Wall clock time and date at job start Mon Mar 30 2020 01:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46445 * 2 1 4 4 C 1.52999 * 109.46987 * 240.00545 * 2 1 3 5 5 C 1.50696 * 109.46793 * 175.00261 * 4 2 1 6 6 C 1.38245 * 119.98796 * 99.99626 * 5 4 2 7 7 C 1.38183 * 120.04288 * 179.97438 * 6 5 4 8 8 C 1.38486 * 120.00013 * 359.97438 * 7 6 5 9 9 F 1.35093 * 120.02127 * 180.02562 * 8 7 6 10 10 C 1.38421 * 119.96332 * 0.02562 * 8 7 6 11 11 C 1.38336 * 119.95923 * 359.72643 * 10 8 7 12 12 Cl 1.73602 * 120.00191 * 180.29898 * 11 10 8 13 13 N 1.46493 * 109.47236 * 119.99843 * 2 1 3 14 14 C 1.46507 * 119.99766 * 60.27830 * 13 2 1 15 15 C 1.36932 * 120.00546 * 240.00391 * 13 2 1 16 16 H 1.08003 * 119.99794 * 342.21848 * 15 13 2 17 17 C 1.38814 * 120.00553 * 162.22075 * 15 13 2 18 18 N 1.31619 * 119.99553 * 344.65045 * 17 15 13 19 19 Si 1.86798 * 120.00200 * 164.65051 * 17 15 13 20 20 H 1.48503 * 109.47136 * 60.00008 * 19 17 15 21 21 H 1.48500 * 109.47150 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47192 * 300.00264 * 19 17 15 23 23 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47204 * 299.99821 * 1 2 3 25 25 H 1.08998 * 109.46900 * 59.99956 * 1 2 3 26 26 H 1.09006 * 109.46931 * 294.99225 * 4 2 1 27 27 H 1.08992 * 109.47508 * 55.00032 * 4 2 1 28 28 H 1.08001 * 119.97506 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.99883 * 180.02562 * 7 6 5 30 30 H 1.08001 * 120.02214 * 179.97438 * 10 8 7 31 31 H 1.09004 * 109.47217 * 264.47635 * 14 13 2 32 32 H 1.09001 * 109.46915 * 24.47276 * 14 13 2 33 33 H 1.08991 * 109.47159 * 144.47739 * 14 13 2 34 34 H 0.97007 * 119.99724 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 6 4.3277 -1.6754 -0.9018 7 6 5.7049 -1.5794 -0.9599 8 6 6.2989 -0.4203 -1.4305 9 9 7.6454 -0.3261 -1.4880 10 6 5.5123 0.6418 -1.8420 11 6 4.1336 0.5420 -1.7880 12 17 3.1459 1.8703 -2.3110 13 7 2.0184 -0.6905 1.1961 14 6 1.6695 -2.0949 1.4249 15 6 2.8056 -0.0251 2.0976 16 1 3.3021 0.8896 1.8090 17 6 2.9656 -0.5262 3.3822 18 7 2.1454 -1.4507 3.8348 19 14 4.3449 0.1117 4.4685 20 1 4.1793 1.5734 4.6716 21 1 4.3002 -0.5793 5.7822 22 1 5.6520 -0.1523 3.8151 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7518 -1.7715 -1.2056 27 1 1.6055 -0.2616 -2.1370 28 1 3.8647 -2.5797 -0.5351 29 1 6.3180 -2.4085 -0.6391 30 1 5.9746 1.5463 -2.2088 31 1 0.7971 -2.1512 2.0760 32 1 1.4429 -2.5729 0.4718 33 1 2.5087 -2.6055 1.8970 34 1 2.2574 -1.8011 4.7324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172869823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:39 Heat of formation + Delta-G solvation = -23.526412 kcal Electronic energy + Delta-G solvation = -19150.675337 eV Core-core repulsion = 16023.911189 eV Total energy + Delta-G solvation = -3126.764148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.93291 -40.43819 -38.05878 -37.37991 -34.71334 -32.37115 -31.90401 -30.73412 -27.95159 -27.11649 -24.90598 -24.06744 -22.76671 -20.60418 -18.82502 -18.77974 -17.67590 -16.86094 -16.67140 -16.61781 -15.80028 -15.64413 -15.12928 -14.87492 -14.67006 -14.38961 -14.08853 -13.92865 -13.32972 -13.20724 -12.92738 -12.64851 -12.59897 -12.35611 -12.29160 -12.16662 -12.12345 -11.99083 -11.75505 -11.60166 -11.30859 -10.55811 -9.90694 -9.45651 -8.69954 -7.74728 -5.13859 0.06642 0.17340 1.09156 1.45095 1.47336 1.52546 2.50596 2.54657 3.27208 3.38610 3.69587 3.74006 3.90098 3.96518 4.21112 4.39031 4.50925 4.67802 4.69127 4.83419 4.85455 4.93898 4.99836 5.07617 5.17933 5.18214 5.33845 5.44991 5.54499 5.59945 5.72150 5.82067 5.86976 6.40343 7.25498 8.00814 8.40854 9.28332 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.008708 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.133687 B = 3214.555009 C = 4173.642407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.172 3.828 3 H 0.056 0.944 4 C -0.091 4.091 5 C -0.058 4.058 6 C -0.066 4.066 7 C -0.148 4.148 8 C 0.084 3.916 9 F -0.142 7.142 10 C -0.150 4.150 11 C -0.020 4.020 12 Cl -0.053 7.053 13 N -0.601 5.601 14 C 0.182 3.818 15 C -0.234 4.234 16 H 0.060 0.940 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.946 3.054 20 H -0.282 1.282 21 H -0.297 1.297 22 H -0.285 1.285 23 H 0.050 0.950 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.156 0.844 31 H -0.005 1.005 32 H 0.033 0.967 33 H 0.017 0.983 34 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 1.159 -14.223 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.065 3.935 3 H 0.074 0.926 4 C -0.130 4.130 5 C -0.059 4.059 6 C -0.084 4.084 7 C -0.167 4.167 8 C 0.065 3.935 9 F -0.121 7.121 10 C -0.169 4.169 11 C -0.046 4.046 12 Cl -0.024 7.024 13 N -0.323 5.323 14 C 0.038 3.962 15 C -0.365 4.365 16 H 0.078 0.922 17 C -0.245 4.245 18 N -0.585 5.585 19 Si 0.776 3.224 20 H -0.208 1.208 21 H -0.223 1.223 22 H -0.211 1.211 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.158 0.842 29 H 0.169 0.831 30 H 0.174 0.826 31 H 0.014 0.986 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.907 1.215 -14.121 14.468 hybrid contribution 0.895 0.397 1.203 1.551 sum 3.801 1.612 -12.918 13.562 Atomic orbital electron populations 1.22161 0.96806 1.01333 1.00745 1.20478 0.92625 0.95019 0.85372 0.92610 1.21179 0.89516 1.02883 0.99444 1.19859 0.97555 0.92088 0.96356 1.20939 0.92318 0.99085 0.96055 1.21395 0.96027 0.97920 1.01336 1.17493 0.76842 0.95769 1.03394 1.91473 1.29380 1.96666 1.94539 1.20994 0.92003 0.99870 1.04017 1.20509 0.90979 0.90244 1.02912 1.98346 1.69823 1.45584 1.88678 1.44087 1.58161 1.08157 1.21938 1.20453 0.97398 0.83757 0.94635 1.19300 1.19339 1.06517 0.91344 0.92247 1.25378 1.00758 1.00618 0.97729 1.70232 1.37878 1.33686 1.16711 0.85643 0.80653 0.77734 0.78323 1.20814 1.22293 1.21126 0.93109 0.95014 0.90829 0.90171 0.88875 0.84193 0.83058 0.82644 0.98621 0.94862 0.96418 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.20 71.98 0.66 -4.41 16 2 C 0.17 6.37 2.64 44.99 0.12 6.49 16 3 H 0.06 2.19 7.02 -2.38 -0.02 2.17 16 4 C -0.09 -2.74 4.23 29.85 0.13 -2.61 16 5 C -0.06 -1.80 4.87 -19.84 -0.10 -1.89 16 6 C -0.07 -2.03 9.66 22.26 0.22 -1.82 16 7 C -0.15 -4.33 10.03 22.32 0.22 -4.10 16 8 C 0.08 2.49 7.30 22.37 0.16 2.66 16 9 F -0.14 -4.14 17.27 44.97 0.78 -3.36 16 10 C -0.15 -4.24 9.81 22.34 0.22 -4.02 16 11 C -0.02 -0.58 6.31 22.32 0.14 -0.44 16 12 Cl -0.05 -1.42 26.67 -2.72 -0.07 -1.49 16 13 N -0.60 -27.76 2.53 -702.77 -1.78 -29.53 16 14 C 0.18 8.38 8.01 127.77 1.02 9.41 16 15 C -0.23 -12.43 9.65 84.03 0.81 -11.62 16 16 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 17 C -0.05 -2.79 5.07 84.86 0.43 -2.36 16 18 N -0.94 -54.51 10.55 21.65 0.23 -54.29 16 19 Si 0.95 45.58 29.58 68.60 2.03 47.61 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 23 H 0.05 1.66 7.68 -2.39 -0.02 1.64 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.08 2.30 6.34 -2.38 -0.02 2.28 16 27 H 0.09 2.37 7.34 -2.39 -0.02 2.35 16 28 H 0.14 4.20 8.04 -2.91 -0.02 4.17 16 29 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 31 H 0.00 -0.24 7.45 -2.39 -0.02 -0.25 16 32 H 0.03 1.26 6.35 -2.39 -0.02 1.24 16 33 H 0.02 0.88 7.07 -2.39 -0.02 0.86 16 34 H 0.24 14.02 8.31 -92.70 -0.77 13.25 16 Total: -1.00 -59.75 300.48 6.32 -53.43 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.10 Total: 2.34 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 4.04 Total: -14.71 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.55 Total: -83.82 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.36 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.07 Total: -1.49 kcal Total: -59.75 6.32 -53.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172869823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.904 kcal (2) G-P(sol) polarization free energy of solvation -59.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds