Wall clock time and date at job start Mon Mar 30 2020 00:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 119.99913 * 2 1 4 4 C 1.39028 * 120.00213 * 180.02562 * 2 1 3 5 5 C 1.38826 * 119.66514 * 4.99805 * 4 2 1 6 6 C 1.39126 * 119.00858 * 179.97438 * 5 4 2 7 7 N 1.39194 * 120.82597 * 180.02562 * 6 5 4 8 8 S 1.65606 * 119.99953 * 133.93851 * 7 6 5 9 9 O 1.42096 * 106.40230 * 184.78050 * 8 7 6 10 10 O 1.42097 * 106.39823 * 51.86288 * 8 7 6 11 11 C 1.76199 * 107.21885 * 298.32160 * 8 7 6 12 12 H 1.08002 * 119.99879 * 11.47237 * 11 8 7 13 13 C 1.37875 * 120.00065 * 191.19476 * 11 8 7 14 14 N 1.31510 * 120.00080 * 0.28242 * 13 11 8 15 15 Si 1.86798 * 120.00001 * 180.27268 * 13 11 8 16 16 H 1.48498 * 109.46913 * 90.00691 * 15 13 11 17 17 H 1.48501 * 109.47195 * 210.00273 * 15 13 11 18 18 H 1.48497 * 109.47359 * 330.00414 * 15 13 11 19 19 C 1.39693 * 118.34781 * 0.27484 * 6 5 4 20 20 C 1.37728 * 119.23801 * 359.47469 * 19 6 5 21 21 N 1.32089 * 120.92996 * 0.54224 * 20 19 6 22 22 H 1.09006 * 109.47064 * 269.99981 * 1 2 3 23 23 H 1.09004 * 109.47358 * 29.99366 * 1 2 3 24 24 H 1.08999 * 109.47325 * 150.00295 * 1 2 3 25 25 H 1.08997 * 109.47166 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47494 * 300.00347 * 3 2 1 27 27 H 1.09000 * 109.47031 * 60.00117 * 3 2 1 28 28 H 1.08001 * 120.49639 * 359.97438 * 5 4 2 29 29 H 0.96999 * 120.00314 * 313.94454 * 7 6 5 30 30 H 0.97000 * 120.00649 * 179.97438 * 14 13 11 31 31 H 1.08008 * 120.38284 * 179.70757 * 19 6 5 32 32 H 1.07996 * 119.53782 * 180.25110 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1601 -1.2040 -0.0005 5 6 1.4630 -2.3999 -0.1062 6 6 2.1724 -3.5967 -0.1059 7 7 1.5119 -4.8174 -0.2104 8 16 2.0696 -5.9738 -1.2565 9 8 1.1305 -7.0393 -1.2145 10 8 3.4506 -6.1432 -0.9680 11 6 1.9800 -5.2952 -2.8801 12 1 1.7876 -4.2410 -3.0149 13 6 2.1612 -6.1088 -3.9783 14 7 2.3954 -7.3925 -3.8142 15 14 2.0737 -5.3880 -5.6994 16 1 3.4266 -4.9411 -6.1181 17 1 1.5793 -6.4213 -6.6443 18 1 1.1459 -4.2286 -5.7039 19 6 3.5637 -3.5430 0.0073 20 6 4.1841 -2.3171 0.1030 21 7 3.4815 -1.1985 0.0998 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8901 -0.5137 24 1 -0.3634 -0.8900 -0.5138 25 1 3.2691 1.0696 0.0005 26 1 1.9341 1.8404 -0.8900 27 1 1.9341 1.8403 0.8900 28 1 0.3861 -2.4012 -0.1874 29 1 0.7248 -4.9908 0.3294 30 1 2.5225 -7.9650 -4.5868 31 1 4.1466 -4.4522 0.0158 32 1 5.2598 -2.2698 0.1866 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192943610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:38 Heat of formation + Delta-G solvation = -63.946071 kcal Electronic energy + Delta-G solvation = -18875.726704 eV Core-core repulsion = 15769.173496 eV Total energy + Delta-G solvation = -3106.553208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.26950 -37.94749 -37.39678 -36.28732 -36.22211 -35.22169 -31.50378 -31.10411 -28.84693 -28.31879 -26.09804 -23.97108 -22.50000 -21.14544 -19.60296 -19.01704 -18.40145 -17.35975 -17.11304 -16.72317 -16.47148 -16.13646 -15.95218 -15.64567 -15.05415 -14.87984 -14.34058 -14.04010 -13.45422 -13.34810 -13.20617 -13.05817 -12.98798 -12.91602 -12.72281 -12.60690 -12.37551 -12.33860 -11.76566 -11.29163 -11.05106 -10.80371 -10.42220 -9.86772 -8.79902 -8.46860 -7.54126 -0.01328 0.39723 0.55833 1.30724 1.32579 1.47788 2.05325 2.17167 2.51421 2.73021 2.96608 3.52589 3.69463 3.99135 4.13656 4.26894 4.33258 4.45742 4.55040 4.59648 4.69170 4.81524 4.86115 4.95910 5.04611 5.10728 5.22666 5.42793 5.66195 5.82932 6.07041 6.20208 6.42296 6.72771 7.20963 8.16207 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.006499 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.779120 B = 4307.638595 C = 4817.795900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.622 5.622 3 C 0.094 3.906 4 C 0.404 3.596 5 C -0.266 4.266 6 C 0.236 3.764 7 N -1.058 6.058 8 S 2.715 3.285 9 O -1.023 7.023 10 O -1.025 7.025 11 C -1.032 5.032 12 H 0.112 0.888 13 C 0.075 3.925 14 N -0.885 5.885 15 Si 0.987 3.013 16 H -0.256 1.256 17 H -0.257 1.257 18 H -0.251 1.251 19 C -0.283 4.283 20 C 0.169 3.831 21 N -0.564 5.564 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.154 0.846 29 H 0.428 0.572 30 H 0.301 0.699 31 H 0.142 0.858 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 15.915 5.215 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.336 5.336 3 C -0.049 4.049 4 C 0.168 3.832 5 C -0.295 4.295 6 C 0.131 3.869 7 N -0.806 5.806 8 S 2.817 3.183 9 O -1.013 7.013 10 O -1.015 7.015 11 C -1.166 5.166 12 H 0.130 0.870 13 C -0.139 4.139 14 N -0.516 5.516 15 Si 0.805 3.195 16 H -0.180 1.180 17 H -0.181 1.181 18 H -0.174 1.174 19 C -0.309 4.309 20 C 0.012 3.988 21 N -0.284 5.284 22 H 0.081 0.919 23 H 0.112 0.888 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.172 0.828 29 H 0.265 0.735 30 H 0.111 0.889 31 H 0.159 0.841 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.540 15.780 5.426 16.879 hybrid contribution -0.914 -0.765 -0.886 1.485 sum -3.454 15.015 4.540 16.062 Atomic orbital electron populations 1.21901 0.76986 1.04049 1.02491 1.46413 1.06157 1.02514 1.78549 1.21700 0.98113 0.83431 1.01635 1.18314 0.88465 0.86376 0.89998 1.21482 1.02148 0.90169 1.15706 1.17581 0.91454 0.85267 0.92625 1.53342 1.42252 1.27657 1.57358 1.00325 0.72236 0.71181 0.74586 1.93341 1.64770 1.54684 1.88524 1.93304 1.36177 1.85493 1.86514 1.30688 1.65112 1.06688 1.14132 0.87003 1.25926 0.87799 0.93913 1.06268 1.69984 1.39344 1.05977 1.36282 0.85179 0.80293 0.79415 0.74655 1.17975 1.18134 1.17417 1.22583 0.94377 1.02088 1.11863 1.22596 1.00677 0.85264 0.90247 1.67224 1.06238 1.31725 1.23201 0.91893 0.88840 0.91302 0.90528 0.91706 0.91435 0.82826 0.73453 0.88884 0.84055 0.79546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.32 127.77 1.32 2.77 16 2 N -0.62 -14.63 3.39 -754.16 -2.56 -17.19 16 3 C 0.09 1.75 10.71 127.77 1.37 3.12 16 4 C 0.40 12.47 7.37 132.94 0.98 13.45 16 5 C -0.27 -8.68 9.22 22.62 0.21 -8.47 16 6 C 0.24 9.11 6.16 38.54 0.24 9.35 16 7 N -1.06 -43.05 5.78 -51.05 -0.29 -43.35 16 8 S 2.71 144.48 5.06 -56.49 -0.29 144.20 16 9 O -1.02 -60.22 17.58 -128.00 -2.25 -62.47 16 10 O -1.03 -58.83 15.23 -128.00 -1.95 -60.78 16 11 C -1.03 -56.90 9.61 67.73 0.65 -56.25 16 12 H 0.11 5.77 7.81 -2.91 -0.02 5.74 16 13 C 0.08 4.14 5.46 84.65 0.46 4.60 16 14 N -0.89 -51.90 12.84 21.45 0.28 -51.62 16 15 Si 0.99 41.22 29.54 68.60 2.03 43.25 16 16 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 18 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 19 C -0.28 -11.04 9.29 22.50 0.21 -10.83 16 20 C 0.17 5.51 11.16 84.53 0.94 6.45 16 21 N -0.56 -18.13 8.85 -193.56 -1.71 -19.85 16 22 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 23 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 24 H 0.07 1.21 5.97 -2.39 -0.01 1.19 16 25 H 0.08 1.68 6.82 -2.39 -0.02 1.67 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.15 4.19 6.02 -2.91 -0.02 4.17 16 29 H 0.43 14.42 8.95 -96.74 -0.87 13.55 16 30 H 0.30 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.14 6.12 5.84 -2.91 -0.02 6.10 16 32 H 0.19 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -75.46 289.16 -0.07 -75.54 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.30 Total: 28.07 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 6.38 Total: -35.80 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -4.29 Total: -132.00 kcal Atomic # 8 Polarization: -119.05 SS G_CDS: -4.20 Total: -123.25 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 144.48 SS G_CDS: -0.29 Total: 144.20 kcal Total: -75.46 -0.07 -75.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.590 kcal (2) G-P(sol) polarization free energy of solvation -75.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds