Wall clock time and date at job start Mon Mar 30 2020 00:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 111.00061 * 2 1 4 4 C 1.40003 * 110.99983 * 123.95714 * 2 1 3 5 5 C 1.38863 * 120.51557 * 299.99959 * 4 2 1 6 6 C 1.38834 * 118.44418 * 179.97438 * 5 4 2 7 7 C 1.38002 * 119.38586 * 0.02562 * 6 5 4 8 8 N 1.32054 * 120.99064 * 359.97127 * 7 6 5 9 9 C 1.32253 * 121.69553 * 0.03006 * 8 7 6 10 10 N 1.39290 * 119.74406 * 179.97438 * 9 8 7 11 11 S 1.65598 * 119.99583 * 359.97438 * 10 9 8 12 12 O 1.42105 * 106.40133 * 178.54563 * 11 10 9 13 13 O 1.42100 * 106.40420 * 311.45856 * 11 10 9 14 14 C 1.76193 * 107.22137 * 65.00473 * 11 10 9 15 15 H 1.08002 * 119.99912 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00239 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99976 * 179.97438 * 16 14 11 18 18 Si 1.86805 * 120.00060 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.46872 * 89.99813 * 18 16 14 20 20 H 1.48489 * 109.47164 * 210.00123 * 18 16 14 21 21 H 1.48502 * 109.46764 * 330.00310 * 18 16 14 22 22 H 1.08994 * 109.46734 * 296.04657 * 1 2 3 23 23 H 1.09005 * 109.46698 * 56.04414 * 1 2 3 24 24 H 1.09002 * 109.47250 * 176.04317 * 1 2 3 25 25 H 1.08997 * 109.46703 * 183.95486 * 3 2 1 26 26 H 1.08993 * 109.46920 * 303.95297 * 3 2 1 27 27 H 1.08994 * 109.46863 * 63.95378 * 3 2 1 28 28 H 1.08003 * 120.77715 * 359.95623 * 5 4 2 29 29 H 1.08002 * 120.30467 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.50588 * 179.97438 * 7 6 5 31 31 H 0.96996 * 120.00377 * 179.97438 * 10 9 8 32 32 H 0.97007 * 119.99788 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9708 -0.7301 1.0841 5 6 1.6650 -0.3582 2.3866 6 6 2.1852 -1.1130 3.4293 7 6 2.9845 -2.2013 3.1443 8 7 3.2603 -2.5342 1.8965 9 6 2.7868 -1.8442 0.8724 10 7 3.1041 -2.2313 -0.4275 11 16 4.0712 -3.5504 -0.6858 12 8 4.1766 -3.7010 -2.0949 13 8 5.1983 -3.3946 0.1655 14 6 3.1956 -4.9622 -0.0986 15 1 2.2115 -4.8470 0.3310 16 6 3.7668 -6.2139 -0.1876 17 7 3.1134 -7.2676 0.2511 18 14 5.4688 -6.4132 -0.9315 19 1 6.4930 -6.2944 0.1373 20 1 5.5753 -7.7481 -1.5731 21 1 5.6909 -5.3554 -1.9497 22 1 -0.3632 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0828 1.3431 -0.0709 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.0375 0.4984 2.5840 29 1 1.9670 -0.8504 4.4539 30 1 3.3905 -2.7896 3.9538 31 1 2.7586 -1.7282 -1.1814 32 1 3.5154 -8.1482 0.1888 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951204.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:47 Heat of formation + Delta-G solvation = -20.899160 kcal Electronic energy + Delta-G solvation = -19319.214685 eV Core-core repulsion = 16214.528131 eV Total energy + Delta-G solvation = -3104.686554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.36817 -37.07220 -35.56624 -34.69028 -34.36770 -32.92004 -31.26491 -28.93919 -27.65343 -26.30679 -24.93240 -22.85621 -21.49670 -19.05840 -18.02382 -17.53994 -16.70307 -16.48057 -15.61770 -15.20333 -15.01601 -14.60974 -14.06025 -13.93917 -13.58322 -13.29957 -13.15182 -12.76609 -12.46807 -12.42072 -11.90774 -11.76313 -11.66348 -11.28666 -10.99275 -10.71121 -10.52004 -10.40305 -9.88970 -9.46141 -9.20039 -9.09713 -8.89161 -8.51452 -7.86220 -6.69702 -5.19535 1.36683 1.58989 1.99305 3.13280 3.25411 3.32931 3.79004 3.95028 4.04121 4.09435 4.68640 4.83727 5.00595 5.04104 5.20689 5.21201 5.24125 5.41322 5.44484 5.51340 5.62106 5.77475 5.82709 6.07733 6.16846 6.31496 6.50030 6.76668 6.80635 7.18501 7.57373 7.59484 8.32726 8.42297 8.80965 10.43009 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.007249 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.832532 B = 3861.816157 C = 4250.818186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.502 5.502 3 C 0.028 3.972 4 C -0.017 4.017 5 C -0.075 4.075 6 C -0.215 4.215 7 C 0.151 3.849 8 N -0.489 5.489 9 C 0.427 3.573 10 N -1.024 6.024 11 S 2.664 3.336 12 O -1.004 7.004 13 O -0.983 6.983 14 C -0.988 4.988 15 H 0.119 0.881 16 C 0.155 3.845 17 N -0.826 5.826 18 Si 0.801 3.199 19 H -0.246 1.246 20 H -0.256 1.256 21 H -0.222 1.222 22 H 0.029 0.971 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.429 0.571 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 14.726 3.876 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.223 5.223 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.237 4.237 7 C -0.008 4.008 8 N -0.204 5.204 9 C 0.191 3.809 10 N -0.766 5.766 11 S 2.767 3.233 12 O -0.994 6.994 13 O -0.972 6.972 14 C -1.124 5.124 15 H 0.137 0.863 16 C -0.064 4.064 17 N -0.455 5.455 18 Si 0.622 3.378 19 H -0.169 1.169 20 H -0.180 1.180 21 H -0.145 1.145 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.179 0.821 31 H 0.265 0.735 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.436 13.520 2.891 14.246 hybrid contribution -0.944 0.731 0.629 1.349 sum -4.379 14.251 3.519 15.319 Atomic orbital electron populations 1.22481 0.85893 1.03025 1.00543 1.59425 1.08476 1.13851 1.40550 1.22474 1.01240 0.87608 1.00602 1.19117 1.04340 0.98522 0.89889 1.21710 0.97578 0.98673 0.92382 1.21813 1.03295 0.98921 0.99709 1.22540 0.92441 0.93331 0.92448 1.67442 1.23757 1.29851 0.99321 1.17928 0.89089 0.88319 0.85576 1.53765 1.66019 1.47389 1.09421 1.01901 0.73762 0.74238 0.73443 1.93504 1.86722 1.86020 1.33174 1.93432 1.50125 1.85788 1.67883 1.30100 1.18134 1.08066 1.56085 0.86263 1.24368 0.96972 0.94642 0.90416 1.69992 1.37430 0.99468 1.38636 0.87879 0.84787 0.82599 0.82572 1.16944 1.18046 1.14470 0.95234 0.90894 0.90831 0.91098 0.90884 0.95234 0.85477 0.85045 0.82138 0.73483 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.35 60.07 0.56 0.86 16 2 N -0.50 -6.66 4.16 -186.51 -0.78 -7.43 16 3 C 0.03 0.29 9.39 60.07 0.56 0.86 16 4 C -0.02 -0.27 4.77 -83.34 -0.40 -0.67 16 5 C -0.08 -0.98 8.71 -39.13 -0.34 -1.32 16 6 C -0.21 -2.79 10.10 -39.45 -0.40 -3.18 16 7 C 0.15 2.47 11.17 -17.54 -0.20 2.27 16 8 N -0.49 -10.40 8.34 -12.24 -0.10 -10.50 16 9 C 0.43 8.54 7.36 -154.64 -1.14 7.40 16 10 N -1.02 -21.71 5.84 31.28 0.18 -21.52 16 11 S 2.66 69.95 3.87 -107.50 -0.42 69.53 16 12 O -1.00 -27.64 16.02 -57.17 -0.92 -28.55 16 13 O -0.98 -27.46 15.72 -57.17 -0.90 -28.36 16 14 C -0.99 -28.63 9.88 30.60 0.30 -28.32 16 15 H 0.12 3.55 8.06 -52.49 -0.42 3.13 16 16 C 0.15 4.57 5.47 -17.82 -0.10 4.47 16 17 N -0.83 -24.39 13.96 55.43 0.77 -23.61 16 18 Si 0.80 21.15 26.54 -169.99 -4.51 16.64 16 19 H -0.25 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.22 -5.96 5.60 56.52 0.32 -5.65 16 22 H 0.03 0.28 7.19 -51.93 -0.37 -0.10 16 23 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.03 0.27 7.41 -51.93 -0.38 -0.11 16 28 H 0.13 1.28 7.17 -52.48 -0.38 0.90 16 29 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.16 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.43 7.87 8.09 -34.47 -0.28 7.60 16 32 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 285.32 15.07 4.30 4.30 Total: -1.00 -35.04 285.32 -7.09 -42.14 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.59 Total: 5.03 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.14 Total: -17.64 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.08 Total: -63.07 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -1.81 Total: -56.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.51 Total: 16.64 kcal Atomic # 16 Polarization: 69.95 SS G_CDS: -0.42 Total: 69.53 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -35.04 -7.09 -42.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951204.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.236 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds