Wall clock time and date at job start Mon Mar 30 2020 01:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28446 * 125.17781 * 2 1 4 4 C 1.30913 * 110.92125 * 180.02562 * 3 2 1 5 5 Cl 1.73608 * 126.07999 * 179.97438 * 4 3 2 6 6 C 1.39773 * 107.83933 * 0.02562 * 4 3 2 7 7 C 1.36591 * 125.17779 * 180.02562 * 2 1 3 8 8 C 1.47163 * 126.87475 * 0.02562 * 7 2 1 9 9 O 1.21629 * 120.00313 * 355.00375 * 8 7 2 10 10 N 1.34785 * 119.99964 * 174.99283 * 8 7 2 11 11 C 1.46501 * 119.99799 * 185.07736 * 10 8 7 12 12 C 1.53000 * 109.46808 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.46843 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46989 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99866 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00257 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99852 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47284 * 119.99873 * 18 16 14 21 21 H 1.48504 * 109.47342 * 239.99954 * 18 16 14 22 22 H 1.09001 * 109.47507 * 95.56717 * 1 2 3 23 23 H 1.09002 * 109.47413 * 215.56254 * 1 2 3 24 24 H 1.08998 * 109.47747 * 335.56204 * 1 2 3 25 25 H 1.08003 * 127.32756 * 179.97438 * 6 4 3 26 26 H 0.96996 * 119.99885 * 5.08577 * 10 8 7 27 27 H 1.09003 * 109.47487 * 300.00665 * 11 10 8 28 28 H 1.08998 * 109.47335 * 60.00436 * 11 10 8 29 29 H 1.08999 * 109.47405 * 299.99853 * 12 11 10 30 30 H 1.08995 * 109.47463 * 60.00332 * 12 11 10 31 31 H 1.08995 * 109.46961 * 299.99508 * 13 12 11 32 32 H 1.08998 * 109.47478 * 59.99771 * 13 12 11 33 33 H 0.97006 * 120.00466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2049 1.0499 0.0000 4 6 3.4737 0.7275 -0.0005 5 17 4.8102 1.8356 -0.0014 6 6 3.5611 -0.6675 -0.0015 7 6 2.2518 -1.1165 -0.0005 8 6 1.7984 -2.5165 -0.0017 9 8 0.6127 -2.7718 0.0895 10 7 2.6970 -3.5158 -0.1039 11 6 2.2399 -4.9031 -0.2171 12 6 3.4511 -5.8324 -0.3179 13 6 2.9738 -7.2812 -0.4368 14 6 4.1668 -8.1967 -0.5354 15 1 5.1656 -7.7862 -0.5157 16 6 3.9832 -9.5582 -0.6518 17 7 2.7671 -10.0580 -0.6763 18 14 5.4620 -10.6929 -0.7748 19 1 6.7090 -9.8881 -0.7247 20 1 5.4456 -11.6521 0.3587 21 1 5.4071 -11.4405 -2.0568 22 1 -0.3634 -0.0997 -1.0228 23 1 -0.3634 -0.8360 0.5977 24 1 -0.3634 0.9355 0.4251 25 1 4.4591 -1.2675 -0.0026 26 1 3.6462 -3.3165 -0.1024 27 1 1.6533 -5.1655 0.6633 28 1 1.6236 -5.0109 -1.1096 29 1 4.0380 -5.5703 -1.1982 30 1 4.0671 -5.7246 0.5748 31 1 2.3867 -7.5437 0.4433 32 1 2.3580 -7.3888 -1.3297 33 1 2.6379 -11.0160 -0.7579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192922036.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:10 Heat of formation + Delta-G solvation = -0.025010 kcal Electronic energy + Delta-G solvation = -17578.344284 eV Core-core repulsion = 14472.519195 eV Total energy + Delta-G solvation = -3105.825089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.80245 -40.56250 -37.80814 -37.04352 -35.32578 -34.25766 -33.30519 -31.99043 -28.68179 -28.01853 -25.55107 -23.96231 -22.63993 -22.30637 -21.12936 -19.23025 -18.45481 -17.64954 -17.42552 -16.77991 -16.57828 -16.44255 -15.89274 -15.30255 -15.09662 -14.87606 -14.27924 -14.22409 -13.73221 -13.52884 -13.45115 -12.88174 -12.78490 -12.75319 -12.53347 -12.33663 -11.76498 -11.65412 -11.64138 -11.26238 -11.08977 -10.54253 -10.53345 -10.13979 -10.03622 -8.17635 -6.28259 -0.00678 0.47652 1.13692 1.41795 1.43435 1.44699 1.56872 1.98608 2.18193 2.44330 3.16859 3.33496 3.52328 3.97322 4.15742 4.24450 4.25813 4.31237 4.34857 4.57865 4.61090 4.95004 4.97435 5.00093 5.20692 5.33422 5.37556 5.55619 5.74821 5.87696 6.24459 6.33465 6.65400 6.89958 6.97893 7.41479 8.94505 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028416 B = 0.003091 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.138828 B = 9056.684575 C =10006.168407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.249 5.249 3 N -0.276 5.276 4 C 0.057 3.943 5 Cl 0.019 6.981 6 C -0.159 4.159 7 C -0.035 4.035 8 C 0.589 3.411 9 O -0.569 6.569 10 N -0.694 5.694 11 C 0.132 3.868 12 C -0.104 4.104 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.964 3.036 19 H -0.258 1.258 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.099 0.901 23 H 0.105 0.895 24 H 0.119 0.881 25 H 0.201 0.799 26 H 0.419 0.581 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.070 0.930 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 22.783 1.408 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.038 5.038 3 N -0.113 5.113 4 C -0.124 4.124 5 Cl 0.047 6.953 6 C -0.188 4.188 7 C -0.163 4.163 8 C 0.375 3.625 9 O -0.448 6.448 10 N -0.345 5.345 11 C 0.009 3.991 12 C -0.142 4.142 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.789 3.211 19 H -0.182 1.182 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.117 0.883 23 H 0.124 0.876 24 H 0.138 0.862 25 H 0.218 0.782 26 H 0.256 0.744 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.069 23.434 1.441 23.478 hybrid contribution 1.272 -1.334 -0.100 1.846 sum 1.203 22.099 1.341 22.173 Atomic orbital electron populations 1.22646 0.70147 1.06919 1.06116 1.45796 1.08872 1.00859 1.48287 1.73043 1.03260 1.14203 1.20797 1.22321 0.88767 0.90880 1.10427 1.98388 1.38109 1.61577 1.97252 1.22416 0.96906 0.92862 1.06583 1.21363 0.91374 0.89587 1.14008 1.16957 0.85560 0.83345 0.76654 1.90793 1.17428 1.84848 1.51779 1.45646 1.10490 1.05894 1.72502 1.21368 0.97663 0.78737 1.01376 1.21623 0.96084 0.94122 1.02381 1.18947 0.95682 0.91622 0.95217 1.21731 0.94027 0.92284 1.49617 0.91491 1.25982 0.98679 1.00413 0.94981 1.70107 1.22759 1.13020 1.51663 0.85410 0.79624 0.78554 0.77519 1.18161 1.20742 1.20743 0.88288 0.87639 0.86250 0.78228 0.74369 0.92322 0.92251 0.91100 0.91141 0.98788 0.98752 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.71 127.77 1.37 2.69 16 2 N -0.25 -5.53 3.75 -356.04 -1.33 -6.87 16 3 N -0.28 -6.39 11.90 -49.79 -0.59 -6.99 16 4 C 0.06 1.20 7.85 85.20 0.67 1.87 16 5 Cl 0.02 0.33 29.33 -2.72 -0.08 0.25 16 6 C -0.16 -2.99 10.50 22.68 0.24 -2.75 16 7 C -0.03 -0.79 6.96 40.79 0.28 -0.50 16 8 C 0.59 15.64 7.79 86.59 0.67 16.31 16 9 O -0.57 -18.42 14.80 -4.12 -0.06 -18.48 16 10 N -0.69 -16.96 5.54 -466.62 -2.59 -19.54 16 11 C 0.13 4.13 5.68 86.38 0.49 4.62 16 12 C -0.10 -3.67 5.27 30.60 0.16 -3.51 16 13 C 0.02 1.14 4.97 29.85 0.15 1.29 16 14 C -0.54 -29.03 9.11 25.60 0.23 -28.80 16 15 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 17 N -0.93 -55.88 13.29 21.44 0.28 -55.59 16 18 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.11 1.96 6.54 -2.39 -0.02 1.94 16 24 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.20 2.41 7.58 -2.91 -0.02 2.39 16 26 H 0.42 7.55 7.50 -92.71 -0.70 6.85 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -67.80 306.57 2.82 -64.98 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.44 Total: 5.83 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.73 Total: -8.49 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -4.23 Total: -88.99 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.48 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.25 kcal Total: -67.80 2.82 -64.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192922036.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.950 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds