Wall clock time and date at job start Mon Mar 30 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47378 * 2 1 4 4 C 1.53003 * 109.47033 * 239.99780 * 2 1 3 5 5 C 1.50699 * 109.46871 * 64.72319 * 4 2 1 6 6 C 1.38469 * 120.01922 * 266.09752 * 5 4 2 7 7 F 1.35095 * 120.01552 * 0.02562 * 6 5 4 8 8 C 1.38441 * 119.96010 * 179.76381 * 6 5 4 9 9 C 1.38233 * 120.00265 * 0.49347 * 8 6 5 10 10 C 1.38203 * 120.03638 * 359.76219 * 9 8 6 11 11 C 1.38296 * 120.02098 * 86.37492 * 5 4 2 12 12 Cl 1.73596 * 119.99877 * 0.02562 * 11 5 4 13 13 N 1.46497 * 109.47268 * 120.00352 * 2 1 3 14 14 C 1.46497 * 120.00553 * 60.37091 * 13 2 1 15 15 C 1.36943 * 119.99987 * 240.37502 * 13 2 1 16 16 H 1.08002 * 119.99750 * 23.82159 * 15 13 2 17 17 C 1.38807 * 120.00378 * 203.82116 * 15 13 2 18 18 N 1.31620 * 119.99838 * 11.94890 * 17 15 13 19 19 Si 1.86803 * 120.00131 * 191.95562 * 17 15 13 20 20 H 1.48500 * 109.46822 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46994 * 119.99750 * 19 17 15 22 22 H 1.48492 * 109.46878 * 239.99901 * 19 17 15 23 23 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46938 * 300.00262 * 1 2 3 25 25 H 1.09001 * 109.46939 * 60.00286 * 1 2 3 26 26 H 1.09001 * 109.47149 * 184.72099 * 4 2 1 27 27 H 1.08998 * 109.47287 * 304.72345 * 4 2 1 28 28 H 1.08003 * 119.99828 * 180.23086 * 8 6 5 29 29 H 1.07997 * 119.97817 * 179.74232 * 9 8 6 30 30 H 1.08001 * 119.98143 * 179.97438 * 10 9 8 31 31 H 1.09007 * 109.46859 * 87.07923 * 14 13 2 32 32 H 1.08992 * 109.47505 * 207.07945 * 14 13 2 33 33 H 1.09000 * 109.47136 * 327.08763 * 14 13 2 34 34 H 0.97003 * 119.99680 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6354 0.0534 -2.4769 6 6 0.4662 -0.2687 -3.1452 7 9 -0.3126 -1.2773 -2.6968 8 6 0.0932 0.4470 -4.2701 9 6 0.8930 1.4759 -4.7314 10 6 2.0626 1.7939 -4.0674 11 6 2.4345 1.0827 -2.9400 12 17 3.9045 1.4823 -2.1075 13 7 2.0183 -0.6907 1.1961 14 6 1.6713 -2.0956 1.4239 15 6 2.7993 -0.0230 2.1014 16 1 2.7500 1.0540 2.1665 17 6 3.6543 -0.7302 2.9354 18 7 3.8935 -2.0039 2.7054 19 14 4.4652 0.1256 4.3844 20 1 4.0357 1.5466 4.4236 21 1 4.0637 -0.5483 5.6453 22 1 5.9412 0.0590 4.2358 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.1267 -0.7952 -1.2080 27 1 1.6092 -1.7216 -1.2925 28 1 -0.8205 0.1988 -4.7896 29 1 0.6037 2.0312 -5.6113 30 1 2.6869 2.5976 -4.4288 31 1 2.3990 -2.7352 0.9244 32 1 1.6792 -2.3030 2.4938 33 1 0.6774 -2.2940 1.0226 34 1 4.4912 -2.4980 3.2881 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172859102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:35 Heat of formation + Delta-G solvation = -26.047649 kcal Electronic energy + Delta-G solvation = -18997.113907 eV Core-core repulsion = 15870.240430 eV Total energy + Delta-G solvation = -3126.873477 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.91450 -40.36429 -38.23521 -37.36714 -35.00253 -32.79312 -31.36827 -30.51138 -28.03448 -27.66705 -25.15010 -23.74425 -22.86207 -20.66071 -18.93447 -18.57994 -17.70691 -17.22289 -16.69917 -16.61309 -15.77073 -15.61336 -15.39906 -14.81425 -14.57227 -14.28474 -14.15988 -13.85364 -13.59319 -13.32607 -12.85686 -12.76401 -12.63767 -12.40491 -12.35724 -12.26421 -12.09356 -12.06778 -11.84194 -11.60871 -11.45500 -10.63356 -9.76978 -9.66350 -8.74104 -7.83702 -5.29834 0.03415 0.10988 1.15653 1.44736 1.45637 1.56289 2.46713 2.51526 3.28934 3.31590 3.48316 3.79063 3.88524 3.98975 4.20433 4.29130 4.41434 4.53577 4.60106 4.74510 4.77963 4.91821 4.99184 5.03642 5.15952 5.20636 5.25710 5.27093 5.37171 5.52130 5.62960 5.68844 5.80664 6.35505 7.16100 7.87686 8.33395 9.21604 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.006241 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.344847 B = 4485.350096 C = 5260.694465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H 0.055 0.945 4 C -0.085 4.085 5 C -0.114 4.114 6 C 0.092 3.908 7 F -0.141 7.141 8 C -0.141 4.141 9 C -0.074 4.074 10 C -0.115 4.115 11 C -0.029 4.029 12 Cl -0.068 7.068 13 N -0.607 5.607 14 C 0.179 3.821 15 C -0.256 4.256 16 H 0.067 0.933 17 C -0.052 4.052 18 N -0.939 5.939 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.293 1.293 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.168 0.832 29 H 0.184 0.816 30 H 0.162 0.838 31 H -0.007 1.007 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 7.795 -17.141 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.075 3.925 3 H 0.073 0.927 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.073 3.927 7 F -0.120 7.120 8 C -0.159 4.159 9 C -0.092 4.092 10 C -0.134 4.134 11 C -0.055 4.055 12 Cl -0.039 7.039 13 N -0.329 5.329 14 C 0.034 3.966 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.247 4.247 18 N -0.586 5.586 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.216 1.216 22 H -0.220 1.220 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.186 0.814 29 H 0.202 0.798 30 H 0.179 0.821 31 H 0.011 0.989 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.090 7.686 -16.925 19.895 hybrid contribution 0.887 -0.394 1.392 1.697 sum -6.203 7.292 -15.533 18.246 Atomic orbital electron populations 1.22129 0.96463 1.01216 1.00759 1.20385 0.92988 0.94779 0.84362 0.92696 1.20984 1.01024 0.98282 0.92206 1.19828 0.95239 0.98343 0.98211 1.17602 0.89898 0.89131 0.96104 1.91484 1.73247 1.58171 1.89099 1.21592 1.02799 0.96620 0.94936 1.21387 0.91964 0.95680 1.00139 1.21460 0.98620 1.00163 0.93127 1.20841 0.90020 0.98087 0.96595 1.98406 1.34396 1.92806 1.78320 1.44174 1.58102 1.09429 1.21204 1.20449 0.93533 0.84273 0.98301 1.19547 1.15390 0.91549 1.12141 0.91502 1.25768 0.98713 0.97027 1.03185 1.70239 1.39524 1.09370 1.39420 0.85220 0.77588 0.78404 0.79382 1.19101 1.21639 1.21992 0.93268 0.93401 0.92085 0.92334 0.92382 0.81441 0.79838 0.82073 0.98854 0.95340 0.95910 0.94318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 8.23 71.98 0.59 -4.88 16 2 C 0.18 7.84 2.79 44.99 0.13 7.97 16 3 H 0.05 2.44 7.86 -2.39 -0.02 2.43 16 4 C -0.09 -3.41 4.15 29.85 0.12 -3.28 16 5 C -0.11 -3.60 4.60 -19.80 -0.09 -3.69 16 6 C 0.09 2.49 5.99 22.37 0.13 2.63 16 7 F -0.14 -4.24 15.59 44.97 0.70 -3.54 16 8 C -0.14 -2.56 10.03 22.32 0.22 -2.34 16 9 C -0.07 -1.06 10.04 22.26 0.22 -0.84 16 10 C -0.12 -2.21 9.83 22.30 0.22 -1.99 16 11 C -0.03 -0.80 6.31 22.32 0.14 -0.66 16 12 Cl -0.07 -2.19 27.36 -2.72 -0.07 -2.27 16 13 N -0.61 -31.75 2.81 -702.79 -1.97 -33.72 16 14 C 0.18 9.37 8.14 127.77 1.04 10.41 16 15 C -0.26 -14.54 9.58 84.03 0.80 -13.73 16 16 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 17 C -0.05 -3.00 5.07 84.86 0.43 -2.57 16 18 N -0.94 -57.13 10.75 21.65 0.23 -56.89 16 19 Si 0.97 46.35 29.57 68.60 2.03 48.38 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 23 H 0.05 1.84 6.69 -2.39 -0.02 1.82 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.98 6.33 -2.39 -0.02 1.97 16 26 H 0.06 2.62 7.06 -2.39 -0.02 2.61 16 27 H 0.06 2.40 7.21 -2.39 -0.02 2.38 16 28 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 30 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 31 H -0.01 -0.39 7.77 -2.38 -0.02 -0.40 16 32 H 0.03 1.59 6.82 -2.39 -0.02 1.58 16 33 H 0.02 1.04 6.45 -2.39 -0.02 1.03 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -66.95 296.81 5.98 -60.97 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 1.10 Total: 0.05 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 3.97 Total: -12.98 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -1.74 Total: -90.61 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.70 Total: -3.54 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.07 Total: -2.27 kcal Total: -66.95 5.98 -60.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172859102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.921 kcal (2) G-P(sol) polarization free energy of solvation -66.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds