Wall clock time and date at job start Mon Mar 30 2020 00:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35300 * 126.46994 * 2 1 4 4 N 1.30760 * 108.76752 * 180.08731 * 3 2 1 5 5 C 1.33476 * 109.09948 * 0.02783 * 4 3 2 6 6 C 1.35032 * 108.12827 * 359.85960 * 5 4 3 7 7 C 1.50616 * 124.84505 * 180.20790 * 6 5 4 8 8 C 1.53418 * 108.80252 * 342.21099 * 7 6 5 9 9 N 1.47059 * 109.09477 * 45.08247 * 8 7 6 10 10 S 1.65595 * 120.80239 * 115.71938 * 9 8 7 11 11 O 1.42097 * 106.40391 * 336.45866 * 10 9 8 12 12 O 1.42097 * 106.40323 * 203.54107 * 10 9 8 13 13 C 1.76204 * 107.22033 * 90.00006 * 10 9 8 14 14 H 1.08002 * 119.99492 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00023 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00481 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99886 * 179.72864 * 15 13 10 18 18 H 1.48494 * 109.47225 * 180.27306 * 17 15 13 19 19 H 1.48506 * 109.46866 * 300.27330 * 17 15 13 20 20 H 1.48498 * 109.47306 * 60.26614 * 17 15 13 21 21 C 1.47400 * 118.39103 * 295.98963 * 9 8 7 22 22 H 1.09005 * 109.47026 * 270.00213 * 1 2 3 23 23 H 1.08994 * 109.47120 * 30.00306 * 1 2 3 24 24 H 1.09003 * 109.46657 * 150.00405 * 1 2 3 25 25 H 1.07997 * 125.61579 * 0.04753 * 3 2 1 26 26 H 1.08998 * 109.58530 * 222.41307 * 7 6 5 27 27 H 1.09002 * 109.69279 * 102.07230 * 7 6 5 28 28 H 1.09000 * 109.53430 * 285.19924 * 8 7 6 29 29 H 1.09002 * 109.53377 * 164.96671 * 8 7 6 30 30 H 0.97005 * 119.99656 * 359.72741 * 16 15 13 31 31 H 1.08997 * 109.89264 * 163.47923 * 21 9 8 32 32 H 1.08996 * 109.89697 * 284.60267 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2693 1.0880 0.0000 4 7 3.5150 0.6904 -0.0019 5 6 3.5475 -0.6439 -0.0037 6 6 2.2749 -1.0952 0.0002 7 6 1.8769 -2.5479 0.0041 8 6 3.0790 -3.3911 -0.4406 9 7 4.2837 -2.9168 0.2569 10 16 5.0883 -3.8972 1.3216 11 8 4.1441 -4.8573 1.7753 12 8 5.8037 -3.0367 2.1973 13 6 6.2983 -4.7865 0.3996 14 1 6.3925 -4.6252 -0.6641 15 6 7.1246 -5.6881 1.0362 16 7 7.0102 -5.8841 2.3316 17 14 8.4022 -6.6364 0.0574 18 1 9.1524 -7.5393 0.9668 19 1 7.7253 -7.4409 -0.9914 20 1 9.3444 -5.6828 -0.5815 21 6 4.7540 -1.5457 -0.0101 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.9371 2.1156 0.0007 26 1 1.0476 -2.7014 -0.6862 27 1 1.5752 -2.8433 1.0090 28 1 3.2173 -3.2894 -1.5170 29 1 2.9021 -4.4375 -0.1919 30 1 6.3470 -5.3913 2.8399 31 1 5.4524 -1.2352 0.7671 32 1 5.2396 -1.5033 -0.9850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192964028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:03 Heat of formation + Delta-G solvation = -52.918193 kcal Electronic energy + Delta-G solvation = -19279.473286 eV Core-core repulsion = 16173.398283 eV Total energy + Delta-G solvation = -3106.075003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.25506 -38.17514 -37.78805 -36.58620 -35.34008 -35.25262 -32.35505 -30.60059 -28.10431 -27.69851 -25.58842 -24.36513 -21.89254 -21.40858 -20.68080 -19.05959 -18.39576 -17.72094 -17.15686 -16.83611 -16.74788 -15.77772 -15.59252 -15.43096 -15.18771 -14.70757 -14.59781 -14.20011 -13.82293 -13.46310 -13.32942 -13.08512 -13.07961 -12.99511 -12.89231 -12.74015 -12.46474 -12.09501 -11.95159 -11.18434 -11.01650 -10.78872 -10.49330 -9.97268 -9.39792 -9.17579 -7.64366 0.03480 0.99299 1.47531 1.52024 1.78361 1.86203 2.04434 2.31573 2.47384 2.59415 3.42804 3.47508 3.67511 3.82639 3.96564 4.05525 4.08819 4.30078 4.35310 4.43946 4.45962 4.57912 4.60844 4.68200 4.73564 4.96325 5.16617 5.31622 5.41937 5.65429 5.69575 5.79616 6.32777 6.48104 7.07543 7.93676 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039950 B = 0.005626 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.702912 B = 4975.257681 C = 5119.036233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.452 5.452 3 C 0.182 3.818 4 N -0.525 5.525 5 C -0.043 4.043 6 C -0.020 4.020 7 C -0.052 4.052 8 C 0.120 3.880 9 N -1.001 6.001 10 S 2.698 3.302 11 O -1.034 7.034 12 O -1.045 7.045 13 C -1.098 5.098 14 H 0.123 0.877 15 C 0.034 3.966 16 N -0.876 5.876 17 Si 1.122 2.878 18 H -0.268 1.268 19 H -0.247 1.247 20 H -0.252 1.252 21 C 0.208 3.792 22 H 0.085 0.915 23 H 0.119 0.881 24 H 0.098 0.902 25 H 0.250 0.750 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.255 0.745 31 H 0.075 0.925 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 9.725 -10.310 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.134 5.134 3 C -0.100 4.100 4 N -0.244 5.244 5 C -0.173 4.173 6 C -0.137 4.137 7 C -0.092 4.092 8 C -0.005 4.005 9 N -0.839 5.839 10 S 2.802 3.198 11 O -1.024 7.024 12 O -1.035 7.035 13 C -1.232 5.232 14 H 0.141 0.859 15 C -0.176 4.176 16 N -0.506 5.506 17 Si 0.935 3.065 18 H -0.193 1.193 19 H -0.170 1.170 20 H -0.176 1.176 21 C 0.082 3.918 22 H 0.103 0.897 23 H 0.138 0.862 24 H 0.117 0.883 25 H 0.266 0.734 26 H 0.143 0.857 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.225 9.124 -9.206 18.518 hybrid contribution -1.475 0.739 -0.025 1.650 sum -14.700 9.864 -9.231 19.965 Atomic orbital electron populations 1.22441 0.73336 1.06900 1.04941 1.45305 1.09270 1.05338 1.53472 1.25815 0.84254 0.95014 1.04911 1.69826 1.22246 1.10993 1.21349 1.20544 0.94574 0.91099 1.11133 1.20928 0.90759 0.91347 1.10702 1.20493 0.99137 0.86185 1.03397 1.21574 0.82381 0.98471 0.98100 1.57552 1.40012 1.23647 1.62699 1.00517 0.73719 0.72283 0.73265 1.93349 1.65253 1.62370 1.81417 1.93351 1.74733 1.68992 1.66468 1.31892 1.38722 1.41100 1.11469 0.85882 1.27877 0.99772 0.94334 0.95588 1.71011 1.32589 1.38851 1.08185 0.83047 0.73037 0.75808 0.74584 1.19267 1.17038 1.17599 1.19357 0.92484 0.77901 1.02077 0.89664 0.86221 0.88298 0.73394 0.85666 0.90951 0.88457 0.88797 0.93439 0.90651 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 11.05 127.77 1.41 2.01 16 2 N -0.45 -9.72 3.14 -537.78 -1.69 -11.41 16 3 C 0.18 4.25 12.58 180.10 2.26 6.51 16 4 N -0.53 -17.91 11.25 -188.20 -2.12 -20.02 16 5 C -0.04 -1.57 7.06 41.55 0.29 -1.28 16 6 C -0.02 -0.60 6.77 41.11 0.28 -0.32 16 7 C -0.05 -1.38 6.14 29.96 0.18 -1.19 16 8 C 0.12 3.90 6.35 86.41 0.55 4.45 16 9 N -1.00 -42.43 3.27 -515.71 -1.69 -44.12 16 10 S 2.70 148.00 4.37 -56.49 -0.25 147.76 16 11 O -1.03 -60.26 16.35 -128.00 -2.09 -62.35 16 12 O -1.05 -64.36 16.25 -128.00 -2.08 -66.44 16 13 C -1.10 -61.58 9.75 67.73 0.66 -60.92 16 14 H 0.12 6.22 7.81 -2.91 -0.02 6.19 16 15 C 0.03 1.98 5.46 84.65 0.46 2.44 16 16 N -0.88 -55.49 13.66 21.45 0.29 -55.20 16 17 Si 1.12 47.13 29.90 68.60 2.05 49.18 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 21 C 0.21 8.42 6.86 85.44 0.59 9.00 16 22 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.10 0.69 7.67 -2.39 -0.02 0.67 16 25 H 0.25 3.08 8.06 -2.91 -0.02 3.05 16 26 H 0.13 2.10 7.80 -2.39 -0.02 2.08 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.09 3.18 7.09 -2.39 -0.02 3.16 16 30 H 0.25 16.91 6.52 -92.70 -0.60 16.31 16 31 H 0.08 3.44 6.95 -2.39 -0.02 3.42 16 32 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -86.23 284.12 0.42 -85.81 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.30 Total: 16.09 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 6.69 Total: -39.29 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -5.20 Total: -130.75 kcal Atomic # 8 Polarization: -124.63 SS G_CDS: -4.17 Total: -128.80 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.05 Total: 49.18 kcal Atomic # 16 Polarization: 148.00 SS G_CDS: -0.25 Total: 147.76 kcal Total: -86.23 0.42 -85.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192964028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.888 kcal (2) G-P(sol) polarization free energy of solvation -86.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds