Wall clock time and date at job start Mon Mar 30 2020 00:49:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46898 * 111.00443 * 2 1
4 4 C 1.39503 * 110.99875 * 236.04574 * 2 1 3
5 5 C 1.39225 * 120.88126 * 60.00069 * 4 2 1
6 6 C 1.38051 * 119.14928 * 180.02562 * 5 4 2
7 7 N 1.31937 * 120.97173 * 0.02562 * 6 5 4
8 8 C 1.32021 * 121.94915 * 359.97438 * 7 6 5
9 9 C 1.38484 * 120.73486 * 359.72344 * 8 7 6
10 10 N 1.40069 * 120.52149 * 180.28810 * 9 8 7
11 11 S 1.65601 * 119.99882 * 35.26413 * 10 9 8
12 12 O 1.42094 * 106.40221 * 178.54335 * 11 10 9
13 13 O 1.42100 * 106.40215 * 311.46592 * 11 10 9
14 14 C 1.76199 * 107.21623 * 65.00295 * 11 10 9
15 15 H 1.08001 * 120.00251 * 0.02562 * 14 11 10
16 16 C 1.37881 * 120.00026 * 179.97438 * 14 11 10
17 17 N 1.31519 * 119.99981 * 180.02562 * 16 14 11
18 18 Si 1.86800 * 119.99797 * 359.97438 * 16 14 11
19 19 H 1.48504 * 109.46503 * 90.00312 * 18 16 14
20 20 H 1.48497 * 109.47138 * 209.99951 * 18 16 14
21 21 H 1.48490 * 109.47266 * 330.00291 * 18 16 14
22 22 H 1.09002 * 109.47401 * 183.95136 * 1 2 3
23 23 H 1.09001 * 109.46874 * 63.95149 * 1 2 3
24 24 H 1.09004 * 109.46970 * 303.95282 * 1 2 3
25 25 H 1.09007 * 109.46909 * 60.00094 * 3 2 1
26 26 H 1.08998 * 109.47110 * 179.97438 * 3 2 1
27 27 H 1.09002 * 109.47061 * 300.00284 * 3 2 1
28 28 H 1.08002 * 120.42813 * 359.97438 * 5 4 2
29 29 H 1.07996 * 119.51787 * 179.97438 * 6 5 4
30 30 H 1.07996 * 119.63096 * 180.02562 * 8 7 6
31 31 H 0.96995 * 120.00152 * 215.27005 * 10 9 8
32 32 H 0.96992 * 119.99823 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9956 1.3714 0.0000
4 6 1.9689 -0.7274 -1.0803
5 6 1.6672 -0.3613 -2.3892
6 6 2.1808 -1.1069 -3.4314
7 7 2.9483 -2.1554 -3.2025
8 6 3.2602 -2.5388 -1.9783
9 6 2.7914 -1.8419 -0.8773
10 7 3.1301 -2.2492 0.4194
11 16 4.6273 -2.8888 0.7219
12 8 4.6714 -3.1657 2.1149
13 8 4.8502 -3.8771 -0.2745
14 6 5.8078 -1.6135 0.4305
15 1 5.4784 -0.6346 0.1148
16 6 7.1520 -1.8650 0.6065
17 7 8.0330 -0.9130 0.3894
18 14 7.7215 -3.5575 1.1546
19 1 7.9730 -4.4054 -0.0384
20 1 8.9737 -3.4274 1.9422
21 1 6.6708 -4.1851 1.9954
22 1 -0.3634 -1.0252 0.0708
23 1 -0.3633 0.4513 -0.9233
24 1 -0.3633 0.5740 0.8525
25 1 1.6461 1.8947 0.8901
26 1 3.0851 1.3422 0.0005
27 1 1.6460 1.8948 -0.8900
28 1 1.0389 0.4946 -2.5868
29 1 1.9502 -0.8284 -4.4491
30 1 3.8920 -3.4028 -1.8341
31 1 2.4876 -2.1567 1.1402
32 1 8.9786 -1.0900 0.5129
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192935500.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:49:49
Heat of formation + Delta-G solvation = -24.128990 kcal
Electronic energy + Delta-G solvation = -19389.368331 eV
Core-core repulsion = 16284.541722 eV
Total energy + Delta-G solvation = -3104.826610 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.078 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.33935 -37.13224 -35.90711 -34.86206 -34.63742 -33.08763 -30.75464 -28.93972
-27.62680 -26.48435 -25.02896 -22.83477 -21.41654 -19.28764 -17.86559 -17.49706
-16.90773 -16.74874 -15.72873 -15.30917 -14.99257 -14.43350 -14.26840 -13.94092
-13.70674 -13.46512 -13.29493 -12.92261 -12.53170 -12.39162 -12.03488 -11.72016
-11.63792 -11.41833 -11.10771 -10.73493 -10.68951 -10.46255 -9.94568 -9.26927
-9.26037 -9.20214 -9.12092 -8.58090 -7.94627 -6.85313 -5.41449 1.37596
1.40874 1.89195 3.03841 3.14878 3.22230 3.75653 3.90275 4.05709
4.08017 4.53975 4.81850 4.98489 5.06305 5.16172 5.21264 5.25599
5.36991 5.46277 5.49414 5.73213 5.83123 5.88596 5.98027 6.14211
6.24512 6.55700 6.81461 6.93881 7.27333 7.42391 7.59398 8.15426
8.32573 8.63529 10.26829
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.023958 B = 0.007492 C = 0.007126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1168.447613 B = 3736.549144 C = 3928.084219
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 N -0.504 5.504
3 C 0.029 3.971
4 C 0.093 3.907
5 C -0.185 4.185
6 C 0.072 3.928
7 N -0.459 5.459
8 C 0.065 3.935
9 C 0.157 3.843
10 N -1.041 6.041
11 S 2.666 3.334
12 O -0.995 6.995
13 O -1.001 7.001
14 C -1.008 5.008
15 H 0.122 0.878
16 C 0.154 3.846
17 N -0.818 5.818
18 Si 0.801 3.199
19 H -0.243 1.243
20 H -0.254 1.254
21 H -0.221 1.221
22 H 0.069 0.931
23 H 0.031 0.969
24 H 0.074 0.926
25 H 0.074 0.926
26 H 0.078 0.922
27 H 0.030 0.970
28 H 0.128 0.872
29 H 0.152 0.848
30 H 0.202 0.798
31 H 0.421 0.579
32 H 0.282 0.718
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.939 3.226 -2.749 13.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.225 5.225
3 C -0.118 4.118
4 C -0.013 4.013
5 C -0.207 4.207
6 C -0.086 4.086
7 N -0.167 5.167
8 C -0.096 4.096
9 C 0.055 3.945
10 N -0.785 5.785
11 S 2.769 3.231
12 O -0.985 6.985
13 O -0.990 6.990
14 C -1.143 5.143
15 H 0.140 0.860
16 C -0.066 4.066
17 N -0.446 5.446
18 Si 0.621 3.379
19 H -0.167 1.167
20 H -0.177 1.177
21 H -0.143 1.143
22 H 0.088 0.912
23 H 0.049 0.951
24 H 0.093 0.907
25 H 0.093 0.907
26 H 0.097 0.903
27 H 0.049 0.951
28 H 0.146 0.854
29 H 0.169 0.831
30 H 0.218 0.782
31 H 0.256 0.744
32 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -11.996 1.667 -2.765 12.423
hybrid contribution -0.301 1.280 0.406 1.376
sum -12.297 2.946 -2.359 12.863
Atomic orbital electron populations
1.22480 0.86015 1.02646 1.00851 1.59338 1.08127 1.14602 1.40458
1.22472 1.01895 0.86635 1.00752 1.18943 0.99319 0.93676 0.89405
1.22389 1.03066 1.01911 0.93347 1.22532 0.94898 0.92181 0.98995
1.67801 1.11288 1.14447 1.23184 1.24165 0.99217 1.00330 0.85895
1.18520 0.97265 0.92702 0.85993 1.53428 1.34148 1.78170 1.12742
1.01822 0.72353 0.75481 0.73396 1.93502 1.85581 1.86012 1.33404
1.93308 1.84187 1.61002 1.60543 1.30235 1.05271 1.16593 1.62249
0.86013 1.24407 0.95356 0.97293 0.89520 1.69975 1.03042 1.32790
1.38838 0.87869 0.83730 0.84111 0.82218 1.16685 1.17748 1.14266
0.91207 0.95078 0.90748 0.90691 0.90343 0.95118 0.85380 0.83083
0.78214 0.74354 0.90754
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 9.35 60.07 0.56 0.85 16
2 N -0.50 -7.03 4.60 -186.46 -0.86 -7.89 16
3 C 0.03 0.37 9.34 60.06 0.56 0.93 16
4 C 0.09 1.49 4.76 -83.34 -0.40 1.09 16
5 C -0.18 -2.56 8.73 -39.28 -0.34 -2.91 16
6 C 0.07 1.07 11.17 -17.57 -0.20 0.88 16
7 N -0.46 -8.44 10.36 -13.18 -0.14 -8.57 16
8 C 0.06 1.30 10.41 -17.38 -0.18 1.12 16
9 C 0.16 2.99 6.39 -83.34 -0.53 2.46 16
10 N -1.04 -20.51 5.67 32.62 0.18 -20.33 16
11 S 2.67 65.00 4.09 -107.50 -0.44 64.56 16
12 O -0.99 -25.97 16.02 -57.17 -0.92 -26.89 16
13 O -1.00 -25.20 13.56 -57.17 -0.78 -25.97 16
14 C -1.01 -27.76 10.22 30.60 0.31 -27.45 16
15 H 0.12 3.45 8.06 -52.49 -0.42 3.03 16
16 C 0.15 4.37 5.47 -17.82 -0.10 4.27 16
17 N -0.82 -23.33 13.96 55.43 0.77 -22.56 16
18 Si 0.80 20.14 26.54 -169.99 -4.51 15.63 16
19 H -0.24 -5.95 7.11 56.52 0.40 -5.55 16
20 H -0.25 -5.87 7.11 56.52 0.40 -5.47 16
21 H -0.22 -5.61 5.60 56.52 0.32 -5.29 16
22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
23 H 0.03 0.29 7.20 -51.93 -0.37 -0.08 16
24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
25 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16
26 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16
27 H 0.03 0.33 7.56 -51.93 -0.39 -0.06 16
28 H 0.13 1.39 7.21 -52.49 -0.38 1.01 16
29 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16
30 H 0.20 4.33 5.04 -52.49 -0.26 4.07 16
31 H 0.42 7.24 8.73 -34.47 -0.30 6.94 16
32 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16
LS Contribution 283.14 15.07 4.27 4.27
Total: -1.00 -31.85 283.14 -6.19 -38.04
By element:
Atomic # 1 Polarization: 11.93 SS G_CDS: -3.47 Total: 8.47 kcal
Atomic # 6 Polarization: -18.45 SS G_CDS: -0.31 Total: -18.76 kcal
Atomic # 7 Polarization: -59.31 SS G_CDS: -0.04 Total: -59.35 kcal
Atomic # 8 Polarization: -51.17 SS G_CDS: -1.69 Total: -52.86 kcal
Atomic # 14 Polarization: 20.14 SS G_CDS: -4.51 Total: 15.63 kcal
Atomic # 16 Polarization: 65.00 SS G_CDS: -0.44 Total: 64.56 kcal
Total LS contribution 4.27 Total: 4.27 kcal
Total: -31.85 -6.19 -38.04 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192935500.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal
(2) G-P(sol) polarization free energy of solvation -31.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.942 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds