Wall clock time and date at job start Mon Mar 30 2020 01:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.08993 * 109.47268 * 304.99834 * 3 2 1 5 5 C 1.50699 * 109.47349 * 184.99527 * 3 2 1 6 6 H 1.07993 * 120.00777 * 240.00046 * 5 3 2 7 7 C 1.37884 * 119.99553 * 60.00042 * 5 3 2 8 8 N 1.31512 * 120.00219 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99888 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47314 * 90.00206 * 9 7 5 11 11 H 1.48500 * 109.46890 * 210.00209 * 9 7 5 12 12 H 1.48499 * 109.47173 * 329.99943 * 9 7 5 13 13 N 1.46504 * 109.46930 * 65.00065 * 3 2 1 14 14 C 1.34777 * 119.99854 * 274.99613 * 13 3 2 15 15 O 1.21623 * 119.99973 * 0.02562 * 14 13 3 16 16 C 1.47300 * 119.99880 * 180.27792 * 14 13 3 17 17 C 1.41341 * 126.43795 * 359.75029 * 16 14 13 18 18 N 1.30406 * 108.04931 * 180.02562 * 17 16 14 19 19 N 1.39928 * 108.96069 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.74961 * 180.02562 * 19 18 17 21 21 C 1.34349 * 108.50297 * 359.72648 * 19 18 17 22 22 Cl 1.73598 * 126.32190 * 180.28469 * 21 19 18 23 23 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 25 25 H 1.08994 * 109.46809 * 59.99850 * 1 2 3 26 26 H 1.08997 * 109.47427 * 239.99793 * 2 1 3 27 27 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 28 28 H 0.96996 * 120.00701 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00410 * 95.00338 * 13 3 2 30 30 H 1.07994 * 125.97245 * 0.02562 * 17 16 14 31 31 H 1.09000 * 109.47449 * 89.97618 * 20 19 18 32 32 H 1.09002 * 109.47276 * 209.97891 * 20 19 18 33 33 H 1.08998 * 109.47161 * 329.97622 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3522 -0.7597 11 1 6.3836 0.9213 -2.8163 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3417 2.6319 0.4317 16 6 0.0478 3.3283 2.6235 17 6 0.8384 3.4459 3.7892 18 7 0.1469 4.0975 4.6824 19 7 -1.1017 4.4238 4.1415 20 6 -2.1674 5.1568 4.8294 21 6 -1.1560 3.9575 2.8827 22 17 -2.4921 4.1130 1.7853 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0605 -2.9502 29 1 2.2719 2.1231 1.9979 30 1 1.8400 3.0630 3.9177 31 1 -2.0479 6.2252 4.6499 32 1 -3.1359 4.8307 4.4502 33 1 -2.1114 4.9597 5.8999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191950865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:12 Heat of formation + Delta-G solvation = 10.598873 kcal Electronic energy + Delta-G solvation = -18690.496651 eV Core-core repulsion = 15585.132248 eV Total energy + Delta-G solvation = -3105.364403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.46786 -40.17517 -37.98108 -36.78044 -34.66632 -34.07641 -32.71628 -31.16858 -29.07723 -27.84940 -25.09836 -23.82870 -22.27976 -21.62050 -20.93209 -19.45149 -18.12982 -17.14308 -16.98460 -16.92075 -16.08444 -15.89493 -15.67327 -14.97807 -14.58864 -14.39794 -13.99629 -13.64178 -13.55560 -13.33497 -13.10319 -13.09159 -12.88977 -12.77096 -12.60615 -12.11036 -11.98760 -11.87633 -11.51406 -10.97220 -10.63383 -10.52504 -10.44413 -9.86220 -9.44100 -8.09692 -6.26086 0.19814 0.25017 1.07148 1.49154 1.49716 1.54790 1.60049 2.41713 2.58627 2.74190 3.20139 3.40576 3.89711 3.97962 4.30759 4.35710 4.56193 4.57954 4.59598 4.65331 4.85749 5.14174 5.20897 5.34783 5.47047 5.52606 5.64309 5.71439 5.88639 6.02169 6.24695 6.26965 6.82220 7.11303 7.40805 7.69096 8.95698 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.004991 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.137771 B = 5608.536009 C = 6175.143893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.282 3.718 4 H 0.001 0.999 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.699 5.699 14 C 0.574 3.426 15 O -0.575 6.575 16 C -0.286 4.286 17 C 0.096 3.904 18 N -0.286 5.286 19 N -0.350 5.350 20 C 0.079 3.921 21 C 0.171 3.829 22 Cl 0.028 6.972 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.263 0.737 29 H 0.402 0.598 30 H 0.225 0.775 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 7.768 14.815 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.019 0.981 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.348 5.348 14 C 0.362 3.638 15 O -0.457 6.457 16 C -0.302 4.302 17 C -0.090 4.090 18 N -0.107 5.107 19 N -0.132 5.132 20 C -0.059 4.059 21 C 0.012 3.988 22 Cl 0.056 6.944 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.236 0.764 30 H 0.241 0.759 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.661 8.222 15.150 19.760 hybrid contribution 0.885 -0.402 -1.185 1.533 sum -8.776 7.820 13.966 18.254 Atomic orbital electron populations 1.21661 0.97036 0.98895 1.00334 1.21783 0.93704 0.99241 1.01207 1.18350 0.93547 0.89055 0.81203 0.98140 1.21590 0.91450 1.38646 1.06617 0.90918 1.25729 1.03041 0.94507 0.95080 1.70049 1.36935 1.38533 1.09865 0.85407 0.79463 0.78821 0.76997 1.19766 1.21513 1.18910 1.45984 1.14972 1.56180 1.17633 1.17427 0.82194 0.78135 0.86085 1.90756 1.52284 1.61560 1.41063 1.20096 0.96208 1.15370 0.98509 1.24435 1.00794 0.95222 0.88575 1.77261 0.90935 1.20914 1.21622 1.48870 1.14048 1.42606 1.07695 1.22507 0.86447 0.97026 0.99949 1.22102 0.92192 0.98394 0.86152 1.98440 1.41468 1.96112 1.58357 0.93922 0.93820 0.95410 0.91061 0.94108 0.92731 0.76359 0.75872 0.88098 0.87624 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.37 2.24 44.24 0.10 14.46 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.54 -28.49 8.73 25.60 0.22 -28.27 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.92 -52.21 11.29 21.45 0.24 -51.97 16 9 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.70 -28.90 5.01 -449.50 -2.25 -31.16 16 14 C 0.57 23.42 6.38 86.63 0.55 23.97 16 15 O -0.58 -27.24 12.78 -4.10 -0.05 -27.29 16 16 C -0.29 -9.27 6.13 -20.12 -0.12 -9.40 16 17 C 0.10 2.48 11.50 85.67 0.99 3.47 16 18 N -0.29 -7.19 12.49 -56.26 -0.70 -7.89 16 19 N -0.35 -8.06 3.98 -357.40 -1.42 -9.49 16 20 C 0.08 0.97 11.28 127.77 1.44 2.41 16 21 C 0.17 4.92 7.53 84.32 0.63 5.56 16 22 Cl 0.03 0.77 27.35 -2.72 -0.07 0.70 16 23 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 25 H 0.03 1.35 7.84 -2.39 -0.02 1.33 16 26 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.40 13.84 7.49 -92.71 -0.69 13.15 16 30 H 0.23 4.26 7.50 -2.91 -0.02 4.24 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 1.00 7.78 -2.39 -0.02 0.98 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.37 295.21 3.25 -65.12 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.45 Total: 15.27 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.04 Total: 2.83 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -4.14 Total: -100.50 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.07 Total: 0.70 kcal Total: -68.37 3.25 -65.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191950865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.718 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds