Wall clock time and date at job start Mon Mar 30 2020 00:49:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46898 * 111.00443 * 2 1
4 4 C 1.39503 * 110.99875 * 236.04574 * 2 1 3
5 5 C 1.39225 * 120.88126 * 60.00069 * 4 2 1
6 6 C 1.38051 * 119.14928 * 180.02562 * 5 4 2
7 7 N 1.31937 * 120.97173 * 0.02562 * 6 5 4
8 8 C 1.32021 * 121.94915 * 359.97438 * 7 6 5
9 9 C 1.38484 * 120.73486 * 359.72344 * 8 7 6
10 10 N 1.40069 * 120.52149 * 180.28810 * 9 8 7
11 11 S 1.65601 * 119.99882 * 35.26413 * 10 9 8
12 12 O 1.42094 * 106.40221 * 178.54335 * 11 10 9
13 13 O 1.42100 * 106.40215 * 311.46592 * 11 10 9
14 14 C 1.76199 * 107.21623 * 65.00295 * 11 10 9
15 15 H 1.08001 * 120.00251 * 0.02562 * 14 11 10
16 16 C 1.37881 * 120.00026 * 179.97438 * 14 11 10
17 17 N 1.31519 * 119.99981 * 180.02562 * 16 14 11
18 18 Si 1.86800 * 119.99797 * 359.97438 * 16 14 11
19 19 H 1.48504 * 109.46503 * 90.00312 * 18 16 14
20 20 H 1.48497 * 109.47138 * 209.99951 * 18 16 14
21 21 H 1.48490 * 109.47266 * 330.00291 * 18 16 14
22 22 H 1.09002 * 109.47401 * 183.95136 * 1 2 3
23 23 H 1.09001 * 109.46874 * 63.95149 * 1 2 3
24 24 H 1.09004 * 109.46970 * 303.95282 * 1 2 3
25 25 H 1.09007 * 109.46909 * 60.00094 * 3 2 1
26 26 H 1.08998 * 109.47110 * 179.97438 * 3 2 1
27 27 H 1.09002 * 109.47061 * 300.00284 * 3 2 1
28 28 H 1.08002 * 120.42813 * 359.97438 * 5 4 2
29 29 H 1.07996 * 119.51787 * 179.97438 * 6 5 4
30 30 H 1.07996 * 119.63096 * 180.02562 * 8 7 6
31 31 H 0.96995 * 120.00152 * 215.27005 * 10 9 8
32 32 H 0.96992 * 119.99823 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9956 1.3714 0.0000
4 6 1.9689 -0.7274 -1.0803
5 6 1.6672 -0.3613 -2.3892
6 6 2.1808 -1.1069 -3.4314
7 7 2.9483 -2.1554 -3.2025
8 6 3.2602 -2.5388 -1.9783
9 6 2.7914 -1.8419 -0.8773
10 7 3.1301 -2.2492 0.4194
11 16 4.6273 -2.8888 0.7219
12 8 4.6714 -3.1657 2.1149
13 8 4.8502 -3.8771 -0.2745
14 6 5.8078 -1.6135 0.4305
15 1 5.4784 -0.6346 0.1148
16 6 7.1520 -1.8650 0.6065
17 7 8.0330 -0.9130 0.3894
18 14 7.7215 -3.5575 1.1546
19 1 7.9730 -4.4054 -0.0384
20 1 8.9737 -3.4274 1.9422
21 1 6.6708 -4.1851 1.9954
22 1 -0.3634 -1.0252 0.0708
23 1 -0.3633 0.4513 -0.9233
24 1 -0.3633 0.5740 0.8525
25 1 1.6461 1.8947 0.8901
26 1 3.0851 1.3422 0.0005
27 1 1.6460 1.8948 -0.8900
28 1 1.0389 0.4946 -2.5868
29 1 1.9502 -0.8284 -4.4491
30 1 3.8920 -3.4028 -1.8341
31 1 2.4876 -2.1567 1.1402
32 1 8.9786 -1.0900 0.5129
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192935500.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:49:49
Heat of formation + Delta-G solvation = -50.672592 kcal
Electronic energy + Delta-G solvation = -19390.519348 eV
Core-core repulsion = 16284.541722 eV
Total energy + Delta-G solvation = -3105.977627 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.078 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.60410 -38.29945 -37.83729 -36.68303 -36.34900 -35.22052 -31.95578 -30.33299
-28.62821 -28.50336 -26.15199 -24.17947 -22.60282 -21.19920 -19.75657 -18.99124
-18.72072 -17.95572 -17.31907 -17.06607 -16.21970 -16.02334 -15.59759 -15.47940
-15.18524 -15.00612 -14.79993 -14.61058 -14.03459 -13.54988 -13.34099 -13.21436
-13.03062 -12.95244 -12.70109 -12.65481 -12.50847 -12.22798 -11.83490 -11.35762
-11.22611 -10.56934 -10.40535 -9.57524 -9.40158 -8.99166 -7.57527 -0.19254
0.10287 0.29761 1.04438 1.14730 1.20169 1.87383 2.26136 2.40364
2.71445 2.78844 3.13096 3.61121 3.83110 3.93173 3.96495 4.09855
4.34821 4.38850 4.48068 4.62552 4.68212 4.78916 4.94689 4.99045
5.00358 5.18687 5.34575 5.57601 5.88970 5.94912 6.04287 6.26306
6.48612 7.01495 8.18547
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.023958 B = 0.007492 C = 0.007126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1168.447613 B = 3736.549144 C = 3928.084219
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.524 5.524
3 C 0.029 3.971
4 C 0.101 3.899
5 C -0.171 4.171
6 C 0.079 3.921
7 N -0.483 5.483
8 C 0.037 3.963
9 C 0.124 3.876
10 N -1.029 6.029
11 S 2.693 3.307
12 O -1.014 7.014
13 O -1.011 7.011
14 C -1.030 5.030
15 H 0.100 0.900
16 C 0.110 3.890
17 N -0.850 5.850
18 Si 0.825 3.175
19 H -0.235 1.235
20 H -0.218 1.218
21 H -0.227 1.227
22 H 0.066 0.934
23 H 0.050 0.950
24 H 0.093 0.907
25 H 0.095 0.905
26 H 0.044 0.956
27 H 0.054 0.946
28 H 0.172 0.828
29 H 0.194 0.806
30 H 0.175 0.825
31 H 0.432 0.568
32 H 0.292 0.708
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.877 4.253 -3.321 15.826
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.246 5.246
3 C -0.117 4.117
4 C -0.005 4.005
5 C -0.193 4.193
6 C -0.080 4.080
7 N -0.192 5.192
8 C -0.123 4.123
9 C 0.023 3.977
10 N -0.778 5.778
11 S 2.795 3.205
12 O -1.004 7.004
13 O -1.001 7.001
14 C -1.163 5.163
15 H 0.118 0.882
16 C -0.107 4.107
17 N -0.479 5.479
18 Si 0.641 3.359
19 H -0.159 1.159
20 H -0.140 1.140
21 H -0.149 1.149
22 H 0.085 0.915
23 H 0.069 0.931
24 H 0.112 0.888
25 H 0.114 0.886
26 H 0.063 0.937
27 H 0.072 0.928
28 H 0.189 0.811
29 H 0.211 0.789
30 H 0.191 0.809
31 H 0.270 0.730
32 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -13.912 2.708 -3.324 14.557
hybrid contribution 0.131 1.109 0.472 1.212
sum -13.781 3.816 -2.852 14.581
Atomic orbital electron populations
1.22584 0.83458 1.03152 1.02767 1.59315 1.10341 1.15105 1.39857
1.22494 0.99910 0.86326 1.02983 1.19147 0.97731 0.92478 0.91152
1.22802 1.02224 1.02373 0.91868 1.23293 0.92863 0.90527 1.01340
1.67771 1.12805 1.16304 1.22340 1.23807 1.00498 1.00705 0.87246
1.18676 0.99462 0.94674 0.84866 1.52798 1.32598 1.78534 1.13858
1.00859 0.72594 0.74532 0.72525 1.93464 1.86454 1.86131 1.34375
1.93308 1.85008 1.61028 1.60725 1.30713 1.06638 1.16995 1.61945
0.88187 1.25159 0.95745 1.00115 0.89700 1.70002 1.03883 1.34261
1.39804 0.87487 0.84789 0.80896 0.82680 1.15852 1.14037 1.14944
0.91511 0.93123 0.88800 0.88598 0.93671 0.92796 0.81106 0.78932
0.80863 0.73034 0.89701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.46 9.35 127.69 1.19 1.65 16
2 N -0.52 -13.36 4.60 -743.82 -3.42 -16.78 16
3 C 0.03 0.66 9.34 127.69 1.19 1.85 16
4 C 0.10 3.06 4.76 38.58 0.18 3.25 16
5 C -0.17 -4.12 8.73 22.46 0.20 -3.92 16
6 C 0.08 2.10 11.17 84.63 0.95 3.05 16
7 N -0.48 -17.49 10.36 -195.60 -2.03 -19.52 16
8 C 0.04 1.52 10.41 84.72 0.88 2.40 16
9 C 0.12 4.74 6.39 38.31 0.24 4.99 16
10 N -1.03 -41.18 5.67 -50.71 -0.29 -41.47 16
11 S 2.69 134.18 4.09 -56.49 -0.23 133.95 16
12 O -1.01 -53.49 16.02 -128.00 -2.05 -55.54 16
13 O -1.01 -52.26 13.56 -128.00 -1.74 -53.99 16
14 C -1.03 -58.53 10.22 67.74 0.69 -57.84 16
15 H 0.10 5.94 8.06 -2.91 -0.02 5.92 16
16 C 0.11 6.34 5.47 84.66 0.46 6.81 16
17 N -0.85 -49.32 13.96 21.45 0.30 -49.02 16
18 Si 0.83 40.79 26.54 68.60 1.82 42.61 16
19 H -0.24 -11.26 7.11 99.48 0.71 -10.55 16
20 H -0.22 -9.50 7.11 99.48 0.71 -8.79 16
21 H -0.23 -11.44 5.60 99.48 0.56 -10.88 16
22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
23 H 0.05 0.69 7.20 -2.39 -0.02 0.67 16
24 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16
25 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16
26 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16
27 H 0.05 0.96 7.56 -2.39 -0.02 0.95 16
28 H 0.17 2.68 7.21 -2.91 -0.02 2.66 16
29 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16
30 H 0.17 7.92 5.04 -2.91 -0.01 7.90 16
31 H 0.43 14.91 8.73 -96.75 -0.84 14.06 16
32 H 0.29 15.24 8.31 -92.71 -0.77 14.47 16
Total: -1.00 -70.78 283.14 -1.48 -72.26
By element:
Atomic # 1 Polarization: 25.12 SS G_CDS: 0.16 Total: 25.28 kcal
Atomic # 6 Polarization: -43.77 SS G_CDS: 5.99 Total: -37.77 kcal
Atomic # 7 Polarization: -121.36 SS G_CDS: -5.44 Total: -126.79 kcal
Atomic # 8 Polarization: -105.75 SS G_CDS: -3.79 Total: -109.53 kcal
Atomic # 14 Polarization: 40.79 SS G_CDS: 1.82 Total: 42.61 kcal
Atomic # 16 Polarization: 134.18 SS G_CDS: -0.23 Total: 133.95 kcal
Total: -70.78 -1.48 -72.26 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192935500.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.586 kcal
(2) G-P(sol) polarization free energy of solvation -70.782 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.195 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds