Wall clock time and date at job start Mon Mar 30 2020 01:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.53000 * 109.46931 * 240.00093 * 2 1 3 5 5 C 1.50702 * 109.46889 * 175.00329 * 4 2 1 6 6 C 1.38449 * 120.02221 * 89.99979 * 5 4 2 7 7 F 1.35100 * 120.02307 * 359.97438 * 6 5 4 8 8 C 1.38446 * 119.96450 * 179.97438 * 6 5 4 9 9 C 1.38228 * 119.99721 * 359.97438 * 8 6 5 10 10 C 1.38197 * 120.04119 * 0.02562 * 9 8 6 11 11 C 1.38299 * 120.01353 * 269.71977 * 5 4 2 12 12 Cl 1.73598 * 120.00174 * 0.02562 * 11 5 4 13 13 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 14 14 C 1.46905 * 110.99870 * 274.99736 * 13 2 1 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 2 16 16 H 1.08000 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00103 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99864 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99815 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47527 * 89.99455 * 19 17 15 21 21 H 1.48497 * 109.47120 * 209.99666 * 19 17 15 22 22 H 1.48499 * 109.47065 * 329.99353 * 19 17 15 23 23 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 24 24 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 25 25 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46957 * 294.99682 * 4 2 1 27 27 H 1.08999 * 109.47080 * 55.00118 * 4 2 1 28 28 H 1.08001 * 120.00431 * 180.02562 * 8 6 5 29 29 H 1.08004 * 119.97550 * 180.02562 * 9 8 6 30 30 H 1.07997 * 119.97956 * 179.97438 * 10 9 8 31 31 H 1.00901 * 111.00067 * 38.94911 * 13 2 1 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 34 34 H 0.97004 * 119.99699 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3307 -1.5829 -0.7146 7 9 3.7545 -2.6231 -0.0733 8 6 5.7104 -1.4844 -0.7741 9 6 6.2996 -0.4202 -1.4308 10 6 5.5122 0.5460 -2.0278 11 6 4.1330 0.4465 -1.9734 12 17 3.1449 1.6573 -2.7293 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5885 -0.5215 3.5557 16 1 2.8388 -1.5693 3.4791 17 6 2.7329 0.1356 4.7592 18 7 3.1741 -0.5140 5.8142 19 14 2.3007 1.9480 4.8915 20 1 0.8715 2.0898 5.2690 21 1 3.1520 2.5856 5.9278 22 1 2.5349 2.6095 3.5828 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.7516 -1.7715 -1.2056 27 1 1.6054 -0.2617 -2.1370 28 1 6.3263 -2.2393 -0.3081 29 1 7.3759 -0.3439 -1.4773 30 1 5.9736 1.3772 -2.5402 31 1 1.4495 -1.4979 1.4100 32 1 2.7589 1.0462 2.1182 33 1 1.0871 0.6163 2.5525 34 1 3.2753 -0.0518 6.6611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172838967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:31 Heat of formation + Delta-G solvation = -55.481569 kcal Electronic energy + Delta-G solvation = -18803.343226 eV Core-core repulsion = 15675.193398 eV Total energy + Delta-G solvation = -3128.149828 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.67482 -40.25649 -38.17478 -37.39017 -35.09643 -33.51165 -31.46558 -31.25008 -28.25630 -27.49329 -23.73951 -23.57918 -22.79685 -21.56513 -18.92588 -18.58208 -17.67482 -16.97468 -16.60717 -16.38924 -15.89169 -15.68421 -15.54989 -14.93301 -14.72607 -14.49996 -14.34514 -13.90021 -13.65072 -13.40296 -13.28892 -12.96291 -12.62521 -12.59289 -12.29539 -12.22893 -12.05584 -11.82161 -11.78916 -11.62200 -11.44618 -10.82566 -9.69597 -9.53109 -9.04127 -8.30469 -6.33725 0.09969 0.23160 1.09224 1.31207 1.33443 1.44670 2.32207 2.54350 3.03485 3.46291 3.48183 3.68401 3.94190 3.99757 4.10691 4.30464 4.35204 4.44891 4.61841 4.67578 4.77024 4.86782 4.90137 4.95930 5.08319 5.16571 5.22640 5.28540 5.29931 5.31608 5.53724 5.87656 5.99412 6.58974 6.68828 6.79807 7.30939 8.86482 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.006428 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.672607 B = 4355.035404 C = 4705.458202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.085 3.915 3 H 0.063 0.937 4 C -0.065 4.065 5 C -0.107 4.107 6 C 0.114 3.886 7 F -0.138 7.138 8 C -0.165 4.165 9 C -0.080 4.080 10 C -0.126 4.126 11 C -0.024 4.024 12 Cl -0.057 7.057 13 N -0.676 5.676 14 C 0.183 3.817 15 C -0.521 4.521 16 H 0.036 0.964 17 C 0.009 3.991 18 N -0.947 5.947 19 Si 0.947 3.053 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.254 1.254 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.147 0.853 29 H 0.173 0.827 30 H 0.162 0.838 31 H 0.335 0.665 32 H 0.015 0.985 33 H -0.016 1.016 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 3.594 -20.240 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 H 0.081 0.919 4 C -0.103 4.103 5 C -0.109 4.109 6 C 0.095 3.905 7 F -0.117 7.117 8 C -0.184 4.184 9 C -0.098 4.098 10 C -0.144 4.144 11 C -0.051 4.051 12 Cl -0.028 7.028 13 N -0.306 5.306 14 C 0.054 3.946 15 C -0.560 4.560 16 H 0.054 0.946 17 C -0.188 4.188 18 N -0.588 5.588 19 Si 0.771 3.229 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.178 1.178 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.165 0.835 29 H 0.190 0.810 30 H 0.179 0.821 31 H 0.153 0.847 32 H 0.033 0.967 33 H 0.002 0.998 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.532 3.764 -20.269 20.771 hybrid contribution -1.230 0.361 1.127 1.707 sum 1.303 4.125 -19.142 19.625 Atomic orbital electron populations 1.22412 0.95733 1.02645 1.02383 1.21553 0.93524 0.97213 0.90231 0.91912 1.20608 0.89403 1.02102 0.98156 1.19696 0.97499 0.94302 0.99381 1.17601 0.91590 0.86350 0.94979 1.91486 1.85336 1.55444 1.79389 1.21558 0.92549 1.01866 1.02378 1.21266 1.01835 0.91705 0.94955 1.21369 0.90637 1.01075 1.01369 1.20696 0.92386 0.91750 1.00222 1.98346 1.70481 1.53972 1.80025 1.60448 1.56872 1.09512 1.03811 1.19662 0.93680 0.92508 0.88757 1.21318 1.43290 0.97368 0.93977 0.94611 1.25834 0.94690 1.03172 0.95125 1.70056 1.48297 1.38780 1.01641 0.85716 0.78789 0.79704 0.78729 1.19092 1.20535 1.17753 0.93729 0.90158 0.91754 0.90679 0.88328 0.83506 0.80975 0.82084 0.84742 0.96700 0.99821 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 9.16 71.98 0.66 -4.08 16 2 C 0.09 2.77 2.58 44.92 0.12 2.88 16 3 H 0.06 2.18 7.80 -2.39 -0.02 2.16 16 4 C -0.06 -1.82 4.46 29.85 0.13 -1.69 16 5 C -0.11 -3.20 4.96 -19.80 -0.10 -3.29 16 6 C 0.11 3.71 6.89 22.37 0.15 3.86 16 7 F -0.14 -5.13 15.91 44.97 0.72 -4.41 16 8 C -0.16 -4.41 10.03 22.32 0.22 -4.18 16 9 C -0.08 -1.66 10.04 22.26 0.22 -1.44 16 10 C -0.13 -2.70 9.83 22.30 0.22 -2.48 16 11 C -0.02 -0.61 6.31 22.32 0.14 -0.47 16 12 Cl -0.06 -1.30 27.29 -2.72 -0.07 -1.37 16 13 N -0.68 -28.09 5.08 -495.56 -2.52 -30.61 16 14 C 0.18 8.96 4.31 85.55 0.37 9.33 16 15 C -0.52 -30.97 9.87 25.60 0.25 -30.71 16 16 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 17 C 0.01 0.55 5.47 84.66 0.46 1.01 16 18 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 19 Si 0.95 45.17 27.47 68.60 1.88 47.06 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 23 H 0.04 1.34 7.45 -2.38 -0.02 1.32 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.65 8.13 -2.39 -0.02 1.64 16 26 H 0.07 2.12 7.64 -2.39 -0.02 2.10 16 27 H 0.10 2.32 6.89 -2.39 -0.02 2.30 16 28 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.33 13.97 8.46 -89.69 -0.76 13.21 16 32 H 0.01 0.76 7.11 -2.39 -0.02 0.74 16 33 H -0.02 -0.76 6.86 -2.39 -0.02 -0.77 16 34 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -68.52 303.41 3.46 -65.06 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.30 Total: 15.47 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 2.86 Total: -31.27 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -2.22 Total: -90.54 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.72 Total: -4.41 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.37 kcal Total: -68.52 3.46 -65.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172838967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.581 kcal (2) G-P(sol) polarization free energy of solvation -68.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds