Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 C 1.53003 * 109.46968 * 120.00264 * 2 1 3 5 5 C 1.50696 * 109.47176 * 184.99632 * 4 2 1 6 6 C 1.38458 * 120.02115 * 269.72853 * 5 4 2 7 7 F 1.35097 * 120.01811 * 359.96919 * 6 5 4 8 8 C 1.38451 * 119.96177 * 179.74245 * 6 5 4 9 9 C 1.38226 * 119.99788 * 0.53407 * 8 6 5 10 10 C 1.38201 * 120.04042 * 359.71379 * 9 8 6 11 11 C 1.38291 * 120.01910 * 89.99969 * 5 4 2 12 12 Cl 1.73602 * 119.99973 * 359.97438 * 11 5 4 13 13 N 1.46903 * 109.47070 * 240.00050 * 2 1 3 14 14 C 1.46893 * 110.99924 * 84.99937 * 13 2 1 15 15 C 1.50706 * 109.47176 * 179.97438 * 14 13 2 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47288 * 59.99994 * 19 17 15 21 21 H 1.48503 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46819 * 299.99648 * 19 17 15 23 23 H 1.09005 * 109.46884 * 59.99705 * 1 2 3 24 24 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46732 * 300.00283 * 1 2 3 26 26 H 1.09005 * 109.46914 * 305.00021 * 4 2 1 27 27 H 1.09002 * 109.47042 * 64.99914 * 4 2 1 28 28 H 1.07997 * 120.00125 * 180.24882 * 8 6 5 29 29 H 1.08001 * 119.97766 * 179.70663 * 9 8 6 30 30 H 1.08001 * 119.98306 * 180.02562 * 10 9 8 31 31 H 1.00904 * 110.99923 * 321.05019 * 13 2 1 32 32 H 1.09001 * 109.46739 * 60.00281 * 14 13 2 33 33 H 1.09000 * 109.47767 * 300.00540 * 14 13 2 34 34 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 6 4.3307 -1.5861 0.7194 7 9 3.7544 -2.6296 0.0838 8 6 5.7104 -1.4845 0.7739 9 6 6.2996 -0.4199 1.4298 10 6 5.5123 0.5466 2.0264 11 6 4.1331 0.4493 1.9684 12 17 3.1450 1.6640 2.7182 13 7 2.0197 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3468 15 6 2.5885 -0.5215 -3.5558 16 1 2.8381 -1.5695 -3.4793 17 6 2.7329 0.1355 -4.7592 18 7 2.4294 1.4119 -4.8520 19 14 3.3594 -0.7870 -6.2578 20 1 2.4377 -1.9086 -6.5698 21 1 3.4230 0.1381 -7.4177 22 1 4.7153 -1.3239 -5.9773 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6053 -0.2618 2.1370 27 1 1.7516 -1.7716 1.2055 28 1 6.3263 -2.2393 0.3079 29 1 7.3759 -0.3435 1.4762 30 1 5.9736 1.3782 2.5384 31 1 1.4495 -1.4979 -1.4101 32 1 2.7589 1.0461 -2.1181 33 1 1.0871 0.6164 -2.5525 34 1 2.5306 1.8740 -5.6989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172838968.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -58.580083 kcal Electronic energy + Delta-G solvation = -18751.046227 eV Core-core repulsion = 15622.762038 eV Total energy + Delta-G solvation = -3128.284189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.66228 -40.24213 -38.11687 -37.38418 -35.14374 -33.36624 -31.30666 -31.18124 -27.90984 -27.48770 -23.98023 -23.71953 -22.85893 -21.51664 -18.67012 -18.43279 -17.66759 -16.92721 -16.66875 -16.42706 -15.76073 -15.69441 -15.55470 -14.99886 -14.62394 -14.34116 -14.18019 -13.77402 -13.55648 -13.27231 -13.21230 -12.95594 -12.68465 -12.57846 -12.36193 -12.28793 -12.16726 -11.90584 -11.81060 -11.61897 -11.27629 -10.65412 -9.68430 -9.52042 -8.99348 -8.21290 -6.31902 0.11104 0.23990 1.10444 1.39321 1.42775 1.50809 2.39689 2.55252 3.11625 3.48366 3.54007 3.70221 3.96445 4.00680 4.11736 4.31257 4.36086 4.45766 4.62904 4.67277 4.84031 4.91661 4.97538 5.10627 5.11620 5.19954 5.28367 5.30335 5.32025 5.38267 5.63625 5.89057 6.05349 6.50084 6.76705 6.93252 7.38810 8.89899 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.006049 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.814141 B = 4628.031889 C = 5129.467441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.087 3.913 3 H 0.052 0.948 4 C -0.063 4.063 5 C -0.108 4.108 6 C 0.116 3.884 7 F -0.136 7.136 8 C -0.162 4.162 9 C -0.080 4.080 10 C -0.128 4.128 11 C -0.025 4.025 12 Cl -0.061 7.061 13 N -0.675 5.675 14 C 0.219 3.781 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.174 0.826 30 H 0.160 0.840 31 H 0.333 0.667 32 H -0.010 1.010 33 H -0.040 1.040 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -3.490 16.605 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 H 0.070 0.930 4 C -0.101 4.101 5 C -0.110 4.110 6 C 0.096 3.904 7 F -0.114 7.114 8 C -0.181 4.181 9 C -0.098 4.098 10 C -0.146 4.146 11 C -0.052 4.052 12 Cl -0.032 7.032 13 N -0.305 5.305 14 C 0.091 3.909 15 C -0.570 4.570 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.194 1.194 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.191 0.809 30 H 0.177 0.823 31 H 0.150 0.850 32 H 0.008 0.992 33 H -0.022 1.022 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.285 -3.190 16.693 17.798 hybrid contribution -1.076 0.000 -1.391 1.758 sum 4.210 -3.190 15.302 16.188 Atomic orbital electron populations 1.22380 0.96057 1.02551 1.01893 1.21483 0.93277 0.96901 0.90653 0.92991 1.20585 0.89513 1.02083 0.97873 1.19707 0.97474 0.94316 0.99455 1.17560 0.91566 0.86182 0.95053 1.91477 1.85329 1.55020 1.79586 1.21559 0.92438 1.01810 1.02298 1.21276 1.01825 0.91760 0.94952 1.21372 0.90608 1.01160 1.01502 1.20722 0.92436 0.91644 1.00408 1.98346 1.70595 1.53884 1.80334 1.60603 1.56244 1.09632 1.04038 1.19074 0.92515 0.91263 0.88011 1.21496 1.43653 0.97035 0.94766 0.92099 1.25913 0.95664 0.95748 1.02254 1.70094 1.49835 1.10625 1.26877 0.85444 0.79117 0.78271 0.77823 1.19162 1.20726 1.19428 0.94580 0.91409 0.90377 0.88638 0.90363 0.83035 0.80870 0.82258 0.85018 0.99210 1.02215 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.32 9.16 71.98 0.66 -4.66 16 2 C 0.09 3.15 2.58 44.92 0.12 3.27 16 3 H 0.05 2.09 7.80 -2.39 -0.02 2.08 16 4 C -0.06 -1.88 4.46 29.85 0.13 -1.75 16 5 C -0.11 -3.37 4.96 -19.80 -0.10 -3.46 16 6 C 0.12 3.76 6.90 22.37 0.15 3.91 16 7 F -0.14 -4.86 15.94 44.97 0.72 -4.15 16 8 C -0.16 -4.28 10.03 22.32 0.22 -4.06 16 9 C -0.08 -1.71 10.04 22.26 0.22 -1.48 16 10 C -0.13 -2.92 9.83 22.30 0.22 -2.70 16 11 C -0.03 -0.70 6.31 22.32 0.14 -0.56 16 12 Cl -0.06 -1.53 27.30 -2.72 -0.07 -1.61 16 13 N -0.68 -29.60 5.13 -495.57 -2.54 -32.14 16 14 C 0.22 12.04 5.24 85.56 0.45 12.49 16 15 C -0.53 -31.03 9.32 25.60 0.24 -30.79 16 16 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 19 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 H 0.04 1.29 7.45 -2.38 -0.02 1.27 16 24 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.10 2.46 6.90 -2.38 -0.02 2.44 16 27 H 0.08 2.28 7.63 -2.39 -0.02 2.27 16 28 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.33 14.16 8.46 -89.69 -0.76 13.41 16 32 H -0.01 -0.62 8.06 -2.39 -0.02 -0.64 16 33 H -0.04 -2.34 7.44 -2.39 -0.02 -2.36 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -66.89 307.09 3.69 -63.20 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.35 Total: 13.92 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 2.92 Total: -29.21 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -2.25 Total: -89.39 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.72 Total: -4.15 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.61 kcal Total: -66.89 3.69 -63.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172838968.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.622 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds