Wall clock time and date at job start Mon Mar 30 2020 01:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.08993 * 109.47268 * 304.99834 * 3 2 1 5 5 C 1.50699 * 109.47349 * 184.99527 * 3 2 1 6 6 H 1.07993 * 120.00777 * 240.00046 * 5 3 2 7 7 C 1.37884 * 119.99553 * 60.00042 * 5 3 2 8 8 N 1.31512 * 120.00219 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99888 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47314 * 90.00206 * 9 7 5 11 11 H 1.48500 * 109.46890 * 210.00209 * 9 7 5 12 12 H 1.48499 * 109.47173 * 329.99943 * 9 7 5 13 13 N 1.46504 * 109.46930 * 65.00065 * 3 2 1 14 14 C 1.34777 * 119.99854 * 274.99613 * 13 3 2 15 15 O 1.21623 * 119.99973 * 0.02562 * 14 13 3 16 16 C 1.47300 * 119.99880 * 180.27792 * 14 13 3 17 17 C 1.41341 * 126.43795 * 359.75029 * 16 14 13 18 18 N 1.30406 * 108.04931 * 180.02562 * 17 16 14 19 19 N 1.39928 * 108.96069 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.74961 * 180.02562 * 19 18 17 21 21 C 1.34349 * 108.50297 * 359.72648 * 19 18 17 22 22 Cl 1.73598 * 126.32190 * 180.28469 * 21 19 18 23 23 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 25 25 H 1.08994 * 109.46809 * 59.99850 * 1 2 3 26 26 H 1.08997 * 109.47427 * 239.99793 * 2 1 3 27 27 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 28 28 H 0.96996 * 120.00701 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00410 * 95.00338 * 13 3 2 30 30 H 1.07994 * 125.97245 * 0.02562 * 17 16 14 31 31 H 1.09000 * 109.47449 * 89.97618 * 20 19 18 32 32 H 1.09002 * 109.47276 * 209.97891 * 20 19 18 33 33 H 1.08998 * 109.47161 * 329.97622 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3522 -0.7597 11 1 6.3836 0.9213 -2.8163 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3417 2.6319 0.4317 16 6 0.0478 3.3283 2.6235 17 6 0.8384 3.4459 3.7892 18 7 0.1469 4.0975 4.6824 19 7 -1.1017 4.4238 4.1415 20 6 -2.1674 5.1568 4.8294 21 6 -1.1560 3.9575 2.8827 22 17 -2.4921 4.1130 1.7853 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0605 -2.9502 29 1 2.2719 2.1231 1.9979 30 1 1.8400 3.0630 3.9177 31 1 -2.0479 6.2252 4.6499 32 1 -3.1359 4.8307 4.4502 33 1 -2.1114 4.9597 5.8999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191950865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:12 Heat of formation + Delta-G solvation = 31.929572 kcal Electronic energy + Delta-G solvation = -18689.571682 eV Core-core repulsion = 15585.132248 eV Total energy + Delta-G solvation = -3104.439434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35072 -38.53017 -36.84305 -34.92157 -33.61328 -32.23710 -30.94291 -29.92455 -27.54875 -26.52728 -23.30423 -22.35159 -21.14824 -20.05262 -19.21144 -18.04291 -16.53625 -15.98616 -15.47296 -15.22285 -14.62027 -14.34685 -14.29439 -13.62010 -13.14163 -13.01183 -12.84308 -12.59178 -12.00153 -11.87857 -11.71677 -11.42564 -11.19296 -10.94541 -10.77677 -10.74296 -10.26183 -10.10416 -9.56321 -9.51544 -9.01453 -8.93136 -8.60657 -8.44359 -7.70100 -6.07395 -4.16309 1.35996 1.37436 2.24084 2.48713 3.27736 3.34837 3.36887 4.05069 4.10393 4.34437 4.55057 4.84227 4.88421 5.10037 5.18384 5.24107 5.25595 5.87888 6.29132 6.42583 6.47254 6.55182 6.74938 7.13360 7.27915 7.34671 7.45135 7.54507 7.68845 7.81654 7.97649 8.24574 8.76238 8.84959 9.24094 9.51353 10.97944 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.004991 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.137771 B = 5608.536009 C = 6175.143893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.575 3.425 15 O -0.540 6.540 16 C -0.254 4.254 17 C 0.088 3.912 18 N -0.282 5.282 19 N -0.362 5.362 20 C 0.094 3.906 21 C 0.172 3.828 22 Cl 0.025 6.975 23 H 0.020 0.980 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.386 0.614 30 H 0.199 0.801 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.275 7.136 12.617 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.359 3.641 15 O -0.419 6.419 16 C -0.270 4.270 17 C -0.098 4.098 18 N -0.103 5.103 19 N -0.145 5.145 20 C -0.047 4.047 21 C 0.014 3.986 22 Cl 0.053 6.947 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.216 0.784 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.043 7.563 12.883 18.001 hybrid contribution 1.126 -0.285 -0.550 1.285 sum -8.917 7.278 12.333 16.869 Atomic orbital electron populations 1.21835 0.98318 0.97904 1.01361 1.21933 0.92660 0.99821 1.02189 1.18777 0.94088 0.89125 0.80894 0.93157 1.21240 0.90763 1.38854 1.06236 0.92080 1.24872 0.98465 0.94884 0.95410 1.69893 1.35048 1.37701 1.09332 0.86479 0.85066 0.78404 0.77326 1.20601 1.21156 1.19878 1.46269 1.14141 1.56058 1.18488 1.17010 0.83010 0.78839 0.85224 1.90781 1.51412 1.60303 1.39397 1.20405 0.94405 1.13165 0.99048 1.24085 0.99989 0.95849 0.89926 1.77265 0.90499 1.20908 1.21654 1.48471 1.13661 1.43819 1.08554 1.22011 0.87241 0.96381 0.99079 1.22040 0.92499 0.98807 0.85234 1.98439 1.41844 1.96192 1.58236 0.96056 0.94140 0.93122 0.88371 0.95081 0.92628 0.78187 0.78417 0.90017 0.89157 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.60 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.70 -14.51 5.01 -56.05 -0.28 -14.79 16 14 C 0.57 11.67 6.38 -12.58 -0.08 11.59 16 15 O -0.54 -12.48 12.78 5.26 0.07 -12.41 16 16 C -0.25 -4.26 6.13 -105.02 -0.64 -4.90 16 17 C 0.09 1.23 11.50 -16.98 -0.20 1.04 16 18 N -0.28 -3.91 12.49 30.86 0.39 -3.52 16 19 N -0.36 -4.61 3.98 -64.32 -0.26 -4.87 16 20 C 0.09 0.72 11.28 59.85 0.67 1.39 16 21 C 0.17 2.59 7.53 -16.43 -0.12 2.46 16 22 Cl 0.02 0.35 27.35 -51.86 -1.42 -1.07 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 26 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 6.85 7.49 -40.82 -0.31 6.54 16 30 H 0.20 2.15 7.50 -52.49 -0.39 1.76 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.56 7.78 -51.93 -0.40 0.16 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -31.29 295.21 -5.93 -37.23 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.74 Total: 3.77 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.75 Total: -0.28 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.47 Total: -47.16 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.42 Total: -1.07 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.29 -5.93 -37.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191950865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.158 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds