Wall clock time and date at job start Mon Mar 30 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39927 * 125.75258 * 2 1 4 4 C 1.30411 * 108.96282 * 180.02562 * 3 2 1 5 5 C 1.41340 * 108.04633 * 0.02562 * 4 3 2 6 6 C 1.47306 * 126.43299 * 180.02562 * 5 4 3 7 7 O 1.21619 * 119.99557 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99964 * 0.02562 * 6 5 4 9 9 C 1.46496 * 119.99613 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46846 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47294 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47205 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00301 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99914 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00205 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99986 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46922 * 89.99802 * 16 14 12 18 18 H 1.48500 * 109.47103 * 209.99676 * 16 14 12 19 19 H 1.48496 * 109.46936 * 330.00013 * 16 14 12 20 20 C 1.34356 * 125.74968 * 180.33907 * 2 1 3 21 21 Cl 1.73598 * 126.31827 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46982 * 89.97983 * 1 2 3 23 23 H 1.09002 * 109.47122 * 209.97772 * 1 2 3 24 24 H 1.09001 * 109.47357 * 329.98115 * 1 2 3 25 25 H 1.08000 * 125.97580 * 180.02562 * 4 3 2 26 26 H 0.96996 * 119.99871 * 359.97438 * 8 6 5 27 27 H 1.09002 * 109.47226 * 299.99334 * 9 8 6 28 28 H 1.08999 * 109.47406 * 59.99933 * 9 8 6 29 29 H 1.08995 * 109.47938 * 299.99929 * 10 9 8 30 30 H 1.09004 * 109.47171 * 59.99908 * 10 9 8 31 31 H 1.09002 * 109.47200 * 300.00133 * 11 10 9 32 32 H 1.08996 * 109.47037 * 59.99695 * 11 10 9 33 33 H 0.96996 * 120.00500 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5311 0.7589 -0.0006 5 6 3.5620 -0.6542 -0.0015 6 6 4.7661 -1.5028 -0.0019 7 8 4.6563 -2.7140 -0.0032 8 7 5.9893 -0.9370 -0.0007 9 6 7.1867 -1.7810 -0.0016 10 6 8.4346 -0.8958 -0.0006 11 6 9.6853 -1.7772 -0.0009 12 6 10.9143 -0.9053 0.0008 13 1 10.8136 0.1700 0.0023 14 6 12.1675 -1.4803 0.0013 15 7 13.2402 -0.7194 0.0033 16 14 12.3417 -3.3402 0.0008 17 1 12.3887 -3.8325 -1.3994 18 1 13.5947 -3.7202 0.7014 19 1 11.1802 -3.9463 0.6999 20 6 2.2499 -1.0904 -0.0065 21 17 1.7154 -2.7420 -0.0169 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5141 25 1 4.3909 1.4124 -0.0003 26 1 6.0768 0.0290 0.0000 27 1 7.1875 -2.4116 0.8875 28 1 7.1879 -2.4090 -0.8925 29 1 8.4338 -0.2655 -0.8898 30 1 8.4336 -0.2674 0.8901 31 1 9.6860 -2.4072 0.8886 32 1 9.6864 -2.4059 -0.8913 33 1 14.1218 -1.1239 0.0033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191950268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:52 Heat of formation + Delta-G solvation = 0.263766 kcal Electronic energy + Delta-G solvation = -17595.638080 eV Core-core repulsion = 14489.825513 eV Total energy + Delta-G solvation = -3105.812567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.54355 -40.21930 -38.04585 -36.89405 -35.13819 -34.55883 -33.19333 -31.38895 -29.23647 -27.86014 -24.99589 -23.47804 -22.27261 -22.06993 -21.08907 -19.22534 -18.79749 -17.22499 -17.10821 -16.87920 -16.47678 -16.17086 -15.76874 -15.23641 -14.92576 -14.71927 -14.52938 -13.90272 -13.75242 -13.64226 -13.50640 -13.14864 -12.89458 -12.68990 -12.64170 -11.97565 -11.84605 -11.73016 -11.53719 -11.28360 -10.90977 -10.72949 -10.59018 -10.14912 -9.75325 -8.26357 -6.29791 0.10894 0.19196 0.99029 1.39466 1.41141 1.46803 1.52993 2.30196 2.35199 2.39277 3.09718 3.29978 3.78731 3.86395 4.15217 4.27812 4.28639 4.31602 4.45236 4.58158 4.58448 4.96135 4.99736 5.09542 5.14918 5.40202 5.45619 5.57436 5.61970 5.69152 6.21804 6.31318 6.64948 6.78863 7.30444 7.35085 8.90097 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040535 B = 0.003233 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.596251 B = 8658.588617 C = 9318.125674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.350 5.350 3 N -0.289 5.289 4 C 0.099 3.901 5 C -0.291 4.291 6 C 0.586 3.414 7 O -0.575 6.575 8 N -0.710 5.710 9 C 0.130 3.870 10 C -0.101 4.101 11 C -0.013 4.013 12 C -0.529 4.529 13 H 0.039 0.961 14 C 0.004 3.996 15 N -0.952 5.952 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.247 1.247 20 C 0.174 3.826 21 Cl 0.030 6.970 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.116 0.884 25 H 0.231 0.769 26 H 0.413 0.587 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.320 1.039 0.032 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.131 5.131 3 N -0.110 5.110 4 C -0.087 4.087 5 C -0.307 4.307 6 C 0.374 3.626 7 O -0.456 6.456 8 N -0.362 5.362 9 C 0.007 3.993 10 C -0.138 4.138 11 C -0.051 4.051 12 C -0.567 4.567 13 H 0.057 0.943 14 C -0.193 4.193 15 N -0.593 5.593 16 Si 0.770 3.230 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.170 1.170 20 C 0.014 3.986 21 Cl 0.058 6.942 22 H 0.120 0.880 23 H 0.125 0.875 24 H 0.135 0.865 25 H 0.247 0.753 26 H 0.250 0.750 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.240 1.041 0.039 30.258 hybrid contribution 1.205 -0.988 -0.032 1.559 sum -29.035 0.053 0.007 29.035 Atomic orbital electron populations 1.22524 0.70549 1.06968 1.06043 1.48917 1.08819 1.01491 1.53914 1.77330 1.02373 1.05837 1.25423 1.24542 0.96310 0.92668 0.95206 1.19907 0.91478 0.94745 1.24539 1.17342 0.82835 0.86738 0.75716 1.90784 1.87227 1.15321 1.52247 1.45669 1.04567 1.11189 1.74734 1.21296 0.83116 0.93407 1.01509 1.21486 0.91997 0.98035 1.02332 1.19472 0.92989 0.95812 0.96809 1.21491 0.91185 0.94041 1.49953 0.94307 1.25980 0.95558 1.03425 0.94318 1.70058 0.98630 1.37678 1.52911 0.85710 0.78197 0.79930 0.79149 1.19293 1.21203 1.17021 1.22188 0.91101 0.84629 1.00680 1.98455 1.89767 1.09808 1.96175 0.88010 0.87524 0.86542 0.75318 0.74980 0.92324 0.92261 0.91538 0.91565 0.96101 0.96207 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 11.27 127.77 1.44 2.04 16 2 N -0.35 -6.05 3.98 -357.41 -1.42 -7.48 16 3 N -0.29 -5.54 12.49 -56.26 -0.70 -6.24 16 4 C 0.10 1.78 11.50 85.67 0.99 2.77 16 5 C -0.29 -6.78 6.13 -20.12 -0.12 -6.91 16 6 C 0.59 16.76 7.81 86.63 0.68 17.43 16 7 O -0.58 -20.46 15.64 -4.09 -0.06 -20.53 16 8 N -0.71 -18.23 5.55 -466.50 -2.59 -20.82 16 9 C 0.13 4.06 5.67 86.38 0.49 4.55 16 10 C -0.10 -3.54 5.27 30.60 0.16 -3.38 16 11 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 12 C -0.53 -29.82 9.66 25.60 0.25 -29.57 16 13 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 14 C 0.00 0.22 5.47 84.66 0.46 0.69 16 15 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 16 Si 0.95 44.35 27.47 68.60 1.88 46.23 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 20 C 0.17 3.76 7.53 84.32 0.63 4.39 16 21 Cl 0.03 0.62 27.35 -2.72 -0.07 0.54 16 22 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.11 0.53 7.78 -2.39 -0.02 0.51 16 24 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.23 2.35 7.50 -2.91 -0.02 2.33 16 26 H 0.41 7.91 7.42 -92.71 -0.69 7.22 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 32 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -74.55 304.19 2.82 -71.73 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 0.39 Total: 4.19 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.10 Total: -8.45 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -4.41 Total: -93.73 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.06 Total: -20.53 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.07 Total: 0.54 kcal Total: -74.55 2.82 -71.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191950268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.993 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds