Wall clock time and date at job start Mon Mar 30 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47378 * 2 1 4 4 C 1.53003 * 109.47033 * 239.99780 * 2 1 3 5 5 C 1.50699 * 109.46871 * 64.72319 * 4 2 1 6 6 C 1.38469 * 120.01922 * 266.09752 * 5 4 2 7 7 F 1.35095 * 120.01552 * 0.02562 * 6 5 4 8 8 C 1.38441 * 119.96010 * 179.76381 * 6 5 4 9 9 C 1.38233 * 120.00265 * 0.49347 * 8 6 5 10 10 C 1.38203 * 120.03638 * 359.76219 * 9 8 6 11 11 C 1.38296 * 120.02098 * 86.37492 * 5 4 2 12 12 Cl 1.73596 * 119.99877 * 0.02562 * 11 5 4 13 13 N 1.46497 * 109.47268 * 120.00352 * 2 1 3 14 14 C 1.46497 * 120.00553 * 60.37091 * 13 2 1 15 15 C 1.36943 * 119.99987 * 240.37502 * 13 2 1 16 16 H 1.08002 * 119.99750 * 23.82159 * 15 13 2 17 17 C 1.38807 * 120.00378 * 203.82116 * 15 13 2 18 18 N 1.31620 * 119.99838 * 11.94890 * 17 15 13 19 19 Si 1.86803 * 120.00131 * 191.95562 * 17 15 13 20 20 H 1.48500 * 109.46822 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46994 * 119.99750 * 19 17 15 22 22 H 1.48492 * 109.46878 * 239.99901 * 19 17 15 23 23 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46938 * 300.00262 * 1 2 3 25 25 H 1.09001 * 109.46939 * 60.00286 * 1 2 3 26 26 H 1.09001 * 109.47149 * 184.72099 * 4 2 1 27 27 H 1.08998 * 109.47287 * 304.72345 * 4 2 1 28 28 H 1.08003 * 119.99828 * 180.23086 * 8 6 5 29 29 H 1.07997 * 119.97817 * 179.74232 * 9 8 6 30 30 H 1.08001 * 119.98143 * 179.97438 * 10 9 8 31 31 H 1.09007 * 109.46859 * 87.07923 * 14 13 2 32 32 H 1.08992 * 109.47505 * 207.07945 * 14 13 2 33 33 H 1.09000 * 109.47136 * 327.08763 * 14 13 2 34 34 H 0.97003 * 119.99680 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6354 0.0534 -2.4769 6 6 0.4662 -0.2687 -3.1452 7 9 -0.3126 -1.2773 -2.6968 8 6 0.0932 0.4470 -4.2701 9 6 0.8930 1.4759 -4.7314 10 6 2.0626 1.7939 -4.0674 11 6 2.4345 1.0827 -2.9400 12 17 3.9045 1.4823 -2.1075 13 7 2.0183 -0.6907 1.1961 14 6 1.6713 -2.0956 1.4239 15 6 2.7993 -0.0230 2.1014 16 1 2.7500 1.0540 2.1665 17 6 3.6543 -0.7302 2.9354 18 7 3.8935 -2.0039 2.7054 19 14 4.4652 0.1256 4.3844 20 1 4.0357 1.5466 4.4236 21 1 4.0637 -0.5483 5.6453 22 1 5.9412 0.0590 4.2358 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.1267 -0.7952 -1.2080 27 1 1.6092 -1.7216 -1.2925 28 1 -0.8205 0.1988 -4.7896 29 1 0.6037 2.0312 -5.6113 30 1 2.6869 2.5976 -4.4288 31 1 2.3990 -2.7352 0.9244 32 1 1.6792 -2.3030 2.4938 33 1 0.6774 -2.2940 1.0226 34 1 4.4912 -2.4980 3.2881 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172859102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:35 Heat of formation + Delta-G solvation = -10.575809 kcal Electronic energy + Delta-G solvation = -18996.442998 eV Core-core repulsion = 15870.240430 eV Total energy + Delta-G solvation = -3126.202568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.77748 -39.25690 -36.49274 -36.21103 -33.27640 -31.13654 -30.36075 -28.81797 -26.28501 -25.93076 -23.35840 -22.66043 -21.58434 -18.95483 -17.62375 -16.86245 -16.51434 -15.75681 -15.62152 -14.94118 -14.61305 -13.93347 -13.72890 -13.39395 -13.30769 -12.92234 -12.57963 -12.34436 -12.01920 -11.73305 -11.41448 -11.25554 -11.16893 -10.88979 -10.70990 -10.61996 -10.37070 -10.28735 -10.15230 -9.77988 -9.68254 -8.67158 -8.63393 -8.44678 -6.68122 -5.70079 -3.13033 1.03114 1.13294 2.27606 3.39715 3.46268 3.47571 3.49456 4.31791 4.51166 4.72058 4.85094 4.92658 5.20944 5.44461 5.47484 5.68024 5.71061 5.92611 5.94638 6.09026 6.15390 6.19275 6.24011 6.45289 6.49568 6.63984 6.78489 6.89386 7.04666 7.08050 7.46033 7.75512 7.85975 8.46289 9.28579 9.91664 10.42053 11.36139 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.006241 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.344847 B = 4485.350096 C = 5260.694465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 H 0.064 0.936 4 C -0.103 4.103 5 C -0.087 4.087 6 C 0.109 3.891 7 F -0.130 7.130 8 C -0.152 4.152 9 C -0.098 4.098 10 C -0.121 4.121 11 C -0.015 4.015 12 Cl -0.045 7.045 13 N -0.590 5.590 14 C 0.161 3.839 15 C -0.248 4.248 16 H 0.068 0.932 17 C 0.001 3.999 18 N -0.906 5.906 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.018 0.982 32 H 0.054 0.946 33 H -0.003 1.003 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 5.819 -14.761 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.075 3.925 3 H 0.082 0.918 4 C -0.142 4.142 5 C -0.090 4.090 6 C 0.089 3.911 7 F -0.108 7.108 8 C -0.171 4.171 9 C -0.116 4.116 10 C -0.140 4.140 11 C -0.042 4.042 12 Cl -0.016 7.016 13 N -0.311 5.311 14 C 0.016 3.984 15 C -0.378 4.378 16 H 0.086 0.914 17 C -0.197 4.197 18 N -0.551 5.551 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.016 0.984 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.621 5.682 -14.507 16.563 hybrid contribution 0.518 0.153 0.851 1.008 sum -5.103 5.835 -13.656 15.702 Atomic orbital electron populations 1.22309 0.98587 1.01204 0.99936 1.20299 0.91638 0.95648 0.84919 0.91759 1.21434 1.03139 0.98632 0.91000 1.20097 0.93395 0.97179 0.98295 1.17335 0.90317 0.88600 0.94860 1.91512 1.73091 1.57488 1.88733 1.21171 1.01768 0.97557 0.96644 1.20809 0.93855 0.97025 0.99920 1.21068 0.97819 1.00418 0.94722 1.20647 0.90714 0.97501 0.95376 1.98415 1.32924 1.92692 1.77529 1.43988 1.58006 1.09501 1.19591 1.20760 0.92997 0.84305 1.00331 1.19282 1.15586 0.91388 1.11533 0.91443 1.25034 0.97711 0.96330 1.00619 1.70081 1.38556 1.08038 1.38461 0.86212 0.78960 0.78926 0.82659 1.20309 1.21648 1.21777 0.92952 0.92943 0.94322 0.89450 0.91037 0.84631 0.84606 0.84697 0.96378 0.92687 0.98446 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.23 37.16 0.31 -2.74 16 2 C 0.18 3.89 2.79 -67.93 -0.19 3.70 16 3 H 0.06 1.40 7.86 -51.93 -0.41 0.99 16 4 C -0.10 -1.98 4.15 -27.88 -0.12 -2.10 16 5 C -0.09 -1.41 4.60 -104.52 -0.48 -1.89 16 6 C 0.11 1.59 5.99 -39.42 -0.24 1.35 16 7 F -0.13 -2.04 15.59 2.25 0.04 -2.00 16 8 C -0.15 -1.74 10.03 -39.51 -0.40 -2.13 16 9 C -0.10 -0.98 10.04 -39.60 -0.40 -1.38 16 10 C -0.12 -1.40 9.83 -39.54 -0.39 -1.79 16 11 C -0.02 -0.22 6.31 -39.51 -0.25 -0.47 16 12 Cl -0.04 -0.72 27.36 -51.86 -1.42 -2.14 16 13 N -0.59 -14.98 2.81 -173.49 -0.49 -15.47 16 14 C 0.16 4.04 8.14 59.85 0.49 4.53 16 15 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C 0.00 0.03 5.07 -17.43 -0.09 -0.05 16 18 N -0.91 -26.62 10.75 55.49 0.60 -26.02 16 19 Si 0.90 22.10 29.57 -169.99 -5.03 17.07 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H 0.05 0.99 6.69 -51.93 -0.35 0.65 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.65 6.33 -51.93 -0.33 0.32 16 26 H 0.09 1.86 7.06 -51.93 -0.37 1.49 16 27 H 0.07 1.42 7.21 -51.93 -0.37 1.04 16 28 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.02 0.48 7.77 -51.93 -0.40 0.08 16 32 H 0.05 1.50 6.82 -51.93 -0.35 1.14 16 33 H 0.00 -0.06 6.45 -51.93 -0.34 -0.40 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -29.69 296.81 -7.88 -37.56 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -4.16 Total: -3.48 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.89 Total: -10.00 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.11 Total: -41.50 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.42 Total: -2.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.69 -7.88 -37.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172859102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.986 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds