Wall clock time and date at job start Mon Mar 30 2020 00:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 120.00091 * 2 1 4 4 C 1.39700 * 119.99916 * 180.02562 * 2 1 3 5 5 C 1.38991 * 120.45306 * 179.97438 * 4 2 1 6 6 N 1.31788 * 120.81843 * 180.02562 * 5 4 2 7 7 C 1.31819 * 121.87089 * 359.72277 * 6 5 4 8 8 C 1.38940 * 120.82118 * 0.54463 * 7 6 5 9 9 N 1.39698 * 120.45160 * 179.74892 * 8 7 6 10 10 S 1.65597 * 120.00361 * 313.59343 * 9 8 7 11 11 O 1.42101 * 106.40343 * 184.87325 * 10 9 8 12 12 O 1.42103 * 106.40210 * 51.94798 * 10 9 8 13 13 C 1.76207 * 107.21694 * 298.41070 * 10 9 8 14 14 H 1.08004 * 119.99448 * 11.19923 * 13 10 9 15 15 C 1.37873 * 120.00069 * 191.47278 * 13 10 9 16 16 N 1.31516 * 120.00088 * 359.72951 * 15 13 10 17 17 Si 1.86795 * 120.00068 * 179.72358 * 15 13 10 18 18 H 1.48503 * 109.47183 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47291 * 120.00053 * 17 15 13 20 20 H 1.48501 * 109.47678 * 240.00229 * 17 15 13 21 21 C 1.39133 * 120.45672 * 0.02562 * 4 2 1 22 22 H 1.09007 * 109.46689 * 239.99834 * 1 2 3 23 23 H 1.08998 * 109.47243 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47347 * 120.00440 * 1 2 3 25 25 H 1.09005 * 109.47213 * 270.00515 * 3 2 1 26 26 H 1.09005 * 109.47019 * 30.00018 * 3 2 1 27 27 H 1.08999 * 109.47388 * 150.00350 * 3 2 1 28 28 H 1.07996 * 119.59192 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.58781 * 180.28991 * 7 6 5 30 30 H 0.97005 * 119.99921 * 133.59196 * 9 8 7 31 31 H 0.96994 * 119.99955 * 179.97438 * 16 15 13 32 32 H 1.08007 * 120.84706 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2098 -0.0005 5 6 3.5534 -1.2209 -0.0011 6 7 4.2196 -2.3580 -0.0021 7 6 3.6055 -3.5244 0.0028 8 6 2.2181 -3.5985 -0.0021 9 7 1.5754 -4.8388 -0.0022 10 16 2.0761 -6.0309 -1.0368 11 8 1.1645 -7.1093 -0.8778 12 8 3.4781 -6.1639 -0.8473 13 6 1.8508 -5.4268 -2.6767 14 1 1.6231 -4.3839 -2.8414 15 6 1.9596 -6.2864 -3.7491 16 7 2.2368 -7.5563 -3.5485 17 14 1.7132 -5.6476 -5.4870 18 1 1.4143 -4.1936 -5.4422 19 1 2.9496 -5.8740 -6.2776 20 1 0.5803 -6.3669 -6.1230 21 6 1.4775 -2.4203 -0.0016 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3633 1.0276 0.0005 24 1 -0.3634 -0.5139 -0.8899 25 1 2.3791 1.5834 -1.0277 26 1 1.6084 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 4.0941 -0.2860 -0.0015 29 1 4.1882 -4.4337 0.0065 30 1 0.8357 -5.0019 0.6039 31 1 2.3130 -8.1611 -4.3029 32 1 0.3977 -2.4448 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192944013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:44 Heat of formation + Delta-G solvation = -41.318262 kcal Electronic energy + Delta-G solvation = -18869.703500 eV Core-core repulsion = 15764.131507 eV Total energy + Delta-G solvation = -3105.571992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.01579 -36.87183 -35.37068 -34.74734 -34.10957 -33.12950 -30.82076 -29.29778 -27.87499 -26.18522 -25.02468 -22.66843 -21.26979 -19.16138 -17.86447 -17.40841 -16.50262 -16.32852 -15.89327 -15.34068 -15.16566 -14.85903 -14.28093 -13.95248 -13.58115 -13.15340 -12.99014 -12.75788 -12.49392 -12.22868 -12.07682 -11.73290 -11.31026 -11.25686 -10.97825 -10.61315 -10.42906 -10.32430 -10.17905 -10.11368 -9.29611 -9.14633 -8.94477 -8.21488 -7.23306 -6.74326 -5.37349 1.54991 1.78780 2.18227 3.04005 3.06985 3.12691 3.20422 4.01809 4.25236 4.47579 4.62779 4.84518 4.99453 5.01530 5.20890 5.23954 5.41094 5.46512 5.47843 5.56371 5.58949 5.65756 5.90766 6.13741 6.24737 6.43374 6.87872 6.98988 7.15072 7.27740 7.39690 7.71998 7.93528 8.51105 8.84232 10.19232 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.006498 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.043695 B = 4308.001815 C = 4825.288479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.636 5.636 3 C 0.095 3.905 4 C 0.174 3.826 5 C 0.000 4.000 6 N -0.426 5.426 7 C 0.020 3.980 8 C 0.176 3.824 9 N -1.070 6.070 10 S 2.702 3.298 11 O -0.988 6.988 12 O -0.998 6.998 13 C -1.011 5.011 14 H 0.103 0.897 15 C 0.133 3.867 16 N -0.840 5.840 17 Si 0.921 3.079 18 H -0.262 1.262 19 H -0.269 1.269 20 H -0.270 1.270 21 C -0.181 4.181 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.185 0.815 30 H 0.413 0.587 31 H 0.291 0.709 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 15.172 5.742 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.350 5.350 3 C -0.048 4.048 4 C 0.070 3.930 5 C -0.163 4.163 6 N -0.133 5.133 7 C -0.142 4.142 8 C 0.075 3.925 9 N -0.814 5.814 10 S 2.803 3.197 11 O -0.978 6.978 12 O -0.988 6.988 13 C -1.146 5.146 14 H 0.121 0.879 15 C -0.085 4.085 16 N -0.470 5.470 17 Si 0.745 3.255 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.215 4.215 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.166 0.834 29 H 0.201 0.799 30 H 0.247 0.753 31 H 0.102 0.898 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.367 14.266 5.868 15.606 hybrid contribution -1.816 0.717 -1.161 2.271 sum -4.183 14.983 4.707 16.252 Atomic orbital electron populations 1.21601 0.79579 1.02163 1.01421 1.46186 1.04850 1.02833 1.81091 1.21649 0.97261 0.84700 1.01197 1.18683 0.92449 0.85848 0.95993 1.22275 0.89064 0.97059 1.07872 1.67560 1.39605 0.97714 1.08453 1.23534 0.90938 0.97226 1.02506 1.18271 0.92278 0.85509 0.96418 1.54114 1.46934 1.25590 1.54737 1.01021 0.73267 0.70812 0.74590 1.93397 1.65448 1.51466 1.87515 1.93339 1.33233 1.84830 1.87351 1.30408 1.64662 1.05878 1.13609 0.87882 1.24737 0.88831 0.93431 1.01520 1.69919 1.38417 1.03648 1.34982 0.86109 0.78762 0.79986 0.80628 1.18628 1.19431 1.19545 1.21037 1.00223 0.90132 1.10085 0.92882 0.91019 0.92622 0.93391 0.91680 0.91199 0.83394 0.79863 0.75349 0.89835 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 9.43 59.85 0.56 1.45 16 2 N -0.64 -7.37 3.41 -187.44 -0.64 -8.01 16 3 C 0.10 0.79 10.17 59.84 0.61 1.40 16 4 C 0.17 2.63 6.56 -83.66 -0.55 2.08 16 5 C 0.00 0.01 10.38 -17.29 -0.18 -0.17 16 6 N -0.43 -8.17 10.35 -12.90 -0.13 -8.31 16 7 C 0.02 0.42 10.40 -17.30 -0.18 0.24 16 8 C 0.18 3.43 6.15 -83.67 -0.51 2.92 16 9 N -1.07 -21.53 5.78 32.47 0.19 -21.34 16 10 S 2.70 70.54 5.06 -107.50 -0.54 69.99 16 11 O -0.99 -28.31 17.58 -57.17 -1.01 -29.32 16 12 O -1.00 -28.00 15.19 -57.17 -0.87 -28.87 16 13 C -1.01 -27.86 9.61 30.60 0.29 -27.57 16 14 H 0.10 2.69 7.81 -52.48 -0.41 2.28 16 15 C 0.13 3.71 5.45 -17.82 -0.10 3.61 16 16 N -0.84 -24.43 12.84 55.43 0.71 -23.72 16 17 Si 0.92 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 C -0.18 -2.98 9.35 -38.90 -0.36 -3.35 16 22 H 0.05 0.47 7.99 -51.93 -0.41 0.05 16 23 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 24 H 0.06 0.55 7.98 -51.93 -0.41 0.13 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 27 H 0.07 0.55 6.22 -51.93 -0.32 0.23 16 28 H 0.15 1.88 6.15 -52.49 -0.32 1.55 16 29 H 0.18 4.14 5.73 -52.49 -0.30 3.84 16 30 H 0.41 6.86 8.96 -34.47 -0.31 6.55 16 31 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.13 1.90 6.88 -52.48 -0.36 1.54 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -35.07 288.46 -6.61 -41.68 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.23 Total: 7.23 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -0.42 Total: -19.39 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.13 Total: -61.37 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -1.87 Total: -58.18 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 70.54 SS G_CDS: -0.54 Total: 69.99 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.07 -6.61 -41.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192944013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.359 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds