Wall clock time and date at job start Mon Mar 30 2020 00:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 119.99913 * 2 1 4 4 C 1.39028 * 120.00213 * 180.02562 * 2 1 3 5 5 C 1.38826 * 119.66514 * 4.99805 * 4 2 1 6 6 C 1.39126 * 119.00858 * 179.97438 * 5 4 2 7 7 N 1.39194 * 120.82597 * 180.02562 * 6 5 4 8 8 S 1.65606 * 119.99953 * 133.93851 * 7 6 5 9 9 O 1.42096 * 106.40230 * 184.78050 * 8 7 6 10 10 O 1.42097 * 106.39823 * 51.86288 * 8 7 6 11 11 C 1.76199 * 107.21885 * 298.32160 * 8 7 6 12 12 H 1.08002 * 119.99879 * 11.47237 * 11 8 7 13 13 C 1.37875 * 120.00065 * 191.19476 * 11 8 7 14 14 N 1.31510 * 120.00080 * 0.28242 * 13 11 8 15 15 Si 1.86798 * 120.00001 * 180.27268 * 13 11 8 16 16 H 1.48498 * 109.46913 * 90.00691 * 15 13 11 17 17 H 1.48501 * 109.47195 * 210.00273 * 15 13 11 18 18 H 1.48497 * 109.47359 * 330.00414 * 15 13 11 19 19 C 1.39693 * 118.34781 * 0.27484 * 6 5 4 20 20 C 1.37728 * 119.23801 * 359.47469 * 19 6 5 21 21 N 1.32089 * 120.92996 * 0.54224 * 20 19 6 22 22 H 1.09006 * 109.47064 * 269.99981 * 1 2 3 23 23 H 1.09004 * 109.47358 * 29.99366 * 1 2 3 24 24 H 1.08999 * 109.47325 * 150.00295 * 1 2 3 25 25 H 1.08997 * 109.47166 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47494 * 300.00347 * 3 2 1 27 27 H 1.09000 * 109.47031 * 60.00117 * 3 2 1 28 28 H 1.08001 * 120.49639 * 359.97438 * 5 4 2 29 29 H 0.96999 * 120.00314 * 313.94454 * 7 6 5 30 30 H 0.97000 * 120.00649 * 179.97438 * 14 13 11 31 31 H 1.08008 * 120.38284 * 179.70757 * 19 6 5 32 32 H 1.07996 * 119.53782 * 180.25110 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1601 -1.2040 -0.0005 5 6 1.4630 -2.3999 -0.1062 6 6 2.1724 -3.5967 -0.1059 7 7 1.5119 -4.8174 -0.2104 8 16 2.0696 -5.9738 -1.2565 9 8 1.1305 -7.0393 -1.2145 10 8 3.4506 -6.1432 -0.9680 11 6 1.9800 -5.2952 -2.8801 12 1 1.7876 -4.2410 -3.0149 13 6 2.1612 -6.1088 -3.9783 14 7 2.3954 -7.3925 -3.8142 15 14 2.0737 -5.3880 -5.6994 16 1 3.4266 -4.9411 -6.1181 17 1 1.5793 -6.4213 -6.6443 18 1 1.1459 -4.2286 -5.7039 19 6 3.5637 -3.5430 0.0073 20 6 4.1841 -2.3171 0.1030 21 7 3.4815 -1.1985 0.0998 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8901 -0.5137 24 1 -0.3634 -0.8900 -0.5138 25 1 3.2691 1.0696 0.0005 26 1 1.9341 1.8404 -0.8900 27 1 1.9341 1.8403 0.8900 28 1 0.3861 -2.4012 -0.1874 29 1 0.7248 -4.9908 0.3294 30 1 2.5225 -7.9650 -4.5868 31 1 4.1466 -4.4522 0.0158 32 1 5.2598 -2.2698 0.1866 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:38 Heat of formation + Delta-G solvation = -37.438139 kcal Electronic energy + Delta-G solvation = -18874.577234 eV Core-core repulsion = 15769.173496 eV Total energy + Delta-G solvation = -3105.403738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.96586 -36.66579 -35.38275 -34.80076 -34.13455 -33.15473 -30.23244 -29.74805 -27.91227 -26.20866 -24.99835 -22.64057 -21.19364 -19.18337 -17.94189 -17.48558 -16.48084 -15.97802 -15.43344 -15.27161 -15.13665 -14.89621 -14.18850 -13.88793 -13.77814 -13.44504 -13.10492 -12.55283 -12.17398 -12.06291 -11.98979 -11.59586 -11.35747 -11.25252 -11.08911 -10.64657 -10.45523 -10.34655 -10.14285 -9.62128 -9.30743 -9.08327 -9.00180 -8.32684 -7.32758 -6.76622 -5.39994 1.62544 1.81351 2.19194 3.04287 3.08094 3.11406 3.17777 4.00106 4.27950 4.44919 4.61484 4.80288 5.14316 5.25950 5.32105 5.45713 5.53751 5.56102 5.62545 5.65587 5.82290 5.86236 6.00877 6.25126 6.36315 6.46777 6.90488 7.02051 7.11411 7.25820 7.55069 7.71624 7.90921 8.49659 8.81802 10.17006 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.006499 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.779120 B = 4307.638595 C = 4817.795900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.623 5.623 3 C 0.098 3.902 4 C 0.408 3.592 5 C -0.266 4.266 6 C 0.260 3.740 7 N -1.071 6.071 8 S 2.703 3.297 9 O -0.988 6.988 10 O -0.998 6.998 11 C -1.012 5.012 12 H 0.103 0.897 13 C 0.134 3.866 14 N -0.841 5.841 15 Si 0.922 3.078 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.262 1.262 19 C -0.253 4.253 20 C 0.160 3.840 21 N -0.561 5.561 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.133 0.867 29 H 0.414 0.586 30 H 0.292 0.708 31 H 0.164 0.836 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 13.119 5.911 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.339 5.339 3 C -0.045 4.045 4 C 0.175 3.825 5 C -0.295 4.295 6 C 0.153 3.847 7 N -0.814 5.814 8 S 2.804 3.196 9 O -0.978 6.978 10 O -0.988 6.988 11 C -1.146 5.146 12 H 0.121 0.879 13 C -0.085 4.085 14 N -0.470 5.470 15 Si 0.745 3.255 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.186 1.186 19 C -0.279 4.279 20 C 0.004 3.996 21 N -0.280 5.280 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.151 0.849 29 H 0.248 0.752 30 H 0.102 0.898 31 H 0.182 0.818 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.689 12.954 6.096 14.416 hybrid contribution -1.148 -0.057 -1.218 1.675 sum -2.837 12.897 4.878 14.077 Atomic orbital electron populations 1.21641 0.78958 1.02926 1.01171 1.46031 1.04783 1.02954 1.80139 1.21541 0.99083 0.84198 0.99702 1.17991 0.88380 0.85221 0.90922 1.21330 1.01076 0.90913 1.16154 1.17359 0.91142 0.85213 0.90952 1.54079 1.41638 1.27838 1.57866 1.01006 0.73086 0.71095 0.74413 1.93398 1.64066 1.52456 1.87902 1.93338 1.34656 1.84646 1.86119 1.30379 1.65021 1.06073 1.13138 0.87884 1.24736 0.88670 0.93642 1.01448 1.69909 1.38231 1.04408 1.34456 0.86138 0.79575 0.79559 0.80206 1.19029 1.19861 1.18649 1.22624 0.94170 1.01818 1.09244 1.22178 0.99269 0.86217 0.91963 1.67075 1.05854 1.32110 1.22945 0.93369 0.91434 0.90915 0.89063 0.93515 0.93594 0.84949 0.75178 0.89768 0.81850 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 10.32 59.84 0.62 1.59 16 2 N -0.62 -8.30 3.39 -189.72 -0.64 -8.94 16 3 C 0.10 1.08 10.71 59.85 0.64 1.72 16 4 C 0.41 6.72 7.37 -155.01 -1.14 5.58 16 5 C -0.27 -4.52 9.22 -39.03 -0.36 -4.88 16 6 C 0.26 5.02 6.16 -83.64 -0.52 4.51 16 7 N -1.07 -21.50 5.78 32.51 0.19 -21.31 16 8 S 2.70 70.04 5.06 -107.50 -0.54 69.49 16 9 O -0.99 -28.23 17.58 -57.17 -1.01 -29.24 16 10 O -1.00 -27.57 15.23 -57.17 -0.87 -28.44 16 11 C -1.01 -27.68 9.61 30.60 0.29 -27.38 16 12 H 0.10 2.67 7.81 -52.49 -0.41 2.26 16 13 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 14 N -0.84 -24.27 12.84 55.43 0.71 -23.56 16 15 Si 0.92 20.57 29.54 -169.99 -5.02 15.55 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 19 C -0.25 -4.87 9.29 -39.22 -0.36 -5.23 16 20 C 0.16 2.67 11.16 -17.63 -0.20 2.48 16 21 N -0.56 -9.47 8.85 -12.53 -0.11 -9.59 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 24 H 0.07 0.75 5.97 -51.93 -0.31 0.44 16 25 H 0.09 1.12 6.82 -51.93 -0.35 0.76 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.13 1.94 6.02 -52.49 -0.32 1.63 16 29 H 0.41 6.91 8.95 -34.47 -0.31 6.60 16 30 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.16 3.38 5.84 -52.48 -0.31 3.07 16 32 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 289.16 15.07 4.36 4.36 Total: -1.00 -34.66 289.16 -7.31 -41.97 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.25 Total: 7.74 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.12 Total: -18.03 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.15 Total: -63.40 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -1.88 Total: -57.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 70.04 SS G_CDS: -0.54 Total: 69.49 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.66 -7.31 -41.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.530 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds