Wall clock time and date at job start Mon Mar 30 2020 00:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39503 * 110.99875 * 236.04574 * 2 1 3 5 5 C 1.39225 * 120.88126 * 60.00069 * 4 2 1 6 6 C 1.38051 * 119.14928 * 180.02562 * 5 4 2 7 7 N 1.31937 * 120.97173 * 0.02562 * 6 5 4 8 8 C 1.32021 * 121.94915 * 359.97438 * 7 6 5 9 9 C 1.38484 * 120.73486 * 359.72344 * 8 7 6 10 10 N 1.40069 * 120.52149 * 180.28810 * 9 8 7 11 11 S 1.65601 * 119.99882 * 35.26413 * 10 9 8 12 12 O 1.42094 * 106.40221 * 178.54335 * 11 10 9 13 13 O 1.42100 * 106.40215 * 311.46592 * 11 10 9 14 14 C 1.76199 * 107.21623 * 65.00295 * 11 10 9 15 15 H 1.08001 * 120.00251 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00026 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99981 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 119.99797 * 359.97438 * 16 14 11 19 19 H 1.48504 * 109.46503 * 90.00312 * 18 16 14 20 20 H 1.48497 * 109.47138 * 209.99951 * 18 16 14 21 21 H 1.48490 * 109.47266 * 330.00291 * 18 16 14 22 22 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 23 23 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 24 24 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 25 25 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 26 26 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 28 28 H 1.08002 * 120.42813 * 359.97438 * 5 4 2 29 29 H 1.07996 * 119.51787 * 179.97438 * 6 5 4 30 30 H 1.07996 * 119.63096 * 180.02562 * 8 7 6 31 31 H 0.96995 * 120.00152 * 215.27005 * 10 9 8 32 32 H 0.96992 * 119.99823 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9689 -0.7274 -1.0803 5 6 1.6672 -0.3613 -2.3892 6 6 2.1808 -1.1069 -3.4314 7 7 2.9483 -2.1554 -3.2025 8 6 3.2602 -2.5388 -1.9783 9 6 2.7914 -1.8419 -0.8773 10 7 3.1301 -2.2492 0.4194 11 16 4.6273 -2.8888 0.7219 12 8 4.6714 -3.1657 2.1149 13 8 4.8502 -3.8771 -0.2745 14 6 5.8078 -1.6135 0.4305 15 1 5.4784 -0.6346 0.1148 16 6 7.1520 -1.8650 0.6065 17 7 8.0330 -0.9130 0.3894 18 14 7.7215 -3.5575 1.1546 19 1 7.9730 -4.4054 -0.0384 20 1 8.9737 -3.4274 1.9422 21 1 6.6708 -4.1851 1.9954 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.4513 -0.9233 24 1 -0.3633 0.5740 0.8525 25 1 1.6461 1.8947 0.8901 26 1 3.0851 1.3422 0.0005 27 1 1.6460 1.8948 -0.8900 28 1 1.0389 0.4946 -2.5868 29 1 1.9502 -0.8284 -4.4491 30 1 3.8920 -3.4028 -1.8341 31 1 2.4876 -2.1567 1.1402 32 1 8.9786 -1.0900 0.5129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935500.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:49 Heat of formation + Delta-G solvation = -24.128990 kcal Electronic energy + Delta-G solvation = -19389.368331 eV Core-core repulsion = 16284.541722 eV Total energy + Delta-G solvation = -3104.826610 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33935 -37.13224 -35.90711 -34.86206 -34.63742 -33.08763 -30.75464 -28.93972 -27.62680 -26.48435 -25.02896 -22.83477 -21.41654 -19.28764 -17.86559 -17.49706 -16.90773 -16.74874 -15.72873 -15.30917 -14.99257 -14.43350 -14.26840 -13.94092 -13.70674 -13.46512 -13.29493 -12.92261 -12.53170 -12.39162 -12.03488 -11.72016 -11.63792 -11.41833 -11.10771 -10.73493 -10.68951 -10.46255 -9.94568 -9.26927 -9.26037 -9.20214 -9.12092 -8.58090 -7.94627 -6.85313 -5.41449 1.37596 1.40874 1.89195 3.03841 3.14878 3.22230 3.75653 3.90275 4.05709 4.08017 4.53975 4.81850 4.98489 5.06305 5.16172 5.21264 5.25599 5.36991 5.46277 5.49414 5.73213 5.83123 5.88596 5.98027 6.14211 6.24512 6.55700 6.81461 6.93881 7.27333 7.42391 7.59398 8.15426 8.32573 8.63529 10.26829 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.007492 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.447613 B = 3736.549144 C = 3928.084219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.504 5.504 3 C 0.029 3.971 4 C 0.093 3.907 5 C -0.185 4.185 6 C 0.072 3.928 7 N -0.459 5.459 8 C 0.065 3.935 9 C 0.157 3.843 10 N -1.041 6.041 11 S 2.666 3.334 12 O -0.995 6.995 13 O -1.001 7.001 14 C -1.008 5.008 15 H 0.122 0.878 16 C 0.154 3.846 17 N -0.818 5.818 18 Si 0.801 3.199 19 H -0.243 1.243 20 H -0.254 1.254 21 H -0.221 1.221 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.128 0.872 29 H 0.152 0.848 30 H 0.202 0.798 31 H 0.421 0.579 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 3.226 -2.749 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.225 5.225 3 C -0.118 4.118 4 C -0.013 4.013 5 C -0.207 4.207 6 C -0.086 4.086 7 N -0.167 5.167 8 C -0.096 4.096 9 C 0.055 3.945 10 N -0.785 5.785 11 S 2.769 3.231 12 O -0.985 6.985 13 O -0.990 6.990 14 C -1.143 5.143 15 H 0.140 0.860 16 C -0.066 4.066 17 N -0.446 5.446 18 Si 0.621 3.379 19 H -0.167 1.167 20 H -0.177 1.177 21 H -0.143 1.143 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.146 0.854 29 H 0.169 0.831 30 H 0.218 0.782 31 H 0.256 0.744 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.996 1.667 -2.765 12.423 hybrid contribution -0.301 1.280 0.406 1.376 sum -12.297 2.946 -2.359 12.863 Atomic orbital electron populations 1.22480 0.86015 1.02646 1.00851 1.59338 1.08127 1.14602 1.40458 1.22472 1.01895 0.86635 1.00752 1.18943 0.99319 0.93676 0.89405 1.22389 1.03066 1.01911 0.93347 1.22532 0.94898 0.92181 0.98995 1.67801 1.11288 1.14447 1.23184 1.24165 0.99217 1.00330 0.85895 1.18520 0.97265 0.92702 0.85993 1.53428 1.34148 1.78170 1.12742 1.01822 0.72353 0.75481 0.73396 1.93502 1.85581 1.86012 1.33404 1.93308 1.84187 1.61002 1.60543 1.30235 1.05271 1.16593 1.62249 0.86013 1.24407 0.95356 0.97293 0.89520 1.69975 1.03042 1.32790 1.38838 0.87869 0.83730 0.84111 0.82218 1.16685 1.17748 1.14266 0.91207 0.95078 0.90748 0.90691 0.90343 0.95118 0.85380 0.83083 0.78214 0.74354 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.35 60.07 0.56 0.85 16 2 N -0.50 -7.03 4.60 -186.46 -0.86 -7.89 16 3 C 0.03 0.37 9.34 60.06 0.56 0.93 16 4 C 0.09 1.49 4.76 -83.34 -0.40 1.09 16 5 C -0.18 -2.56 8.73 -39.28 -0.34 -2.91 16 6 C 0.07 1.07 11.17 -17.57 -0.20 0.88 16 7 N -0.46 -8.44 10.36 -13.18 -0.14 -8.57 16 8 C 0.06 1.30 10.41 -17.38 -0.18 1.12 16 9 C 0.16 2.99 6.39 -83.34 -0.53 2.46 16 10 N -1.04 -20.51 5.67 32.62 0.18 -20.33 16 11 S 2.67 65.00 4.09 -107.50 -0.44 64.56 16 12 O -0.99 -25.97 16.02 -57.17 -0.92 -26.89 16 13 O -1.00 -25.20 13.56 -57.17 -0.78 -25.97 16 14 C -1.01 -27.76 10.22 30.60 0.31 -27.45 16 15 H 0.12 3.45 8.06 -52.49 -0.42 3.03 16 16 C 0.15 4.37 5.47 -17.82 -0.10 4.27 16 17 N -0.82 -23.33 13.96 55.43 0.77 -22.56 16 18 Si 0.80 20.14 26.54 -169.99 -4.51 15.63 16 19 H -0.24 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.25 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.22 -5.61 5.60 56.52 0.32 -5.29 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.03 0.29 7.20 -51.93 -0.37 -0.08 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 27 H 0.03 0.33 7.56 -51.93 -0.39 -0.06 16 28 H 0.13 1.39 7.21 -52.49 -0.38 1.01 16 29 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.20 4.33 5.04 -52.49 -0.26 4.07 16 31 H 0.42 7.24 8.73 -34.47 -0.30 6.94 16 32 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 283.14 15.07 4.27 4.27 Total: -1.00 -31.85 283.14 -6.19 -38.04 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -3.47 Total: 8.47 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.31 Total: -18.76 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.04 Total: -59.35 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -1.69 Total: -52.86 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.51 Total: 15.63 kcal Atomic # 16 Polarization: 65.00 SS G_CDS: -0.44 Total: 64.56 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.85 -6.19 -38.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935500.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds