Wall clock time and date at job start Mon Mar 30 2020 00:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 111.00061 * 2 1 4 4 C 1.40003 * 110.99983 * 123.95714 * 2 1 3 5 5 C 1.38863 * 120.51557 * 299.99959 * 4 2 1 6 6 C 1.38834 * 118.44418 * 179.97438 * 5 4 2 7 7 C 1.38002 * 119.38586 * 0.02562 * 6 5 4 8 8 N 1.32054 * 120.99064 * 359.97127 * 7 6 5 9 9 C 1.32253 * 121.69553 * 0.03006 * 8 7 6 10 10 N 1.39290 * 119.74406 * 179.97438 * 9 8 7 11 11 S 1.65598 * 119.99583 * 359.97438 * 10 9 8 12 12 O 1.42105 * 106.40133 * 178.54563 * 11 10 9 13 13 O 1.42100 * 106.40420 * 311.45856 * 11 10 9 14 14 C 1.76193 * 107.22137 * 65.00473 * 11 10 9 15 15 H 1.08002 * 119.99912 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00239 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99976 * 179.97438 * 16 14 11 18 18 Si 1.86805 * 120.00060 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.46872 * 89.99813 * 18 16 14 20 20 H 1.48489 * 109.47164 * 210.00123 * 18 16 14 21 21 H 1.48502 * 109.46764 * 330.00310 * 18 16 14 22 22 H 1.08994 * 109.46734 * 296.04657 * 1 2 3 23 23 H 1.09005 * 109.46698 * 56.04414 * 1 2 3 24 24 H 1.09002 * 109.47250 * 176.04317 * 1 2 3 25 25 H 1.08997 * 109.46703 * 183.95486 * 3 2 1 26 26 H 1.08993 * 109.46920 * 303.95297 * 3 2 1 27 27 H 1.08994 * 109.46863 * 63.95378 * 3 2 1 28 28 H 1.08003 * 120.77715 * 359.95623 * 5 4 2 29 29 H 1.08002 * 120.30467 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.50588 * 179.97438 * 7 6 5 31 31 H 0.96996 * 120.00377 * 179.97438 * 10 9 8 32 32 H 0.97007 * 119.99788 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9708 -0.7301 1.0841 5 6 1.6650 -0.3582 2.3866 6 6 2.1852 -1.1130 3.4293 7 6 2.9845 -2.2013 3.1443 8 7 3.2603 -2.5342 1.8965 9 6 2.7868 -1.8442 0.8724 10 7 3.1041 -2.2313 -0.4275 11 16 4.0712 -3.5504 -0.6858 12 8 4.1766 -3.7010 -2.0949 13 8 5.1983 -3.3946 0.1655 14 6 3.1956 -4.9622 -0.0986 15 1 2.2115 -4.8470 0.3310 16 6 3.7668 -6.2139 -0.1876 17 7 3.1134 -7.2676 0.2511 18 14 5.4688 -6.4132 -0.9315 19 1 6.4930 -6.2944 0.1373 20 1 5.5753 -7.7481 -1.5731 21 1 5.6909 -5.3554 -1.9497 22 1 -0.3632 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0828 1.3431 -0.0709 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.0375 0.4984 2.5840 29 1 1.9670 -0.8504 4.4539 30 1 3.3905 -2.7896 3.9538 31 1 2.7586 -1.7282 -1.1814 32 1 3.5154 -8.1482 0.1888 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951204.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:46 Heat of formation + Delta-G solvation = -49.330090 kcal Electronic energy + Delta-G solvation = -19320.447543 eV Core-core repulsion = 16214.528131 eV Total energy + Delta-G solvation = -3105.919411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58190 -38.15985 -37.64945 -36.52229 -36.17006 -35.14801 -32.47012 -30.19331 -28.54146 -28.45645 -25.97600 -24.16739 -22.60735 -21.00470 -19.74466 -19.18852 -18.70369 -17.51401 -17.33222 -16.72013 -16.31435 -16.07616 -15.69000 -15.42064 -15.04791 -14.93207 -14.72453 -14.35549 -13.68321 -13.40078 -13.37646 -13.20520 -12.96036 -12.80923 -12.67277 -12.60422 -12.57251 -12.36875 -11.90529 -11.31419 -11.09417 -10.65227 -10.45233 -9.47616 -9.19740 -8.92953 -7.45330 0.00315 0.18787 0.40689 1.04421 1.15437 1.20883 1.90396 2.26101 2.45785 2.81706 2.83201 3.29325 3.45427 3.87968 4.03579 4.14544 4.27335 4.34443 4.43935 4.58653 4.65573 4.66744 4.89113 5.01548 5.02699 5.17609 5.23769 5.41173 5.60849 5.86216 5.96966 6.03781 6.33835 6.55892 7.12868 8.25395 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.007249 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.832532 B = 3861.816157 C = 4250.818186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.523 5.523 3 C 0.028 3.972 4 C -0.003 4.003 5 C -0.071 4.071 6 C -0.184 4.184 7 C 0.119 3.881 8 N -0.545 5.545 9 C 0.377 3.623 10 N -1.020 6.020 11 S 2.693 3.307 12 O -1.023 7.023 13 O -1.005 7.005 14 C -1.007 5.007 15 H 0.096 0.904 16 C 0.110 3.890 17 N -0.855 5.855 18 Si 0.827 3.173 19 H -0.240 1.240 20 H -0.217 1.217 21 H -0.232 1.232 22 H 0.050 0.950 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.170 0.830 29 H 0.178 0.822 30 H 0.175 0.825 31 H 0.438 0.562 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 16.988 4.803 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.246 5.246 3 C -0.118 4.118 4 C -0.105 4.105 5 C -0.098 4.098 6 C -0.205 4.205 7 C -0.038 4.038 8 N -0.261 5.261 9 C 0.143 3.857 10 N -0.768 5.768 11 S 2.793 3.207 12 O -1.013 7.013 13 O -0.994 6.994 14 C -1.141 5.141 15 H 0.114 0.886 16 C -0.106 4.106 17 N -0.486 5.486 18 Si 0.644 3.356 19 H -0.164 1.164 20 H -0.139 1.139 21 H -0.154 1.154 22 H 0.068 0.932 23 H 0.113 0.887 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.188 0.812 29 H 0.195 0.805 30 H 0.192 0.808 31 H 0.277 0.723 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.298 15.766 3.839 16.786 hybrid contribution -0.824 0.180 0.468 0.965 sum -5.122 15.946 4.307 17.294 Atomic orbital electron populations 1.22532 0.84273 1.02447 1.02626 1.59380 1.09932 1.15267 1.39983 1.22537 1.00442 0.86257 1.02612 1.19228 1.02422 0.96962 0.91868 1.22184 0.97225 0.99499 0.90939 1.22267 0.99934 0.96315 1.02015 1.22993 0.94122 0.95365 0.91318 1.67226 1.25664 1.31922 1.01270 1.18246 0.92146 0.90807 0.84481 1.53095 1.66419 1.46237 1.11049 1.00813 0.73406 0.74044 0.72401 1.93463 1.87215 1.86819 1.33836 1.93389 1.51342 1.86330 1.68348 1.30519 1.17638 1.09954 1.55983 0.88599 1.25109 0.99865 0.94703 0.90924 1.70014 1.38881 1.00221 1.39468 0.87481 0.81518 0.84372 0.82252 1.16351 1.13865 1.15428 0.93155 0.88736 0.92824 0.92540 0.88757 0.93252 0.81225 0.80457 0.80774 0.72300 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.35 127.69 1.19 1.71 16 2 N -0.52 -12.72 4.16 -743.98 -3.10 -15.81 16 3 C 0.03 0.50 9.39 127.69 1.20 1.69 16 4 C 0.00 -0.10 4.77 38.34 0.18 0.08 16 5 C -0.07 -1.57 8.71 22.56 0.20 -1.37 16 6 C -0.18 -4.12 10.10 22.36 0.23 -3.89 16 7 C 0.12 3.81 11.17 84.60 0.94 4.75 16 8 N -0.54 -23.65 8.34 -192.63 -1.61 -25.25 16 9 C 0.38 15.22 7.36 133.15 0.98 16.20 16 10 N -1.02 -44.38 5.84 -54.96 -0.32 -44.70 16 11 S 2.69 145.24 3.87 -56.49 -0.22 145.02 16 12 O -1.02 -57.40 16.02 -128.00 -2.05 -59.45 16 13 O -1.00 -57.58 15.72 -128.00 -2.01 -59.59 16 14 C -1.01 -60.52 9.88 67.73 0.67 -59.85 16 15 H 0.10 6.03 8.06 -2.91 -0.02 6.01 16 16 C 0.11 6.63 5.47 84.65 0.46 7.09 16 17 N -0.86 -51.45 13.96 21.45 0.30 -51.15 16 18 Si 0.83 43.03 26.54 68.60 1.82 44.85 16 19 H -0.24 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.22 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.23 -12.38 5.60 99.48 0.56 -11.82 16 22 H 0.05 0.73 7.19 -2.39 -0.02 0.71 16 23 H 0.09 1.35 8.12 -2.38 -0.02 1.33 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 27 H 0.05 0.69 7.41 -2.39 -0.02 0.67 16 28 H 0.17 2.36 7.17 -2.91 -0.02 2.34 16 29 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.18 4.72 8.06 -2.91 -0.02 4.70 16 31 H 0.44 16.48 8.09 -96.75 -0.78 15.70 16 32 H 0.29 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -78.88 285.32 -0.91 -79.79 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.21 Total: 19.87 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 6.06 Total: -33.58 kcal Atomic # 7 Polarization: -132.19 SS G_CDS: -4.73 Total: -136.92 kcal Atomic # 8 Polarization: -114.98 SS G_CDS: -4.06 Total: -119.04 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.82 Total: 44.85 kcal Atomic # 16 Polarization: 145.24 SS G_CDS: -0.22 Total: 145.02 kcal Total: -78.88 -0.91 -79.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951204.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.462 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds