Wall clock time and date at job start Mon Mar 30 2020 01:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46820 * 2 1 4 4 H 1.08998 * 109.47391 * 305.25404 * 3 2 1 5 5 C 1.50699 * 109.46912 * 185.25264 * 3 2 1 6 6 H 1.08004 * 120.00094 * 245.46488 * 5 3 2 7 7 C 1.37875 * 119.99953 * 65.47068 * 5 3 2 8 8 N 1.31510 * 120.00134 * 6.78726 * 7 5 3 9 9 Si 1.86800 * 119.99952 * 186.79059 * 7 5 3 10 10 H 1.48503 * 109.47117 * 94.98419 * 9 7 5 11 11 H 1.48498 * 109.47110 * 214.98605 * 9 7 5 12 12 H 1.48502 * 109.46947 * 334.99070 * 9 7 5 13 13 N 1.46504 * 109.47069 * 65.25547 * 3 2 1 14 14 C 1.34781 * 119.99832 * 274.99470 * 13 3 2 15 15 O 1.21634 * 119.99773 * 5.00706 * 14 13 3 16 16 C 1.47159 * 119.99957 * 185.00108 * 14 13 3 17 17 C 1.38404 * 126.87884 * 355.68854 * 16 14 13 18 18 C 1.39773 * 105.35222 * 179.91409 * 17 16 14 19 19 Cl 1.73599 * 126.08587 * 180.08900 * 18 17 16 20 20 N 1.30927 * 107.83212 * 0.35345 * 18 17 16 21 21 N 1.28440 * 110.92029 * 359.77163 * 20 18 17 22 22 C 1.46497 * 125.17559 * 180.02562 * 21 20 18 23 23 H 1.08998 * 109.47222 * 60.00348 * 1 2 3 24 24 H 1.08996 * 109.47284 * 299.99796 * 1 2 3 25 25 H 1.09009 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46780 * 119.99955 * 2 1 3 27 27 H 1.08997 * 109.46833 * 239.99920 * 2 1 3 28 28 H 0.96997 * 120.00108 * 180.02562 * 8 7 5 29 29 H 0.96997 * 120.00394 * 94.99901 * 13 3 2 30 30 H 1.08004 * 127.32440 * 0.02562 * 17 16 14 31 31 H 1.09001 * 109.46822 * 272.00140 * 22 21 20 32 32 H 1.09001 * 109.47396 * 31.99766 * 22 21 20 33 33 H 1.09000 * 109.47272 * 152.00617 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6018 1.9828 -0.8392 5 6 3.5413 1.4445 -0.1301 6 1 4.1533 1.8075 0.6825 7 6 4.1337 0.9831 -1.2864 8 7 3.3911 0.6669 -2.3247 9 14 5.9911 0.8070 -1.3782 10 1 6.3730 -0.5891 -1.0462 11 1 6.4519 1.1329 -2.7518 12 1 6.6250 1.7372 -0.4096 13 7 1.6576 2.0956 1.2544 14 6 0.4407 2.6624 1.3755 15 8 -0.3730 2.5531 0.4780 16 6 0.0966 3.4132 2.5934 17 6 0.8752 3.5564 3.7287 18 6 0.1214 4.3515 4.5965 19 17 0.5970 4.8664 6.1848 20 7 -1.0097 4.6342 4.0008 21 7 -1.0576 4.1036 2.8321 22 6 -2.1793 4.2213 1.8971 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8078 0.3419 -3.1381 29 1 2.2802 2.1202 1.9979 30 1 1.8573 3.1433 3.9056 31 1 -2.8983 3.4252 2.0903 32 1 -2.6637 5.1886 2.0307 33 1 -1.8105 4.1376 0.8748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192918492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:58 Heat of formation + Delta-G solvation = 11.461129 kcal Electronic energy + Delta-G solvation = -18709.194977 eV Core-core repulsion = 15603.867964 eV Total energy + Delta-G solvation = -3105.327013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.72793 -40.52545 -37.78843 -36.96305 -34.64821 -33.98942 -33.22263 -31.69452 -28.92987 -27.99937 -25.36080 -24.25118 -22.81019 -21.56140 -21.13483 -19.57925 -18.01419 -17.58636 -17.29467 -16.92919 -16.37208 -16.13575 -15.62203 -15.04741 -14.81996 -14.55024 -14.19765 -13.87863 -13.49894 -13.37233 -13.24553 -12.89500 -12.84385 -12.72641 -12.62105 -12.18268 -12.08016 -11.71564 -11.57279 -11.06957 -10.92706 -10.52737 -10.37127 -10.00736 -9.68877 -8.17244 -6.30469 0.11795 0.50901 1.19335 1.47519 1.48426 1.55053 1.59602 2.20096 2.37489 2.56181 3.15772 3.45392 3.69594 4.07430 4.29245 4.35359 4.41818 4.51512 4.58196 4.65347 4.76634 5.04702 5.09951 5.27357 5.42953 5.44401 5.48584 5.62148 5.77294 5.87551 6.07949 6.65254 6.76297 6.86781 7.28082 7.44133 8.91046 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.004999 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.390488 B = 5599.701648 C = 6489.672796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 C 0.281 3.719 4 H 0.012 0.988 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.683 5.683 14 C 0.577 3.423 15 O -0.566 6.566 16 C -0.028 4.028 17 C -0.167 4.167 18 C 0.060 3.940 19 Cl 0.020 6.980 20 N -0.277 5.277 21 N -0.249 5.249 22 C 0.081 3.919 23 H 0.031 0.969 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.193 0.807 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 5.296 12.610 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C 0.178 3.822 4 H 0.029 0.971 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.332 5.332 14 C 0.362 3.638 15 O -0.447 6.447 16 C -0.157 4.157 17 C -0.196 4.196 18 C -0.121 4.121 19 Cl 0.048 6.952 20 N -0.114 5.114 21 N -0.038 5.038 22 C -0.057 4.057 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.210 0.790 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.295 5.780 11.937 15.137 hybrid contribution 1.792 -0.488 -0.124 1.861 sum -5.503 5.292 11.813 14.066 Atomic orbital electron populations 1.21722 0.96535 0.99226 1.00735 1.21733 0.94216 0.98832 1.00633 1.18494 0.93946 0.89230 0.80534 0.97054 1.21541 0.91213 1.43722 1.02117 0.90775 1.25684 1.02847 0.94696 0.94750 1.70097 1.37288 1.44280 1.03619 0.85448 0.79628 0.78679 0.77302 1.19987 1.21542 1.18654 1.46011 1.14244 1.54825 1.18090 1.17030 0.83086 0.79164 0.84554 1.90758 1.49445 1.62175 1.42287 1.21554 0.90755 1.05114 0.98271 1.22340 1.02744 1.03329 0.91193 1.22250 0.93607 1.04081 0.92157 1.98371 1.89681 1.89879 1.17319 1.72992 1.22260 1.20555 0.95594 1.45756 1.14169 1.33340 1.10584 1.22633 0.85707 1.06092 0.91314 0.95026 0.93405 0.93752 0.93362 0.92588 0.92627 0.75792 0.78960 0.88168 0.86424 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.46 71.98 0.61 -4.59 16 2 C -0.11 -5.26 5.50 30.59 0.17 -5.09 16 3 C 0.28 13.39 2.10 44.24 0.09 13.48 16 4 H 0.01 0.66 7.62 -2.39 -0.02 0.64 16 5 C -0.55 -27.33 8.67 25.60 0.22 -27.11 16 6 H 0.07 3.45 7.73 -2.91 -0.02 3.43 16 7 C 0.02 1.08 5.20 84.65 0.44 1.52 16 8 N -0.91 -50.67 12.03 21.45 0.26 -50.41 16 9 Si 0.96 40.55 29.54 68.60 2.03 42.58 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 13 N -0.68 -26.15 5.01 -449.62 -2.25 -28.41 16 14 C 0.58 21.35 6.55 86.59 0.57 21.92 16 15 O -0.57 -23.63 11.45 -4.14 -0.05 -23.68 16 16 C -0.03 -0.87 6.96 40.79 0.28 -0.58 16 17 C -0.17 -4.41 10.50 22.68 0.24 -4.17 16 18 C 0.06 1.61 7.85 85.20 0.67 2.27 16 19 Cl 0.02 0.43 29.32 -2.72 -0.08 0.35 16 20 N -0.28 -7.89 11.90 -49.79 -0.59 -8.48 16 21 N -0.25 -7.13 3.75 -356.03 -1.33 -8.46 16 22 C 0.08 1.82 10.84 127.77 1.38 3.20 16 23 H 0.03 1.41 7.81 -2.39 -0.02 1.39 16 24 H 0.05 1.92 5.52 -2.39 -0.01 1.91 16 25 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 2.88 6.69 -2.39 -0.02 2.86 16 28 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.41 13.15 7.55 -92.71 -0.70 12.45 16 30 H 0.19 3.99 7.58 -2.91 -0.02 3.97 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.10 2.68 6.28 -2.39 -0.01 2.67 16 Total: -1.00 -60.65 294.62 3.10 -57.55 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.45 Total: 18.11 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 4.68 Total: 0.86 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.92 Total: -95.76 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.35 kcal Total: -60.65 3.10 -57.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192918492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.015 kcal (2) G-P(sol) polarization free energy of solvation -60.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds