Wall clock time and date at job start Mon Mar 30 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.47041 * 2 1 4 4 C 1.52992 * 109.47683 * 120.00314 * 2 1 3 5 5 C 1.50696 * 109.47469 * 185.24297 * 4 2 1 6 6 C 1.38254 * 119.97784 * 253.63254 * 5 4 2 7 7 C 1.38181 * 120.03358 * 180.25263 * 6 5 4 8 8 C 1.38484 * 120.00431 * 359.45100 * 7 6 5 9 9 F 1.35100 * 120.02219 * 180.25597 * 8 7 6 10 10 C 1.38415 * 119.96294 * 0.27158 * 8 7 6 11 11 C 1.38335 * 119.98446 * 73.33849 * 5 4 2 12 12 Cl 1.73606 * 120.00078 * 0.04187 * 11 5 4 13 13 N 1.46496 * 109.47042 * 240.00729 * 2 1 3 14 14 C 1.46504 * 120.00014 * 306.14982 * 13 2 1 15 15 C 1.36940 * 120.00281 * 126.14774 * 13 2 1 16 16 H 1.08005 * 120.00144 * 323.34531 * 15 13 2 17 17 C 1.38818 * 119.99903 * 143.34203 * 15 13 2 18 18 N 1.31610 * 119.99915 * 174.75579 * 17 15 13 19 19 Si 1.86800 * 120.00000 * 354.75441 * 17 15 13 20 20 H 1.48503 * 109.47265 * 95.68774 * 19 17 15 21 21 H 1.48497 * 109.47016 * 215.69060 * 19 17 15 22 22 H 1.48506 * 109.47239 * 335.69211 * 19 17 15 23 23 H 1.09006 * 109.47069 * 299.99675 * 1 2 3 24 24 H 1.09002 * 109.47422 * 59.99653 * 1 2 3 25 25 H 1.08998 * 109.46867 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46857 * 65.23631 * 4 2 1 27 27 H 1.09004 * 109.47337 * 305.24549 * 4 2 1 28 28 H 1.08000 * 119.98394 * 0.02562 * 6 5 4 29 29 H 1.08006 * 119.99481 * 179.72727 * 7 6 5 30 30 H 1.08003 * 120.02499 * 179.97438 * 10 8 7 31 31 H 1.09003 * 109.47186 * 84.68706 * 14 13 2 32 32 H 1.08992 * 109.47332 * 204.69017 * 14 13 2 33 33 H 1.08997 * 109.46754 * 324.69118 * 14 13 2 34 34 H 0.97005 * 120.00512 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5415 -0.6098 1.3157 6 6 4.3292 -1.7097 1.0307 7 6 5.7058 -1.6102 1.0965 8 6 6.2975 -0.4053 1.4369 9 9 7.6436 -0.3062 1.4963 10 6 5.5091 0.6974 1.7167 11 6 4.1309 0.5945 1.6560 12 17 3.1410 1.9768 2.0073 13 7 2.0183 -0.6904 -1.1962 14 6 1.5568 -2.0477 -1.4983 15 6 2.9061 -0.0672 -2.0321 16 1 2.8231 0.9942 -2.2136 17 6 3.9127 -0.7998 -2.6463 18 7 4.7013 -0.2235 -3.5284 19 14 4.1478 -2.6034 -2.2207 20 1 3.4356 -3.4439 -3.2165 21 1 5.5958 -2.9320 -2.2407 22 1 3.5988 -2.8682 -0.8665 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7554 -1.7725 1.2034 27 1 1.6022 -0.2646 2.1367 28 1 3.8682 -2.6481 0.7601 29 1 6.3204 -2.4710 0.8780 30 1 5.9696 1.6375 1.9827 31 1 0.6094 -1.9983 -2.0351 32 1 2.2983 -2.5546 -2.1158 33 1 1.4193 -2.5999 -0.5687 34 1 5.4050 -0.7353 -3.9573 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172869824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:41 Heat of formation + Delta-G solvation = 6.920273 kcal Electronic energy + Delta-G solvation = -19591.176514 eV Core-core repulsion = 16465.732633 eV Total energy + Delta-G solvation = -3125.443881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.59615 -39.15701 -36.65093 -36.11480 -32.89953 -31.17619 -30.67207 -29.71757 -26.29517 -25.81647 -23.29295 -22.81046 -21.43960 -19.14701 -17.58032 -16.94276 -16.28477 -15.70458 -15.39688 -15.29976 -14.51336 -14.21704 -13.79264 -13.55293 -13.18013 -12.89317 -12.72974 -12.38056 -12.20087 -12.10556 -11.83043 -11.53043 -11.17352 -10.93471 -10.88615 -10.70226 -10.50867 -10.27368 -9.90868 -9.79859 -9.21411 -8.59524 -8.49715 -8.08087 -6.82026 -5.89387 -3.38520 1.39678 1.49892 2.38726 3.29060 3.31061 3.47243 3.83721 4.50444 4.60350 4.95649 5.02016 5.17487 5.21662 5.38377 5.52550 5.71628 5.81253 5.94115 6.00728 6.08538 6.10850 6.21096 6.26091 6.29766 6.31783 6.46075 6.47479 6.60051 6.72793 6.82675 6.94211 7.12304 8.11010 8.40910 8.99955 9.74874 10.12776 11.25933 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.011703 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.532870 B = 2392.047247 C = 3472.859782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.080 0.920 4 C -0.103 4.103 5 C -0.043 4.043 6 C -0.070 4.070 7 C -0.149 4.149 8 C 0.099 3.901 9 F -0.141 7.141 10 C -0.145 4.145 11 C -0.001 4.001 12 Cl -0.065 7.065 13 N -0.605 5.605 14 C 0.118 3.882 15 C -0.258 4.258 16 H 0.080 0.920 17 C 0.028 3.972 18 N -0.914 5.914 19 Si 0.898 3.102 20 H -0.298 1.298 21 H -0.311 1.311 22 H -0.255 1.255 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.013 0.987 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -1.647 12.671 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 H 0.098 0.902 4 C -0.142 4.142 5 C -0.044 4.044 6 C -0.088 4.088 7 C -0.168 4.168 8 C 0.079 3.921 9 F -0.120 7.120 10 C -0.164 4.164 11 C -0.028 4.028 12 Cl -0.036 7.036 13 N -0.329 5.329 14 C -0.026 4.026 15 C -0.386 4.386 16 H 0.098 0.902 17 C -0.171 4.171 18 N -0.557 5.557 19 Si 0.733 3.267 20 H -0.228 1.228 21 H -0.240 1.240 22 H -0.181 1.181 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.881 -1.522 12.571 12.986 hybrid contribution 0.539 -0.932 -0.186 1.093 sum -2.342 -2.454 12.385 12.841 Atomic orbital electron populations 1.22198 0.97672 1.01028 1.00846 1.20553 0.91651 0.96663 0.84402 0.90211 1.21311 0.90006 1.02418 1.00459 1.19582 0.97003 0.91201 0.96623 1.21081 0.92171 0.99338 0.96171 1.21103 0.95956 0.96955 1.02792 1.17303 0.76742 0.94609 1.03436 1.91471 1.29452 1.96832 1.94248 1.20750 0.92133 0.98774 1.04774 1.20300 0.90462 0.88509 1.03488 1.98334 1.69979 1.42207 1.93066 1.44069 1.51660 1.13589 1.23579 1.21295 0.96637 0.87585 0.97097 1.18810 1.04548 0.94913 1.20361 0.90242 1.25400 0.95366 0.98234 0.98106 1.69736 1.20700 1.36281 1.28953 0.86850 0.74591 0.86253 0.78985 1.22764 1.24014 1.18121 0.93400 0.92522 0.93382 0.91299 0.91009 0.84048 0.85053 0.84369 0.96898 0.95040 0.95043 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.10 37.16 0.34 -2.14 16 2 C 0.17 3.24 2.58 -67.94 -0.18 3.07 16 3 H 0.08 1.59 6.20 -51.92 -0.32 1.27 16 4 C -0.10 -1.66 4.31 -27.89 -0.12 -1.78 16 5 C -0.04 -0.76 4.92 -104.58 -0.51 -1.28 16 6 C -0.07 -1.24 7.41 -39.60 -0.29 -1.54 16 7 C -0.15 -2.63 10.03 -39.51 -0.40 -3.03 16 8 C 0.10 1.75 7.30 -39.43 -0.29 1.46 16 9 F -0.14 -2.47 17.27 2.25 0.04 -2.43 16 10 C -0.14 -2.47 9.81 -39.48 -0.39 -2.86 16 11 C 0.00 -0.01 6.20 -39.51 -0.25 -0.26 16 12 Cl -0.06 -1.00 26.12 -51.86 -1.35 -2.35 16 13 N -0.61 -13.52 2.24 -173.48 -0.39 -13.91 16 14 C 0.12 2.44 7.61 59.85 0.46 2.89 16 15 C -0.26 -7.00 10.00 -15.06 -0.15 -7.15 16 16 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 17 C 0.03 0.80 5.48 -17.43 -0.10 0.70 16 18 N -0.91 -28.17 13.97 55.49 0.78 -27.39 16 19 Si 0.90 21.92 23.06 -169.99 -3.92 18.00 16 20 H -0.30 -7.39 7.03 56.52 0.40 -6.99 16 21 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 22 H -0.25 -5.39 3.22 56.52 0.18 -5.21 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.71 7.53 -51.93 -0.39 0.32 16 26 H 0.07 1.06 6.55 -51.93 -0.34 0.72 16 27 H 0.07 1.01 7.66 -51.93 -0.40 0.61 16 28 H 0.14 2.43 5.94 -52.49 -0.31 2.12 16 29 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 30 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.03 0.72 2.15 -51.93 -0.11 0.61 16 33 H 0.03 0.56 6.62 -51.93 -0.34 0.22 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 284.32 15.07 4.28 4.28 Total: -1.00 -29.78 284.32 -6.55 -36.33 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.11 Total: -0.61 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -1.87 Total: -11.91 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.39 Total: -41.30 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -3.92 Total: 18.00 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.35 Total: -2.35 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.78 -6.55 -36.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172869824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.247 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds