567 -29.20699 -27.65703 -24.32637 -23.31608 -22.62973 -21.94097 -19.57747 -18.12650 -17.86959 -17.32145 -16.91229 -16.75683 -15.94934 -15.48138 -15.11913 -14.93371 -14.65260 -14.48111 -14.24935 -13.97670 -13.59493 -13.15620 -12.94111 -12.78322 -12.42499 -12.28041 -11.68986 -11.38497 -11.05911 -10.90603 -10.75732 -10.49261 -10.32238 -9.96661 -9.72658 -9.02304 -8.83597 -8.60932 -7.07297 -5.83833 -3.13845 0.65813 0.72213 3.04857 3.34219 3.40004 3.46361 3.48011 4.07467 4.19393 4.33200 4.40252 4.55548 4.80983 5.17055 5.18829 5.32635 5.37760 5.46698 5.60233 5.67974 5.78583 5.82142 5.91390 6.02126 6.21332 6.24466 6.26873 6.52561 6.58045 6.77439 6.89720 7.65109 8.34210 9.46303 10.00986 10.35934 11.38498 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.029025 B = 0.004739 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.467746 B = 5907.231339 C = 6597.193200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.721 5.721 10 C 0.182 3.818 11 H 0.054 0.946 12 C -0.129 4.129 13 C -0.076 4.076 14 C -0.030 4.030 15 C -0.138 4.138 16 C 0.084 3.916 17 F -0.126 7.126 18 C 0.024 3.976 19 F -0.123 7.123 20 C 0.092 3.908 21 F -0.117 7.117 22 C -0.070 4.070 23 C -0.105 4.105 24 H 0.256 0.744 25 H 0.386 0.614 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.081 0.919 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -16.340 -0.500 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.361 5.361 10 C 0.071 3.929 11 H 0.072 0.928 12 C -0.167 4.167 13 C -0.113 4.113 14 C -0.030 4.030 15 C -0.157 4.157 16 C 0.064 3.936 17 F -0.104 7.104 18 C 0.003 3.997 19 F -0.102 7.102 20 C 0.072 3.928 21 F -0.095 7.095 22 C -0.072 4.072 23 C -0.145 4.145 24 H 0.065 0.935 25 H 0.220 0.780 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.168 0.832 31 H 0.100 0.900 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.459 -16.191 -0.573 17.096 hybrid contribution 0.544 0.710 -0.731 1.155 sum 6.003 -15.481 -1.304 16.655 Atomic orbital electron populations 1.69663 1.05141 1.25706 1.57367 1.24743 0.95494 0.97747 1.02636 0.86143 0.78877 0.84094 0.77238 1.20484 1.21802 1.21794 1.19291 0.91082 0.84010 1.43117 0.91017 1.42409 1.05850 0.99589 1.88222 1.20149 0.94847 0.86359 0.91569 0.92774 1.21901 0.98330 0.94173 1.02337 1.20531 0.98316 0.99281 0.93173 1.19504 0.96363 0.91088 0.96059 1.21133 0.99415 0.97935 0.97172 1.17155 1.00821 0.80309 0.95350 1.91531 1.85239 1.37384 1.96289 1.17479 1.02168 0.93544 0.86490 1.91527 1.76355 1.92060 1.50211 1.17509 1.01475 0.85686 0.88154 1.91554 1.93318 1.66317 1.58344 1.20085 0.96992 0.98899 0.91258 1.21472 1.01376 0.88443 1.03196 0.93458 0.78029 0.90406 0.91634 0.89452 0.90088 0.83239 0.90043 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 2 C -0.01 -0.27 5.50 -17.44 -0.10 -0.37 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.47 9.94 -15.06 -0.15 -6.62 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.72 -16.87 5.14 -53.39 -0.27 -17.15 16 10 C 0.18 3.26 2.79 -67.90 -0.19 3.07 16 11 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 12 C -0.13 -1.81 5.46 -26.70 -0.15 -1.95 16 13 C -0.08 -0.81 5.67 -28.04 -0.16 -0.96 16 14 C -0.03 -0.35 5.74 -104.60 -0.60 -0.95 16 15 C -0.14 -1.45 9.58 -39.37 -0.38 -1.83 16 16 C 0.08 1.04 7.30 -39.48 -0.29 0.75 16 17 F -0.13 -1.57 17.19 2.25 0.04 -1.53 16 18 C 0.02 0.34 7.31 -39.42 -0.29 0.05 16 19 F -0.12 -1.82 17.10 2.25 0.04 -1.79 16 20 C 0.09 1.37 7.22 -39.24 -0.28 1.08 16 21 F -0.12 -1.90 16.37 2.25 0.04 -1.86 16 22 C -0.07 -1.01 5.74 -104.54 -0.60 -1.61 16 23 C -0.10 -1.77 4.93 -28.05 -0.14 -1.91 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.39 9.59 7.80 -40.82 -0.32 9.27 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 30 H 0.15 1.14 8.05 -52.49 -0.42 0.71 16 31 H 0.08 1.51 7.84 -51.93 -0.41 1.10 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 285.44 15.07 4.30 4.30 Total: -1.00 -28.81 285.44 -6.70 -35.50 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.22 Total: 3.45 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -3.32 Total: -11.26 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.45 Total: -43.64 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.11 Total: -5.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.81 -6.70 -35.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171507150.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.309 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds