Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 C 1.53003 * 109.46968 * 120.00264 * 2 1 3 5 5 C 1.50696 * 109.47176 * 184.99632 * 4 2 1 6 6 C 1.38458 * 120.02115 * 269.72853 * 5 4 2 7 7 F 1.35097 * 120.01811 * 359.96919 * 6 5 4 8 8 C 1.38451 * 119.96177 * 179.74245 * 6 5 4 9 9 C 1.38226 * 119.99788 * 0.53407 * 8 6 5 10 10 C 1.38201 * 120.04042 * 359.71379 * 9 8 6 11 11 C 1.38291 * 120.01910 * 89.99969 * 5 4 2 12 12 Cl 1.73602 * 119.99973 * 359.97438 * 11 5 4 13 13 N 1.46903 * 109.47070 * 240.00050 * 2 1 3 14 14 C 1.46893 * 110.99924 * 84.99937 * 13 2 1 15 15 C 1.50706 * 109.47176 * 179.97438 * 14 13 2 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47288 * 59.99994 * 19 17 15 21 21 H 1.48503 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46819 * 299.99648 * 19 17 15 23 23 H 1.09005 * 109.46884 * 59.99705 * 1 2 3 24 24 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46732 * 300.00283 * 1 2 3 26 26 H 1.09005 * 109.46914 * 305.00021 * 4 2 1 27 27 H 1.09002 * 109.47042 * 64.99914 * 4 2 1 28 28 H 1.07997 * 120.00125 * 180.24882 * 8 6 5 29 29 H 1.08001 * 119.97766 * 179.70663 * 9 8 6 30 30 H 1.08001 * 119.98306 * 180.02562 * 10 9 8 31 31 H 1.00904 * 110.99923 * 321.05019 * 13 2 1 32 32 H 1.09001 * 109.46739 * 60.00281 * 14 13 2 33 33 H 1.09000 * 109.47767 * 300.00540 * 14 13 2 34 34 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 6 4.3307 -1.5861 0.7194 7 9 3.7544 -2.6296 0.0838 8 6 5.7104 -1.4845 0.7739 9 6 6.2996 -0.4199 1.4298 10 6 5.5123 0.5466 2.0264 11 6 4.1331 0.4493 1.9684 12 17 3.1450 1.6640 2.7182 13 7 2.0197 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3468 15 6 2.5885 -0.5215 -3.5558 16 1 2.8381 -1.5695 -3.4793 17 6 2.7329 0.1355 -4.7592 18 7 2.4294 1.4119 -4.8520 19 14 3.3594 -0.7870 -6.2578 20 1 2.4377 -1.9086 -6.5698 21 1 3.4230 0.1381 -7.4177 22 1 4.7153 -1.3239 -5.9773 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6053 -0.2618 2.1370 27 1 1.7516 -1.7716 1.2055 28 1 6.3263 -2.2393 0.3079 29 1 7.3759 -0.3435 1.4762 30 1 5.9736 1.3782 2.5384 31 1 1.4495 -1.4979 -1.4101 32 1 2.7589 1.0461 -2.1181 33 1 1.0871 0.6164 -2.5525 34 1 2.5306 1.8740 -5.6989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172838968.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -41.037551 kcal Electronic energy + Delta-G solvation = -18750.285526 eV Core-core repulsion = 15622.762038 eV Total energy + Delta-G solvation = -3127.523488 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.40870 -39.13748 -36.57374 -36.32634 -33.17287 -31.81296 -30.20874 -29.63231 -26.32116 -25.84428 -22.63221 -22.17269 -21.39938 -20.07447 -17.48312 -16.49893 -16.35749 -15.70156 -15.18548 -14.79904 -14.53737 -14.09290 -14.04811 -13.51249 -13.34377 -13.08361 -12.78351 -12.23249 -12.01948 -11.86323 -11.67459 -11.29515 -11.22875 -11.22189 -11.02976 -10.69546 -10.62226 -10.55185 -10.35629 -9.82141 -9.16451 -8.58801 -8.44280 -8.38947 -7.19754 -5.98994 -4.00300 1.18678 1.32347 2.17641 3.35458 3.39040 3.42455 3.62276 4.46030 4.57264 4.78669 4.91942 5.01116 5.27675 5.34655 5.36792 5.46566 5.56143 5.78595 5.81626 5.88669 6.06848 6.12055 6.21251 6.26563 6.33764 6.37820 6.51912 6.63859 6.96957 7.32337 7.50000 7.83662 8.18369 8.46805 8.68381 9.09286 9.64224 11.12032 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.006049 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.814141 B = 4628.031889 C = 5129.467441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.087 3.913 3 H 0.073 0.927 4 C -0.073 4.073 5 C -0.086 4.086 6 C 0.149 3.851 7 F -0.119 7.119 8 C -0.155 4.155 9 C -0.089 4.089 10 C -0.129 4.129 11 C -0.012 4.012 12 Cl -0.066 7.066 13 N -0.681 5.681 14 C 0.198 3.802 15 C -0.511 4.511 16 H 0.061 0.939 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.329 0.671 32 H 0.024 0.976 33 H -0.014 1.014 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 -2.893 16.014 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.024 4.024 3 H 0.092 0.908 4 C -0.111 4.111 5 C -0.087 4.087 6 C 0.129 3.871 7 F -0.097 7.097 8 C -0.174 4.174 9 C -0.107 4.107 10 C -0.148 4.148 11 C -0.039 4.039 12 Cl -0.037 7.037 13 N -0.310 5.310 14 C 0.072 3.928 15 C -0.549 4.549 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.042 0.958 33 H 0.004 0.996 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.148 -2.582 16.073 16.799 hybrid contribution -0.753 -0.245 -1.298 1.520 sum 3.395 -2.827 14.775 15.422 Atomic orbital electron populations 1.22473 0.97794 1.01547 1.01785 1.21439 0.91832 0.98022 0.91083 0.90844 1.20702 0.89241 1.02226 0.98933 1.19590 0.97338 0.93489 0.98309 1.17158 0.90305 0.85865 0.93782 1.91531 1.84922 1.54256 1.78998 1.21224 0.93183 1.00746 1.02214 1.20807 0.99948 0.93188 0.96806 1.20949 0.91260 1.00442 1.02169 1.20501 0.91407 0.91763 1.00211 1.98350 1.70558 1.54306 1.80536 1.60735 1.55310 1.10302 1.04695 1.19515 0.95060 0.91678 0.86583 1.21157 1.43313 0.96850 0.93628 0.92098 1.24973 0.95743 0.94900 0.98929 1.69961 1.49017 1.08964 1.25890 0.86581 0.79469 0.79441 0.82012 1.20308 1.21394 1.20231 0.92170 0.92871 0.93071 0.90534 0.90650 0.84569 0.84678 0.84921 0.85384 0.95782 0.99642 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.16 37.16 0.34 -2.46 16 2 C 0.09 1.56 2.58 -67.71 -0.17 1.38 16 3 H 0.07 1.44 7.80 -51.93 -0.40 1.03 16 4 C -0.07 -1.11 4.46 -27.88 -0.12 -1.24 16 5 C -0.09 -1.35 4.96 -104.52 -0.52 -1.87 16 6 C 0.15 2.42 6.90 -39.42 -0.27 2.15 16 7 F -0.12 -2.11 15.94 2.25 0.04 -2.07 16 8 C -0.15 -2.15 10.03 -39.51 -0.40 -2.54 16 9 C -0.09 -1.07 10.04 -39.60 -0.40 -1.47 16 10 C -0.13 -1.63 9.83 -39.54 -0.39 -2.02 16 11 C -0.01 -0.17 6.31 -39.51 -0.25 -0.42 16 12 Cl -0.07 -0.88 27.30 -51.86 -1.42 -2.29 16 13 N -0.68 -14.55 5.13 -107.99 -0.55 -15.11 16 14 C 0.20 5.24 5.24 -4.98 -0.03 5.21 16 15 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 16 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 19 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H 0.06 1.06 7.45 -51.93 -0.39 0.67 16 24 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.03 6.90 -51.93 -0.36 0.67 16 27 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 28 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.33 6.89 8.46 -39.29 -0.33 6.56 16 32 H 0.02 0.70 8.06 -51.93 -0.42 0.28 16 33 H -0.01 -0.40 7.44 -51.93 -0.39 -0.78 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -30.53 307.09 -8.56 -39.08 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.34 Total: 1.93 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.62 Total: -16.73 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.18 Total: -41.60 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.42 Total: -2.29 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.53 -8.56 -39.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172838968.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.954 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds