Wall clock time and date at job start Mon Mar 30 2020 00:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 120.00091 * 2 1 4 4 C 1.39700 * 119.99916 * 180.02562 * 2 1 3 5 5 C 1.38991 * 120.45306 * 179.97438 * 4 2 1 6 6 N 1.31788 * 120.81843 * 180.02562 * 5 4 2 7 7 C 1.31819 * 121.87089 * 359.72277 * 6 5 4 8 8 C 1.38940 * 120.82118 * 0.54463 * 7 6 5 9 9 N 1.39698 * 120.45160 * 179.74892 * 8 7 6 10 10 S 1.65597 * 120.00361 * 313.59343 * 9 8 7 11 11 O 1.42101 * 106.40343 * 184.87325 * 10 9 8 12 12 O 1.42103 * 106.40210 * 51.94798 * 10 9 8 13 13 C 1.76207 * 107.21694 * 298.41070 * 10 9 8 14 14 H 1.08004 * 119.99448 * 11.19923 * 13 10 9 15 15 C 1.37873 * 120.00069 * 191.47278 * 13 10 9 16 16 N 1.31516 * 120.00088 * 359.72951 * 15 13 10 17 17 Si 1.86795 * 120.00068 * 179.72358 * 15 13 10 18 18 H 1.48503 * 109.47183 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47291 * 120.00053 * 17 15 13 20 20 H 1.48501 * 109.47678 * 240.00229 * 17 15 13 21 21 C 1.39133 * 120.45672 * 0.02562 * 4 2 1 22 22 H 1.09007 * 109.46689 * 239.99834 * 1 2 3 23 23 H 1.08998 * 109.47243 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47347 * 120.00440 * 1 2 3 25 25 H 1.09005 * 109.47213 * 270.00515 * 3 2 1 26 26 H 1.09005 * 109.47019 * 30.00018 * 3 2 1 27 27 H 1.08999 * 109.47388 * 150.00350 * 3 2 1 28 28 H 1.07996 * 119.59192 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.58781 * 180.28991 * 7 6 5 30 30 H 0.97005 * 119.99921 * 133.59196 * 9 8 7 31 31 H 0.96994 * 119.99955 * 179.97438 * 16 15 13 32 32 H 1.08007 * 120.84706 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2098 -0.0005 5 6 3.5534 -1.2209 -0.0011 6 7 4.2196 -2.3580 -0.0021 7 6 3.6055 -3.5244 0.0028 8 6 2.2181 -3.5985 -0.0021 9 7 1.5754 -4.8388 -0.0022 10 16 2.0761 -6.0309 -1.0368 11 8 1.1645 -7.1093 -0.8778 12 8 3.4781 -6.1639 -0.8473 13 6 1.8508 -5.4268 -2.6767 14 1 1.6231 -4.3839 -2.8414 15 6 1.9596 -6.2864 -3.7491 16 7 2.2368 -7.5563 -3.5485 17 14 1.7132 -5.6476 -5.4870 18 1 1.4143 -4.1936 -5.4422 19 1 2.9496 -5.8740 -6.2776 20 1 0.5803 -6.3669 -6.1230 21 6 1.4775 -2.4203 -0.0016 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3633 1.0276 0.0005 24 1 -0.3634 -0.5139 -0.8899 25 1 2.3791 1.5834 -1.0277 26 1 1.6084 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 4.0941 -0.2860 -0.0015 29 1 4.1882 -4.4337 0.0065 30 1 0.8357 -5.0019 0.6039 31 1 2.3130 -8.1611 -4.3029 32 1 0.3977 -2.4448 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192944013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:43 Heat of formation + Delta-G solvation = -69.957402 kcal Electronic energy + Delta-G solvation = -18870.945386 eV Core-core repulsion = 15764.131507 eV Total energy + Delta-G solvation = -3106.813879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32901 -38.01435 -37.43518 -36.30043 -36.24422 -35.21313 -32.04225 -30.48529 -28.85107 -28.31340 -26.07194 -23.98857 -22.52409 -21.14011 -19.59265 -18.85747 -18.37004 -17.71313 -17.29324 -17.09602 -16.45888 -16.02136 -15.93447 -15.60277 -15.18731 -14.47286 -14.14984 -14.04752 -13.80736 -13.40482 -13.36189 -13.12137 -13.05769 -12.81585 -12.60279 -12.55304 -12.35815 -12.33222 -11.85337 -11.30257 -11.29341 -11.00758 -10.52423 -9.69813 -8.79295 -8.32486 -7.53181 -0.02905 0.42489 0.44287 1.29774 1.31926 1.48895 2.12856 2.19242 2.52244 2.74182 2.90621 3.53136 3.75035 3.90766 3.98393 4.08592 4.22677 4.32076 4.53454 4.57070 4.61186 4.81096 4.83268 4.93445 4.95219 5.04914 5.21709 5.36249 5.58595 5.83451 6.11943 6.28359 6.36471 6.73339 7.13127 8.17110 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.006498 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.043695 B = 4308.001815 C = 4825.288479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.630 5.630 3 C 0.084 3.916 4 C 0.186 3.814 5 C 0.003 3.997 6 N -0.444 5.444 7 C -0.018 4.018 8 C 0.157 3.843 9 N -1.055 6.055 10 S 2.713 3.287 11 O -1.022 7.022 12 O -1.029 7.029 13 C -1.032 5.032 14 H 0.112 0.888 15 C 0.073 3.927 16 N -0.886 5.886 17 Si 0.988 3.012 18 H -0.253 1.253 19 H -0.259 1.259 20 H -0.253 1.253 21 C -0.182 4.182 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.184 0.816 29 H 0.153 0.847 30 H 0.428 0.572 31 H 0.301 0.699 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 18.743 5.028 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.340 5.340 3 C -0.058 4.058 4 C 0.079 3.921 5 C -0.161 4.161 6 N -0.151 5.151 7 C -0.179 4.179 8 C 0.057 3.943 9 N -0.804 5.804 10 S 2.815 3.185 11 O -1.012 7.012 12 O -1.018 7.018 13 C -1.166 5.166 14 H 0.130 0.870 15 C -0.141 4.141 16 N -0.517 5.517 17 Si 0.806 3.194 18 H -0.176 1.176 19 H -0.183 1.183 20 H -0.177 1.177 21 C -0.217 4.217 22 H 0.077 0.923 23 H 0.122 0.878 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.201 0.799 29 H 0.170 0.830 30 H 0.265 0.735 31 H 0.111 0.889 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.753 17.851 5.182 18.963 hybrid contribution -1.412 -0.130 -0.829 1.643 sum -5.165 17.721 4.353 18.965 Atomic orbital electron populations 1.21853 0.77965 1.04413 1.01443 1.46563 1.06087 1.02498 1.78886 1.21955 0.97879 0.83659 1.02261 1.18759 0.92409 0.86974 0.93957 1.22867 0.89949 0.97127 1.06206 1.67487 1.40457 0.98112 1.09075 1.23117 0.91545 0.97098 1.06152 1.18313 0.92003 0.85747 0.98229 1.53326 1.47479 1.25360 1.54260 1.00348 0.72343 0.70996 0.74808 1.93340 1.66048 1.53736 1.88104 1.93306 1.35013 1.85736 1.87793 1.30714 1.64707 1.06510 1.14626 0.86965 1.25955 0.88059 0.93515 1.06532 1.69995 1.39583 1.05173 1.36903 0.85127 0.79642 0.79883 0.74709 1.17575 1.18277 1.17691 1.21197 1.01252 0.89472 1.09744 0.92268 0.87788 0.93173 0.92596 0.88734 0.90652 0.79944 0.83011 0.73502 0.88911 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 9.43 127.77 1.20 2.42 16 2 N -0.63 -11.94 3.41 -746.94 -2.55 -14.49 16 3 C 0.08 1.00 10.17 127.77 1.30 2.30 16 4 C 0.19 5.12 6.56 38.28 0.25 5.37 16 5 C 0.00 0.10 10.38 84.88 0.88 0.98 16 6 N -0.44 -17.07 10.35 -194.73 -2.01 -19.08 16 7 C -0.02 -0.79 10.40 84.86 0.88 0.09 16 8 C 0.16 6.19 6.15 38.28 0.24 6.42 16 9 N -1.05 -43.53 5.78 -51.18 -0.30 -43.83 16 10 S 2.71 147.09 5.06 -56.49 -0.29 146.80 16 11 O -1.02 -60.75 17.58 -128.00 -2.25 -63.00 16 12 O -1.03 -60.98 15.19 -128.00 -1.94 -62.93 16 13 C -1.03 -57.72 9.61 67.73 0.65 -57.07 16 14 H 0.11 5.86 7.81 -2.91 -0.02 5.84 16 15 C 0.07 4.09 5.45 84.65 0.46 4.56 16 16 N -0.89 -52.63 12.84 21.45 0.28 -52.36 16 17 Si 0.99 41.76 29.54 68.60 2.03 43.79 16 18 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 21 C -0.18 -5.73 9.35 22.71 0.21 -5.51 16 22 H 0.06 0.80 7.99 -2.38 -0.02 0.79 16 23 H 0.10 0.83 7.79 -2.39 -0.02 0.82 16 24 H 0.05 0.80 7.98 -2.39 -0.02 0.78 16 25 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.09 0.64 7.92 -2.38 -0.02 0.62 16 27 H 0.07 0.84 6.22 -2.39 -0.01 0.83 16 28 H 0.18 3.99 6.15 -2.91 -0.02 3.97 16 29 H 0.15 7.42 5.73 -2.91 -0.02 7.41 16 30 H 0.43 14.46 8.96 -96.74 -0.87 13.59 16 31 H 0.30 15.94 8.31 -92.71 -0.77 15.17 16 32 H 0.16 4.06 6.88 -2.91 -0.02 4.04 16 Total: -1.00 -78.72 288.46 -0.66 -79.38 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.30 Total: 26.17 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 6.08 Total: -40.44 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -4.58 Total: -129.76 kcal Atomic # 8 Polarization: -121.73 SS G_CDS: -4.19 Total: -125.93 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 147.09 SS G_CDS: -0.29 Total: 146.80 kcal Total: -78.72 -0.66 -79.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192944013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.418 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds