Wall clock time and date at job start Mon Mar 30 2020 00:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39503 * 110.99875 * 236.04574 * 2 1 3 5 5 C 1.39225 * 120.88126 * 60.00069 * 4 2 1 6 6 C 1.38051 * 119.14928 * 180.02562 * 5 4 2 7 7 N 1.31937 * 120.97173 * 0.02562 * 6 5 4 8 8 C 1.32021 * 121.94915 * 359.97438 * 7 6 5 9 9 C 1.38484 * 120.73486 * 359.72344 * 8 7 6 10 10 N 1.40069 * 120.52149 * 180.28810 * 9 8 7 11 11 S 1.65601 * 119.99882 * 35.26413 * 10 9 8 12 12 O 1.42094 * 106.40221 * 178.54335 * 11 10 9 13 13 O 1.42100 * 106.40215 * 311.46592 * 11 10 9 14 14 C 1.76199 * 107.21623 * 65.00295 * 11 10 9 15 15 H 1.08001 * 120.00251 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00026 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99981 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 119.99797 * 359.97438 * 16 14 11 19 19 H 1.48504 * 109.46503 * 90.00312 * 18 16 14 20 20 H 1.48497 * 109.47138 * 209.99951 * 18 16 14 21 21 H 1.48490 * 109.47266 * 330.00291 * 18 16 14 22 22 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 23 23 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 24 24 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 25 25 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 26 26 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 28 28 H 1.08002 * 120.42813 * 359.97438 * 5 4 2 29 29 H 1.07996 * 119.51787 * 179.97438 * 6 5 4 30 30 H 1.07996 * 119.63096 * 180.02562 * 8 7 6 31 31 H 0.96995 * 120.00152 * 215.27005 * 10 9 8 32 32 H 0.96992 * 119.99823 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9689 -0.7274 -1.0803 5 6 1.6672 -0.3613 -2.3892 6 6 2.1808 -1.1069 -3.4314 7 7 2.9483 -2.1554 -3.2025 8 6 3.2602 -2.5388 -1.9783 9 6 2.7914 -1.8419 -0.8773 10 7 3.1301 -2.2492 0.4194 11 16 4.6273 -2.8888 0.7219 12 8 4.6714 -3.1657 2.1149 13 8 4.8502 -3.8771 -0.2745 14 6 5.8078 -1.6135 0.4305 15 1 5.4784 -0.6346 0.1148 16 6 7.1520 -1.8650 0.6065 17 7 8.0330 -0.9130 0.3894 18 14 7.7215 -3.5575 1.1546 19 1 7.9730 -4.4054 -0.0384 20 1 8.9737 -3.4274 1.9422 21 1 6.6708 -4.1851 1.9954 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.4513 -0.9233 24 1 -0.3633 0.5740 0.8525 25 1 1.6461 1.8947 0.8901 26 1 3.0851 1.3422 0.0005 27 1 1.6460 1.8948 -0.8900 28 1 1.0389 0.4946 -2.5868 29 1 1.9502 -0.8284 -4.4491 30 1 3.8920 -3.4028 -1.8341 31 1 2.4876 -2.1567 1.1402 32 1 8.9786 -1.0900 0.5129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935500.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:49 Heat of formation + Delta-G solvation = -50.672592 kcal Electronic energy + Delta-G solvation = -19390.519348 eV Core-core repulsion = 16284.541722 eV Total energy + Delta-G solvation = -3105.977627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60410 -38.29945 -37.83729 -36.68303 -36.34900 -35.22052 -31.95578 -30.33299 -28.62821 -28.50336 -26.15199 -24.17947 -22.60282 -21.19920 -19.75657 -18.99124 -18.72072 -17.95572 -17.31907 -17.06607 -16.21970 -16.02334 -15.59759 -15.47940 -15.18524 -15.00612 -14.79993 -14.61058 -14.03459 -13.54988 -13.34099 -13.21436 -13.03062 -12.95244 -12.70109 -12.65481 -12.50847 -12.22798 -11.83490 -11.35762 -11.22611 -10.56934 -10.40535 -9.57524 -9.40158 -8.99166 -7.57527 -0.19254 0.10287 0.29761 1.04438 1.14730 1.20169 1.87383 2.26136 2.40364 2.71445 2.78844 3.13096 3.61121 3.83110 3.93173 3.96495 4.09855 4.34821 4.38850 4.48068 4.62552 4.68212 4.78916 4.94689 4.99045 5.00358 5.18687 5.34575 5.57601 5.88970 5.94912 6.04287 6.26306 6.48612 7.01495 8.18547 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.007492 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.447613 B = 3736.549144 C = 3928.084219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.524 5.524 3 C 0.029 3.971 4 C 0.101 3.899 5 C -0.171 4.171 6 C 0.079 3.921 7 N -0.483 5.483 8 C 0.037 3.963 9 C 0.124 3.876 10 N -1.029 6.029 11 S 2.693 3.307 12 O -1.014 7.014 13 O -1.011 7.011 14 C -1.030 5.030 15 H 0.100 0.900 16 C 0.110 3.890 17 N -0.850 5.850 18 Si 0.825 3.175 19 H -0.235 1.235 20 H -0.218 1.218 21 H -0.227 1.227 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.172 0.828 29 H 0.194 0.806 30 H 0.175 0.825 31 H 0.432 0.568 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.877 4.253 -3.321 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.246 5.246 3 C -0.117 4.117 4 C -0.005 4.005 5 C -0.193 4.193 6 C -0.080 4.080 7 N -0.192 5.192 8 C -0.123 4.123 9 C 0.023 3.977 10 N -0.778 5.778 11 S 2.795 3.205 12 O -1.004 7.004 13 O -1.001 7.001 14 C -1.163 5.163 15 H 0.118 0.882 16 C -0.107 4.107 17 N -0.479 5.479 18 Si 0.641 3.359 19 H -0.159 1.159 20 H -0.140 1.140 21 H -0.149 1.149 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.189 0.811 29 H 0.211 0.789 30 H 0.191 0.809 31 H 0.270 0.730 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.912 2.708 -3.324 14.557 hybrid contribution 0.131 1.109 0.472 1.212 sum -13.781 3.816 -2.852 14.581 Atomic orbital electron populations 1.22584 0.83458 1.03152 1.02767 1.59315 1.10341 1.15105 1.39857 1.22494 0.99910 0.86326 1.02983 1.19147 0.97731 0.92478 0.91152 1.22802 1.02224 1.02373 0.91868 1.23293 0.92863 0.90527 1.01340 1.67771 1.12805 1.16304 1.22340 1.23807 1.00498 1.00705 0.87246 1.18676 0.99462 0.94674 0.84866 1.52798 1.32598 1.78534 1.13858 1.00859 0.72594 0.74532 0.72525 1.93464 1.86454 1.86131 1.34375 1.93308 1.85008 1.61028 1.60725 1.30713 1.06638 1.16995 1.61945 0.88187 1.25159 0.95745 1.00115 0.89700 1.70002 1.03883 1.34261 1.39804 0.87487 0.84789 0.80896 0.82680 1.15852 1.14037 1.14944 0.91511 0.93123 0.88800 0.88598 0.93671 0.92796 0.81106 0.78932 0.80863 0.73034 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.35 127.69 1.19 1.65 16 2 N -0.52 -13.36 4.60 -743.82 -3.42 -16.78 16 3 C 0.03 0.66 9.34 127.69 1.19 1.85 16 4 C 0.10 3.06 4.76 38.58 0.18 3.25 16 5 C -0.17 -4.12 8.73 22.46 0.20 -3.92 16 6 C 0.08 2.10 11.17 84.63 0.95 3.05 16 7 N -0.48 -17.49 10.36 -195.60 -2.03 -19.52 16 8 C 0.04 1.52 10.41 84.72 0.88 2.40 16 9 C 0.12 4.74 6.39 38.31 0.24 4.99 16 10 N -1.03 -41.18 5.67 -50.71 -0.29 -41.47 16 11 S 2.69 134.18 4.09 -56.49 -0.23 133.95 16 12 O -1.01 -53.49 16.02 -128.00 -2.05 -55.54 16 13 O -1.01 -52.26 13.56 -128.00 -1.74 -53.99 16 14 C -1.03 -58.53 10.22 67.74 0.69 -57.84 16 15 H 0.10 5.94 8.06 -2.91 -0.02 5.92 16 16 C 0.11 6.34 5.47 84.66 0.46 6.81 16 17 N -0.85 -49.32 13.96 21.45 0.30 -49.02 16 18 Si 0.83 40.79 26.54 68.60 1.82 42.61 16 19 H -0.24 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.22 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.23 -11.44 5.60 99.48 0.56 -10.88 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 0.69 7.20 -2.39 -0.02 0.67 16 24 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 27 H 0.05 0.96 7.56 -2.39 -0.02 0.95 16 28 H 0.17 2.68 7.21 -2.91 -0.02 2.66 16 29 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.17 7.92 5.04 -2.91 -0.01 7.90 16 31 H 0.43 14.91 8.73 -96.75 -0.84 14.06 16 32 H 0.29 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -70.78 283.14 -1.48 -72.26 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.16 Total: 25.28 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 5.99 Total: -37.77 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -5.44 Total: -126.79 kcal Atomic # 8 Polarization: -105.75 SS G_CDS: -3.79 Total: -109.53 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.82 Total: 42.61 kcal Atomic # 16 Polarization: 134.18 SS G_CDS: -0.23 Total: 133.95 kcal Total: -70.78 -1.48 -72.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935500.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.586 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds